Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0048691 Helianthus annuus HOM05D011053 ORTHO05D010547 6.7e-298 1026.5 506 100.0
HanXRQChr11g0327291 Helianthus annuus HOM05D011053 ORTHO05D010547 1.3e-59 235.0 417 34.8
HanXRQChr05g0159821 Helianthus annuus HOM05D011053 ORTHO05D010547 3.3e-55 220.3 486 31.7
HanXRQChr04g0115711 Helianthus annuus HOM05D011053 ORTHO05D010547 3.6e-49 200.3 389 32.9
HanXRQChr02g0040311 Helianthus annuus HOM05D008839 ORTHO05D010547 3.3e-47 193.7 378 32.3
HanXRQChr07g0197521 Helianthus annuus HOM05D011053 ORTHO05D010547 3.1e-45 187.2 488 28.9
HanXRQChr15g0489831 Helianthus annuus HOM05D008839 ORTHO05D010547 3.5e-44 183.7 470 28.5
HanXRQChr11g0337461 Helianthus annuus HOM05D011053 ORTHO05D010547 3.8e-43 180.3 442 30.1
HanXRQChr02g0058501 Helianthus annuus HOM05D011053 ORTHO05D010547 1.5e-42 178.3 411 29.2
HanXRQChr08g0225061 Helianthus annuus HOM05D011053 ORTHO05D010547 1.9e-42 177.9 482 28.8
HanXRQChr16g0521991 Helianthus annuus HOM05D008839 ORTHO05D010547 1.6e-41 174.9 494 27.7
HanXRQChr08g0233401 Helianthus annuus HOM05D008839 ORTHO05D010547 2.3e-40 171.0 472 27.5
HanXRQChr04g0126351 Helianthus annuus HOM05D011053 ORTHO05D010547 1.1e-34 152.1 460 27.0
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 5.5e-34 149.8 494 26.5
Lsat_1_v5_gn_1_127421 Lactuca sativa HOM05D052696 ORTHO05D010547 6.3e-30 136.3 241 31.1
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 1.4e-29 135.2 409 24.2
ECA240G0326 Erigeron canadensis HOM05D008839 ORTHO05D010547 2.4e-29 134.4 351 28.5
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 9.1e-29 132.5 400 24.5
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.0e-28 131.3 412 24.5
HanXRQChr03g0088721 Helianthus annuus HOM05D008839 ORTHO05D010547 1.2e-25 122.1 233 32.6
Lsat_1_v5_gn_5_161140 Lactuca sativa HOM05D008839 ORTHO05D010547 8.0e-25 119.4 406 24.4
Lsat_1_v5_gn_9_118901 Lactuca sativa HOM05D008839 ORTHO05D010547 2.3e-24 117.9 427 22.7
Lsat_1_v5_gn_2_98760 Lactuca sativa HOM05D008839 ORTHO05D010547 3.0e-24 117.5 355 24.8
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 5.2e-24 116.7 356 24.2
ECA240G4800 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-23 115.5 393 26.2
Lsat_1_v5_gn_3_43581 Lactuca sativa HOM05D008839 ORTHO05D010547 3.4e-23 114.0 419 24.6
Potri.019G061550 Populus trichocarpa HOM05D006849 ORTHO05D003348 4.4e-23 113.6 314 28.7
Lsat_1_v5_gn_8_68800 Lactuca sativa HOM05D008839 ORTHO05D010547 7.5e-23 112.8 241 30.3
Lsat_1_v5_gn_0_38321 Lactuca sativa HOM05D008839 ORTHO05D010547 6.3e-22 109.8 451 22.2
ECA247G1268 Erigeron canadensis HOM05D000096 ORTHO05D002173 8.3e-22 109.4 411 25.1
Lsat_1_v5_gn_5_58000 Lactuca sativa HOM05D008839 ORTHO05D010547 8.3e-22 109.4 238 30.3
HanXRQChr12g0354851 Helianthus annuus HOM05D011053 ORTHO05D010547 1.1e-21 109.0 161 36.0
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 1.1e-21 109.0 401 23.9
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-21 109.0 449 22.7
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 1.6e-20 105.1 349 26.9
TWI63G1232 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 5.9e-20 103.2 468 24.4
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 1.3e-19 102.1 437 24.3
HanXRQChr06g0172761 Helianthus annuus HOM05D011053 ORTHO05D010547 1.7e-19 101.7 209 30.6
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 3.8e-19 100.5 436 24.5
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 5.0e-19 100.1 427 24.8
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 8.6e-19 99.4 428 24.8
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.5e-18 98.6 303 25.4
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.3e-18 97.1 427 24.6
FAN01G0657 Fragaria x ananassa HOM05D007856 ORTHO05D003348 9.5e-18 95.9 324 23.5
DCAR_031560 Daucus carota HOM05D002907 ORTHO05D014614 1.2e-17 95.5 448 24.3
TPR.G6063 Trifolium pratense HOM05D000096 ORTHO05D000065 2.1e-17 94.7 431 22.7
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 2.8e-17 94.4 329 25.2
HanXRQChr09g0251611 Helianthus annuus HOM05D011053 ORTHO05D010547 2.8e-17 94.4 166 29.5
TWI31G0819 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 3.6e-17 94.0 513 23.0
HanXRQChr10g0285501 Helianthus annuus HOM05D011053 ORTHO05D010547 4.7e-17 93.6 254 30.3
Medtr2g041270 Medicago truncatula HOM05D000824 ORTHO05D002221 4.7e-17 93.6 403 24.6
TWI53G0769 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.0e-16 92.4 393 24.2
TWI77G0313 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.4e-16 92.0 376 23.7
HanXRQChr10g0308621 Helianthus annuus HOM05D008839 ORTHO05D010547 1.8e-16 91.7 187 30.5
DCAR_010742 Daucus carota HOM05D002907 ORTHO05D000065 2.3e-16 91.3 455 24.0
FAN20G3088 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.0e-16 90.9 380 23.9
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 6.8e-16 89.7 290 25.2
HanXRQChr16g0526441 Helianthus annuus HOM05D011053 ORTHO05D010547 8.9e-16 89.4 135 35.6
VMungo1309G1355 Vigna mungo HOM05D000824 ORTHO05D002221 2.0e-15 88.2 448 22.8
DCAR_032054 Daucus carota HOM05D002907 ORTHO05D000065 3.4e-15 87.4 411 25.1
Sp1g27740 Schrenkiella parvula HOM05D000305 ORTHO05D000065 3.4e-15 87.4 387 24.3
TAR629G1891 Trochodendron aralioides HOM05D000824 ORTHO05D000065 3.4e-15 87.4 382 24.1
BcaC05g27392 Brassica carinata HOM05D000313 ORTHO05D000065 7.5e-15 86.3 395 23.3
Duzib160G0267 Durio zibethinus HOM05D002907 ORTHO05D000065 1.3e-14 85.5 298 24.5
Medtr4g070090 Medicago truncatula HOM05D002907 ORTHO05D000065 1.3e-14 85.5 408 24.5
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 1.3e-14 85.5 304 25.0
TWI14G1065 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.2e-14 84.7 310 25.8
BcaB08g35222 Brassica carinata HOM05D000313 ORTHO05D000065 8.3e-14 82.8 398 22.9
DCAR_004276 Daucus carota HOM05D002907 ORTHO05D000065 8.3e-14 82.8 442 23.8
Medtr5g027390 Medicago truncatula HOM05D002907 ORTHO05D000065 8.3e-14 82.8 376 24.5
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 1.1e-13 82.4 206 25.2
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 1.1e-13 82.4 292 26.0
Phvul.009G228500 Phaseolus vulgaris HOM05D000824 ORTHO05D002221 1.4e-13 82.0 405 23.7
COL.COLO4_09218 Corchorus olitorius HOM05D007876 ORTHO05D007430 2.4e-13 81.3 353 24.6
Lsat_1_v5_gn_9_31800 Lactuca sativa HOM05D008839 ORTHO05D010547 3.2e-13 80.9 119 34.5
GSVIVG01015111001 Vitis vinifera HOM05D000824 ORTHO05D002221 4.1e-13 80.5 408 22.3
arahy.Tifrunner.gnm1.ann1.N18BUU Arachis hypogaea HOM05D002441 ORTHO05D008317 5.4e-13 80.1 332 24.1
ECA238G0409 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.4e-13 80.1 136 32.4
TPR.G10916 Trifolium pratense HOM05D000824 ORTHO05D002221 7.0e-13 79.7 303 24.8
Ca_13349_v3 Cicer arietinum L. HOM05D000824 ORTHO05D002221 9.2e-13 79.3 397 23.7
Potri.003G004401 Populus trichocarpa HOM05D006849 ORTHO05D003348 9.2e-13 79.3 216 29.2
DCAR_010369 Daucus carota HOM05D012849 ORTHO05D000065 1.2e-12 79.0 336 24.4
Lsat_1_v5_gn_3_127341 Lactuca sativa HOM05D008839 ORTHO05D010547 1.2e-12 79.0 310 21.6
Gohir.A13G191600 Gossypium hirsutum HOM05D000824 ORTHO05D002221 1.6e-12 78.6 406 21.9
DCAR_007681 Daucus carota HOM05D002907 ORTHO05D000065 2.7e-12 77.8 398 23.6
SEGI_19719 Sequoiadendron giganteum HOM05D000824 ORTHO05D010437 2.7e-12 77.8 289 26.0
SEGI_35352 Sequoiadendron giganteum HOM05D000824 ORTHO05D010437 2.7e-12 77.8 289 26.0
Gorai.013G225700 Gossypium raimondii HOM05D000824 ORTHO05D002221 3.5e-12 77.4 406 22.2
Lsat_1_v5_gn_8_146240 Lactuca sativa HOM05D008839 ORTHO05D010547 4.6e-12 77.0 193 25.4
Lsat_1_v5_gn_9_116400 Lactuca sativa HOM05D011053 ORTHO05D010547 4.6e-12 77.0 146 34.2
QL07p006362 Quercus lobata HOM05D002907 ORTHO05D005554 5.9e-12 76.6 229 27.1
DCAR_031592 Daucus carota HOM05D002907 ORTHO05D000065 1.0e-11 75.9 237 27.0
HanXRQChr16g0512851 Helianthus annuus HOM05D008839 ORTHO05D010547 1.0e-11 75.9 127 33.9
AagrBONN_evm.TU.Sc2ySwM_362.479 Anthoceros agrestis HOM05D000824 ORTHO05D002221 5.0e-11 73.6 288 22.9
RcHm_v2.0_Chr5g0053321 Rosa chinensis HOM05D006849 ORTHO05D003348 5.0e-11 73.6 238 25.6
Sp5g17720 Schrenkiella parvula HOM05D000305 ORTHO05D000065 5.0e-11 73.6 345 23.8
Lsat_1_v5_gn_8_53420 Lactuca sativa HOM05D000147 ORTHO05D001254 2.5e-10 71.2 509 20.4
SMO115G0028 Selaginella moellendorffii HOM05D000824 ORTHO05D002221 3.3e-10 70.9 347 21.0
SMO119G0217 Selaginella moellendorffii HOM05D000824 ORTHO05D002221 3.3e-10 70.9 347 21.0
C06p14800 Brassica napus HOM05D000313 ORTHO05D000065 5.6e-10 70.1 472 21.8
Carub.0076s0001 Capsella rubella HOM05D000353 ORTHO05D000174 7.3e-10 69.7 422 22.3
DCAR_002142 Daucus carota HOM05D002492 ORTHO05D002621 1.6e-09 68.6 309 22.3
Lsat_1_v5_gn_2_104321 Lactuca sativa HOM05D008839 ORTHO05D010547 1.6e-09 68.6 195 24.6
Medtr3g047950 Medicago truncatula HOM05D000824 ORTHO05D002221 1.6e-09 68.6 323 22.9
Potri.001G320601 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.6e-09 68.6 180 28.3
FAN28G1495 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.1e-09 68.2 183 25.7
DCAR_031459 Daucus carota HOM05D002492 ORTHO05D002621 3.6e-09 67.4 363 20.4
Aqoxy3G02886 Aquilegia oxysepala HOM05D003414 ORTHO05D003913 4.7e-09 67.0 254 25.6
QL07p005779 Quercus lobata HOM05D002907 ORTHO05D005554 6.2e-09 66.6 176 28.4
DCAR_019115 Daucus carota HOM05D002492 ORTHO05D002621 1.8e-08 65.1 236 22.9
Carub.0004s0702 Capsella rubella HOM05D000353 ORTHO05D000174 2.3e-08 64.7 381 23.1
SEGI_35552 Sequoiadendron giganteum HOM05D000824 ORTHO05D002221 3.1e-08 64.3 290 22.1
Lsat_1_v5_gn_0_6721 Lactuca sativa HOM05D008839 ORTHO05D010547 4.0e-08 63.9 106 31.1
PSO210G7321 Papaver somniferum HOM05D002907 ORTHO05D013727 4.0e-08 63.9 298 23.2
DCAR_018168 Daucus carota HOM05D002492 ORTHO05D002621 5.2e-08 63.5 419 20.8
Nitab4.5_0007533g0040 Nicotiana tabacum HOM05D002441 ORTHO05D008317 5.2e-08 63.5 235 25.1
DCAR_024727 Daucus carota HOM05D002492 ORTHO05D002621 6.8e-08 63.2 433 22.2
DCAR_029864 Daucus carota HOM05D002907 ORTHO05D005554 6.8e-08 63.2 280 23.9
DCAR_030141 Daucus carota HOM05D002492 ORTHO05D002621 6.8e-08 63.2 425 20.5
DCAR_010813 Daucus carota HOM05D002492 ORTHO05D002621 1.2e-07 62.4 433 22.2
DCAR_020954 Daucus carota HOM05D002492 ORTHO05D002621 1.2e-07 62.4 445 20.4
PSO801G0386 Papaver somniferum HOM05D002907 ORTHO05D013727 1.2e-07 62.4 218 24.3
PSO801G0439 Papaver somniferum HOM05D002907 ORTHO05D013727 1.2e-07 62.4 218 24.3
MD04G1002000 Malus domestica HOM05D029265 ORTHO05D003348 2.0e-07 61.6 183 24.0
C08p15350 Brassica napus HOM05D000313 ORTHO05D000065 2.6e-07 61.2 351 22.2
PSO447G0118 Papaver somniferum HOM05D002907 ORTHO05D013727 3.4e-07 60.8 324 22.8
Carub.0008s0271 Capsella rubella HOM05D000824 ORTHO05D002221 5.8e-07 60.1 372 20.4
THA.LOC104806192 Tarenaya hassleriana HOM05D000824 ORTHO05D002221 5.8e-07 60.1 433 20.3
CARHR176670 Cardamine hirsuta HOM05D000824 ORTHO05D002221 7.5e-07 59.7 328 19.8
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 7.5e-07 59.7 380 20.3
BcaB07g33649 Brassica carinata HOM05D000305 ORTHO05D000065 9.8e-07 59.3 201 25.9
Sp6g12950 Schrenkiella parvula HOM05D000305 ORTHO05D000065 1.3e-06 58.9 242 24.8
Nitab4.5_0003787g0030 Nicotiana tabacum HOM05D002441 ORTHO05D002376 1.7e-06 58.5 207 25.1
DCAR_024134 Daucus carota HOM05D002492 ORTHO05D002621 2.2e-06 58.2 175 25.7
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.2e-06 58.2 258 21.7
Lsat_1_v5_gn_2_127581 Lactuca sativa HOM05D008839 ORTHO05D010547 2.2e-06 58.2 94 35.1
TAR063G0004 Trochodendron aralioides HOM05D000824 ORTHO05D010357 2.2e-06 58.2 180 21.1
TAR091G0002 Trochodendron aralioides HOM05D000824 ORTHO05D000001 2.2e-06 58.2 180 21.1
DCAR_024381 Daucus carota HOM05D002492 ORTHO05D002621 2.9e-06 57.8 476 19.5
Lsat_1_v5_gn_3_80000 Lactuca sativa HOM05D052696 ORTHO05D010547 2.9e-06 57.8 75 38.7
Carub.0006s2622 Capsella rubella HOM05D000353 ORTHO05D000174 3.7e-06 57.4 412 18.7
COL.COLO4_35275 Corchorus olitorius HOM05D007876 ORTHO05D007430 3.7e-06 57.4 226 28.3
ECA233G0787 Erigeron canadensis HOM05D000096 ORTHO05D000647 8.3e-06 56.2 83 33.7
FAN12G1343 Fragaria x ananassa HOM05D007856 ORTHO05D003348 8.3e-06 56.2 195 26.7


User provided reference genes

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