Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 3.7e-191 671.4 344 100.0
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 1.3e-127 460.3 345 71.3
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 6.0e-125 451.4 324 74.1
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.1e-110 404.1 435 54.0
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.1e-107 394.0 350 62.3
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.8e-106 389.4 346 63.0
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.1e-105 387.5 344 62.8
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 4.1e-105 385.6 353 61.2
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 4.1e-105 385.6 314 65.3
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.5e-104 383.6 348 60.6
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 1.4e-102 377.1 365 58.6
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.5e-102 376.3 348 59.5
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 7.2e-102 374.8 392 55.9
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 7.2e-102 374.8 351 60.1
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 9.4e-102 374.4 349 60.2
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 4.7e-101 372.1 368 58.2
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 4.7e-101 372.1 320 64.1
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 7.9e-101 371.3 350 59.4
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.4e-100 370.5 345 60.9
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 3.0e-100 369.4 352 60.2
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 3.9e-100 369.0 356 58.4
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 8.8e-100 367.9 336 61.6
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 2.0e-99 366.7 355 57.7
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 4.8e-98 362.1 360 56.7
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 1.8e-97 360.1 316 62.0
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.3e-97 358.6 335 57.6
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 9.1e-97 357.8 370 55.9
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.2e-96 357.5 365 55.6
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 5.9e-96 355.1 341 56.9
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 4.2e-94 349.0 338 58.0
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 1.2e-93 347.4 379 53.8
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.0e-92 344.4 432 49.8
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.8e-92 343.6 366 55.5
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 4.0e-92 342.4 357 56.0
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 8.8e-92 341.3 387 51.4
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.1e-91 340.9 446 47.3
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.5e-91 340.5 357 56.3
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.6e-91 339.7 447 48.1
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.3e-90 337.4 344 54.1
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.7e-90 337.0 413 49.9
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 8.2e-90 334.7 393 50.4
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 1.4e-89 334.0 307 60.3
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 3.1e-89 332.8 459 46.6
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 7.0e-89 331.6 351 53.3
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 1.6e-88 330.5 484 45.0
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 3.5e-88 329.3 428 47.0
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 7.7e-88 328.2 444 44.8
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.0e-87 327.8 473 43.3
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.3e-87 327.4 444 44.8
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.3e-87 327.4 441 46.7
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 5.0e-87 325.5 288 61.1
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 6.5e-87 325.1 460 46.3
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.9e-86 323.6 435 44.8
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 3.2e-86 322.8 442 45.5
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 7.2e-86 321.6 349 53.9
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 1.6e-85 320.5 368 51.9
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 1.6e-85 320.5 368 51.9
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.0e-84 317.8 405 48.6
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.8e-84 317.0 480 41.7
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.3e-84 316.6 358 52.8
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 4.0e-84 315.8 506 41.9
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 6.8e-84 315.1 491 41.5
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 1.2e-83 314.3 491 43.0
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.5e-83 313.9 489 41.3
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 1.5e-83 313.9 498 42.2
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 2.6e-83 313.2 399 48.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.6e-83 313.2 420 49.3
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.4e-83 312.8 498 40.6
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.4e-83 312.4 424 45.3
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 4.4e-83 312.4 433 47.1
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 5.7e-83 312.0 428 45.6
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 5.7e-83 312.0 491 41.3
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 4.8e-82 308.9 400 48.2
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.1e-81 307.8 329 55.0
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-81 307.4 436 44.5
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.4e-81 307.4 392 46.9
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 2.4e-81 306.6 525 39.6
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.4e-81 306.6 482 42.1
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 3.1e-81 306.2 290 58.3
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 4.1e-81 305.8 399 48.9
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 7.0e-81 305.1 381 49.6
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 7.7e-80 301.6 434 45.4
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.9e-79 299.7 389 46.8
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 6.5e-79 298.5 401 46.9
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 8.5e-79 298.1 469 42.4
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 1.9e-78 297.0 356 52.2
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 9.4e-78 294.7 380 48.2
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.2e-77 294.3 510 40.0
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 8.0e-77 291.6 442 43.9
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 8.0e-77 291.6 349 50.1
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 3.0e-76 289.7 444 43.7
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 4.0e-76 289.3 447 44.3
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 5.2e-76 288.9 309 50.2
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 6.8e-76 288.5 429 45.2
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 2.6e-75 286.6 473 41.4
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 5.7e-75 285.4 276 56.9
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.7e-74 283.9 468 41.0
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.1e-73 281.2 419 42.5
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 5.4e-73 278.9 394 46.2
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.0e-72 276.9 494 38.3
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 3.5e-72 276.2 423 43.0
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 8.6e-71 271.6 471 38.0
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 2.5e-70 270.0 450 41.1
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 1.6e-69 267.3 307 51.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 6.1e-69 265.4 498 40.6
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 8.0e-69 265.0 374 43.3
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-68 263.8 332 50.6
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.8e-68 261.9 498 37.8
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.8e-68 261.9 498 37.8
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.1e-65 254.6 438 39.5
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 7.0e-65 251.9 465 38.7
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 9.2e-65 251.5 492 35.4
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 3.3e-62 243.0 357 44.3
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 9.5e-62 241.5 311 48.2
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 4.7e-61 239.2 576 32.3
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 9.8e-59 231.5 164 70.1
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 2.9e-58 229.9 587 32.2
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 6.6e-55 218.8 345 42.3
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 2.8e-53 213.4 139 73.4
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.5e-46 190.3 149 66.4
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.6e-45 187.6 141 66.7
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 4.7e-45 186.0 360 38.3
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 4.7e-45 186.0 316 43.0
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.6e-40 171.0 439 34.4
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 5.6e-38 162.5 213 50.7
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 3.1e-36 156.8 110 70.0
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 1.6e-29 134.4 364 29.7
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 7.6e-27 125.6 166 46.4
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.1e-20 105.1 64 78.1
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 6.9e-20 102.4 56 83.9
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 6.7e-15 85.9 313 29.7
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.1e-14 85.1 81 50.6
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 4.8e-13 79.7 62 53.2


User provided reference genes

Program Settings