Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0049401 Helianthus annuus HOM05D003385 ORTHO05D003844 2.6e-46 188.3 94 100.0
THA.LOC109116620 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 5.1e-10 67.8 47 63.8
Aa31sc16G240 Aethionema arabicum HOM05D003385 ORTHO05D003844 3.3e-09 65.1 47 59.6
THA.LOC104825062 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 5.7e-09 64.3 47 59.6
Psat7g263040 Pisum sativum HOM05D003385 ORTHO05D003844 9.7e-09 63.5 61 49.2
BcaC06g32828 Brassica carinata HOM05D003385 ORTHO05D003844 1.3e-08 63.2 47 55.3
COL.COLO4_14125 Corchorus olitorius HOM05D003385 ORTHO05D003844 1.3e-08 63.2 47 59.6
ClCG01G017280 Citrullus lanatus HOM05D003385 ORTHO05D003844 1.7e-08 62.8 47 57.4
Oeu015324.1 Olea europaea HOM05D003385 ORTHO05D003844 1.7e-08 62.8 47 53.2
Carub.0007s1580 Capsella rubella HOM05D003385 ORTHO05D003844 2.2e-08 62.4 47 57.4
Cfa008171 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.2e-08 62.4 47 61.7
Glyma.11G031900 Glycine max HOM05D003385 ORTHO05D003844 2.2e-08 62.4 52 55.8
CiPaw.03G093500 Carya illinoinensis HOM05D003385 ORTHO05D003844 2.8e-08 62.0 47 61.7
Potri.014G059600 Populus trichocarpa HOM05D003385 ORTHO05D003844 2.8e-08 62.0 57 54.4
Atru.chr1.724 Acer truncatum HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 57.4
CSS0013240 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.7e-08 61.6 45 60.0
CSS0043100 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 3.7e-08 61.6 45 60.0
CARHR232630 Cardamine hirsuta HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 55.3
Glyma.07G022200 Glycine max HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 55.3
Glyma.08G219600 Glycine max HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 63.8
Hma1.2p1_0301F.1_g118330 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 59.6
MD07G1254000 Malus domestica HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 57.4
Nn1g01044 Nelumbo nucifera HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 59.6
RcHm_v2.0_Chr1g0374431 Rosa chinensis HOM05D003385 ORTHO05D003844 3.7e-08 61.6 47 57.4
AL7G27920 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 4.8e-08 61.2 47 55.3
Duzib205G0969 Durio zibethinus HOM05D003385 ORTHO05D003844 4.8e-08 61.2 47 59.6
Phvul.010G162200 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 4.8e-08 61.2 47 61.7
Sc01g0008530 Simmondsia chinensis HOM05D003385 ORTHO05D003844 4.8e-08 61.2 47 55.3
Thecc.03G156100 Theobroma cacao HOM05D003385 ORTHO05D003844 4.8e-08 61.2 47 57.4
GSVIVG01018638001 Vitis vinifera HOM05D003385 ORTHO05D003844 4.8e-08 61.2 47 57.4
CSS0016808 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 6.3e-08 60.8 47 59.6
MELO3C007606.2 Cucumis melo HOM05D003385 ORTHO05D003844 6.3e-08 60.8 47 57.4
Lj3g0012147 Lotus japonicus HOM05D003385 ORTHO05D003844 6.3e-08 60.8 62 50.0
Manes.02G038600 Manihot esculenta HOM05D003385 ORTHO05D003844 6.3e-08 60.8 47 57.4
A01p16500 Brassica napus HOM05D003385 ORTHO05D003844 8.2e-08 60.5 47 55.3
CANSAT56G4393 Cannabis sativa HOM05D003385 ORTHO05D003844 8.2e-08 60.5 47 55.3
Cfa011180 Carpinus fangiana HOM05D003385 ORTHO05D003844 8.2e-08 60.5 47 57.4
COL.COLO4_12504 Corchorus olitorius HOM05D003385 ORTHO05D003844 1.1e-07 60.1 47 59.6
Glyma.08G219700 Glycine max HOM05D003385 ORTHO05D003844 1.1e-07 60.1 47 53.2
Gohir.A12G198600 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.1e-07 60.1 47 57.4
Gohir.D12G201300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.1e-07 60.1 47 57.4
Gorai.008G216400 Gossypium raimondii HOM05D003385 ORTHO05D003844 1.1e-07 60.1 47 57.4
Lsat_1_v5_gn_6_3121 Lactuca sativa HOM05D003385 ORTHO05D003844 1.1e-07 60.1 61 50.8
Potri.001G124100 Populus trichocarpa HOM05D003385 ORTHO05D003844 1.1e-07 60.1 56 51.8
QL12p012571 Quercus lobata HOM05D003385 ORTHO05D003844 1.1e-07 60.1 47 59.6
Sabra14G0043600 Salix brachista HOM05D003385 ORTHO05D003844 1.1e-07 60.1 47 61.7
BcaC06g32830 Brassica carinata HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 53.2
C07p54110 Brassica napus HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 53.2
DCAR_020191 Daucus carota HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 57.4
Gohir.A03G058800 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 55.3
Gohir.D03G107300 Gossypium hirsutum HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 55.3
Gorai.003G113600 Gossypium raimondii HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 55.3
Lsat_1_v5_gn_9_52121 Lactuca sativa HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 53.2
Phvul.010G162266 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.4e-07 59.7 57 49.1
Sed0011687 Sechium edule HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 55.3
SEGI_20473 Sequoiadendron giganteum HOM05D003385 ORTHO05D003844 1.4e-07 59.7 47 53.2
A03p55830 Brassica napus HOM05D003385 ORTHO05D003844 1.8e-07 59.3 47 53.2
BraA03t14651Z Brassica rapa HOM05D003385 ORTHO05D003844 1.8e-07 59.3 47 53.2
CSS0009843 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 1.8e-07 59.3 47 59.6
CiPaw.12G108800 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.8e-07 59.3 47 57.4
Cc08_g12660 Coffea canephora HOM05D003385 ORTHO05D003844 1.8e-07 59.3 47 57.4
MD06G1061000 Malus domestica HOM05D003385 ORTHO05D003844 1.8e-07 59.3 47 55.3
Manes.06G135000 Manihot esculenta HOM05D003385 ORTHO05D003844 1.8e-07 59.3 47 55.3
AagrBONN_evm.TU.Sc2ySwM_368.2415 Anthoceros agrestis HOM05D003385 ORTHO05D003844 2.4e-07 58.9 47 57.4
CSS0001286 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 2.4e-07 58.9 47 55.3
Ca_06643_v3 Cicer arietinum L. HOM05D003385 ORTHO05D003844 2.4e-07 58.9 47 55.3
Manes.01G079400 Manihot esculenta HOM05D003385 ORTHO05D003844 2.4e-07 58.9 47 55.3
TAR374G1520 Trochodendron aralioides HOM05D003385 ORTHO05D003844 2.4e-07 58.9 47 51.1
TAR375G0116 Trochodendron aralioides HOM05D003385 ORTHO05D003844 2.4e-07 58.9 45 57.8
BcaC09g50795 Brassica carinata HOM05D003385 ORTHO05D003844 3.1e-07 58.5 47 53.2
BcaNung06354 Brassica carinata HOM05D003385 ORTHO05D003844 3.1e-07 58.5 47 53.2
C01p20710 Brassica napus HOM05D003385 ORTHO05D003844 3.1e-07 58.5 47 53.2
BolC1t01997H Brassica oleracea HOM05D003385 ORTHO05D003844 3.1e-07 58.5 47 53.2
Cfa007764 Carpinus fangiana HOM05D003385 ORTHO05D003844 3.1e-07 58.5 47 55.3
THA.LOC109116621 Tarenaya hassleriana HOM05D003385 ORTHO05D003844 3.1e-07 58.5 56 50.0
TWI23G0527 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 3.1e-07 58.5 57 47.4
AT4G25225 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 4.1e-07 58.2 47 53.2
BraA01t01604Z Brassica rapa HOM05D003385 ORTHO05D003844 4.1e-07 58.2 47 53.2
Duzib068G0982 Durio zibethinus HOM05D003385 ORTHO05D003844 4.1e-07 58.2 47 53.2
Migut.A00964 Erythranthe guttata HOM05D003385 ORTHO05D003844 4.1e-07 58.2 47 55.3
Prupe.2G277300 Prunus persica HOM05D003385 ORTHO05D003844 4.1e-07 58.2 47 53.2
Sed0003372 Sechium edule HOM05D003385 ORTHO05D003844 4.1e-07 58.2 47 53.2
SMO301G0071 Selaginella moellendorffii HOM05D003385 ORTHO05D003844 4.1e-07 58.2 51 52.9
AL4G31830 Arabidopsis lyrata HOM05D003385 ORTHO05D003844 5.3e-07 57.8 47 53.2
BolC7t45897H Brassica oleracea HOM05D003385 ORTHO05D003844 5.3e-07 57.8 47 51.1
Duzib138G0675 Durio zibethinus HOM05D003385 ORTHO05D003844 5.3e-07 57.8 47 55.3
SalBow2G2468 Salvia bowleyana HOM05D003385 ORTHO05D003844 5.3e-07 57.8 47 53.2
BcaB06g28869 Brassica carinata HOM05D003385 ORTHO05D003844 6.9e-07 57.4 73 41.1
CANSAT21G1636 Cannabis sativa HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 53.2
Cfa011178 Carpinus fangiana HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 53.2
Haze_02669 Corylus avellana HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 53.2
Eucgr.E00434 Eucalyptus grandis HOM05D003385 ORTHO05D003844 6.9e-07 57.4 49 53.1
HanXRQChr06g0164351 Helianthus annuus HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 57.4
Hma1.2p1_0432F.1_g151710 Hydrangea macrophylla HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 55.3
Lalb_Chr04g0263501 Lupinus albus HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 51.1
Medtr4g007230 Medicago truncatula HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 55.3
Nn6g33988 Nelumbo nucifera HOM05D003385 ORTHO05D003844 6.9e-07 57.4 47 55.3
Rhsim09G0191500 Rhododendron simsii HOM05D003385 ORTHO05D003844 6.9e-07 57.4 45 55.6
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 6.9e-07 57.4 47 55.3
Aa31LG2G12640 Aethionema arabicum HOM05D003385 ORTHO05D003844 9.1e-07 57.0 47 53.2
arahy.Tifrunner.gnm1.ann1.4KS3AX Arachis hypogaea HOM05D003385 ORTHO05D003844 9.1e-07 57.0 47 61.7
EL10Ac3g05843 Beta vulgaris HOM05D003385 ORTHO05D003844 9.1e-07 57.0 47 53.2
CSS0007736 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 9.1e-07 57.0 46 52.2
Carub.0006s3706 Capsella rubella HOM05D003385 ORTHO05D003844 9.1e-07 57.0 47 53.2
Migut.F01181 Erythranthe guttata HOM05D003385 ORTHO05D003844 9.1e-07 57.0 47 51.1
Lj2g0011318 Lotus japonicus HOM05D003385 ORTHO05D003844 9.1e-07 57.0 52 50.0
Thecc.01G381400 Theobroma cacao HOM05D003385 ORTHO05D003844 9.1e-07 57.0 47 55.3
CAN.G49.2 Capsicum annuum HOM05D003385 ORTHO05D003844 1.2e-06 56.6 47 53.2
CiPaw.13G033300 Carya illinoinensis HOM05D003385 ORTHO05D003844 1.2e-06 56.6 47 51.1
Glyma.13G370600 Glycine max HOM05D003385 ORTHO05D003844 1.2e-06 56.6 47 55.3
Glyma.18G147400 Glycine max HOM05D003385 ORTHO05D003844 1.2e-06 56.6 47 59.6
Mapoly0083s0036 Marchantia polymorpha HOM05D003385 ORTHO05D003844 1.2e-06 56.6 52 50.0
Solyc06g034320.1 Solanum lycopersicum HOM05D003385 ORTHO05D003844 1.2e-06 56.6 47 53.2
Sopen06g010940 Solanum pennellii HOM05D003385 ORTHO05D003844 1.2e-06 56.6 47 53.2
Phvul.002G062300 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.5e-06 56.2 52 48.1
Phvul.005G182800 Phaseolus vulgaris HOM05D003385 ORTHO05D003844 1.5e-06 56.2 47 55.3
Pp3c13_2320 Physcomitrium patens HOM05D003385 ORTHO05D003844 1.5e-06 56.2 52 53.8
VMungo0331G0997 Vigna mungo HOM05D004080 ORTHO05D003844 1.5e-06 56.2 88 39.8
Zm00001eb265740 Zea mays HOM05D003385 ORTHO05D003844 1.5e-06 56.2 57 45.6
CARHR129980 Cardamine hirsuta HOM05D003385 ORTHO05D003844 2.0e-06 55.8 47 51.1
Gohir.A11G079000 Gossypium hirsutum HOM05D003385 ORTHO05D003844 2.0e-06 55.8 47 53.2
Gorai.007G089200 Gossypium raimondii HOM05D003385 ORTHO05D003844 2.0e-06 55.8 47 53.2
PSO675G2010 Papaver somniferum HOM05D003385 ORTHO05D003844 2.0e-06 55.8 47 53.2
Atru.chr9.1329 Acer truncatum HOM05D003385 ORTHO05D003844 2.6e-06 55.5 47 48.9
CARHR248220 Cardamine hirsuta HOM05D003385 ORTHO05D003844 2.6e-06 55.5 47 53.2
Cfa011181 Carpinus fangiana HOM05D003385 ORTHO05D003844 2.6e-06 55.5 49 53.1
PSO063G5519 Papaver somniferum HOM05D003385 ORTHO05D003844 2.6e-06 55.5 58 44.8
PSO782G4697 Papaver somniferum HOM05D003385 ORTHO05D003844 2.6e-06 55.5 58 44.8
Potri.001G123000 Populus trichocarpa HOM05D003385 ORTHO05D003844 2.6e-06 55.5 47 51.1
CiPaw.11G152800 Carya illinoinensis HOM05D003385 ORTHO05D003844 3.4e-06 55.1 47 51.1
CAN.G1218.14 Capsicum annuum HOM05D003385 ORTHO05D003844 4.5e-06 54.7 47 53.2
DCAR_008484 Daucus carota HOM05D003385 ORTHO05D003844 4.5e-06 54.7 47 53.2
Gohir.D11G083700 Gossypium hirsutum HOM05D003385 ORTHO05D003844 4.5e-06 54.7 47 51.1
RcHm_v2.0_Chr7g0202941 Rosa chinensis HOM05D003385 ORTHO05D003844 4.5e-06 54.7 47 51.1
CSS0015376 Camellia sinensis var. sinensis HOM05D003385 ORTHO05D003844 5.9e-06 54.3 46 47.8
FAN11G3453 Fragaria x ananassa HOM05D003385 ORTHO05D003844 5.9e-06 54.3 47 53.2
FAN21G1696 Fragaria x ananassa HOM05D003385 ORTHO05D003844 5.9e-06 54.3 47 53.2
Medtr2g105230 Medicago truncatula HOM05D003385 ORTHO05D003844 5.9e-06 54.3 52 51.9
Nitab4.5_0012281g0010 Nicotiana tabacum HOM05D003385 ORTHO05D003844 5.9e-06 54.3 47 51.1
PGR042G2744 Punica granatum HOM05D003385 ORTHO05D003844 5.9e-06 54.3 47 51.1
Rhsim06G0032500 Rhododendron simsii HOM05D003046 ORTHO05D003428 5.9e-06 54.3 42 54.8
TWI39G0135 Tripterygium wilfordii HOM05D003385 ORTHO05D003844 5.9e-06 54.3 47 51.1
AT2G35736 Arabidopsis thaliana HOM05D003385 ORTHO05D003844 7.7e-06 53.9 47 46.8
Carub.0004s1747 Capsella rubella HOM05D003385 ORTHO05D003844 7.7e-06 53.9 47 46.8
AUR62002201 Chenopodium quinoa HOM05D003385 ORTHO05D003844 7.7e-06 53.9 47 48.9
Glyma.15G003000 Glycine max HOM05D003385 ORTHO05D003844 7.7e-06 53.9 47 55.3


User provided reference genes

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