Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 1.0e-249 866.7 597 100.0
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 4.2e-174 615.5 600 74.7
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 2.4e-145 520.0 595 69.4
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.8e-132 477.2 571 65.3
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 2.4e-121 440.3 590 54.4
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 5.4e-121 439.1 584 58.4
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 1.3e-119 434.5 576 59.5
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 6.6e-119 432.2 579 60.8
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 1.5e-118 431.0 569 57.1
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 1.6e-117 427.6 584 60.3
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 2.0e-115 420.6 576 56.1
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 3.4e-115 419.9 581 61.3
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 5.8e-115 419.1 618 54.9
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 5.4e-113 412.5 597 46.4
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 5.4e-113 412.5 576 57.8
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 7.0e-113 412.1 576 60.9
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 1.2e-112 411.4 576 56.6
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 6.0e-112 409.1 586 61.6
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 2.3e-111 407.1 579 57.3
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 3.9e-111 406.4 571 59.0
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 1.9e-110 404.1 582 57.2
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.5e-110 403.7 603 45.1
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 3.3e-110 403.3 617 47.6
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 5.6e-110 402.5 576 61.6
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 5.6e-110 402.5 586 60.4
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 1.6e-109 401.0 623 54.3
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.1e-109 400.6 603 40.3
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 2.8e-109 400.2 615 56.4
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 2.8e-109 400.2 580 58.4
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 8.9e-108 395.2 596 59.4
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 1.2e-107 394.8 569 59.1
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 2.6e-107 393.7 582 59.5
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 4.4e-107 392.9 584 56.0
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 7.5e-107 392.1 582 52.2
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 1.1e-105 388.3 607 47.0
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 1.1e-105 388.3 612 55.6
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 3.2e-105 386.7 511 59.9
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 4.6e-104 382.9 613 48.9
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 6.0e-104 382.5 572 52.6
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 1.7e-103 380.9 607 48.3
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 2.3e-103 380.6 609 54.5
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 5.1e-103 379.4 579 50.1
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 7.3e-102 375.6 579 54.4
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 1.2e-101 374.8 575 46.6
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 8.1e-101 372.1 604 46.2
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 8.9e-100 368.6 607 57.2
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 1.2e-99 368.2 584 56.7
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 4.4e-99 366.3 579 54.9
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 6.4e-98 362.5 589 47.9
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 4.2e-97 359.8 574 47.6
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 5.4e-97 359.4 582 53.8
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 6.6e-95 352.4 574 54.9
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 1.1e-94 351.7 613 47.8
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 4.3e-94 349.7 584 54.6
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 2.1e-93 347.4 523 57.0
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 6.2e-93 345.9 580 53.3
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 3.1e-92 343.6 593 55.6
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 1.1e-89 335.1 589 52.3
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 1.4e-89 334.7 587 56.7
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 7.1e-89 332.4 361 61.2
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 6.0e-88 329.3 589 51.4
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 5.1e-87 326.2 532 54.9
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 1.9e-86 324.3 575 53.4
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 9.6e-86 322.0 503 54.9
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 4.8e-85 319.7 576 54.5
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 3.1e-84 317.0 575 55.7
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 5.3e-84 316.2 581 54.6
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 9.0e-84 315.5 458 61.1
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 5.8e-83 312.8 529 49.1
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 1.7e-82 311.2 581 54.4
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 8.4e-82 308.9 598 52.7
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.9e-81 307.8 513 57.7
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 9.3e-81 305.4 576 51.2
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 9.3e-81 305.4 576 51.2
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 3.0e-79 300.4 524 49.6
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 1.9e-78 297.7 584 51.9
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 5.6e-78 296.2 582 50.3
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 5.6e-78 296.2 582 50.3
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 3.7e-77 293.5 613 44.7
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 6.2e-77 292.7 493 57.2
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 6.9e-76 289.3 582 50.0
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 1.4e-73 281.6 542 55.9
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.4e-73 281.6 386 53.1
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 2.5e-73 280.8 585 51.8
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 3.7e-69 266.9 577 44.4
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 2.0e-67 261.2 584 47.8
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 1.9e-65 254.6 572 53.0
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 5.5e-65 253.1 574 52.4
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 5.1e-63 246.5 369 60.7
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 3.7e-61 240.4 575 51.3
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 6.3e-61 239.6 448 56.0
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 3.1e-60 237.3 579 48.9
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 9.0e-60 235.7 572 50.0
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 2.2e-58 231.1 582 49.5
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 6.5e-58 229.6 580 42.9
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 8.5e-58 229.2 573 41.0
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 1.2e-56 225.3 518 45.9
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.3e-53 215.3 588 36.1
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.3e-53 215.3 588 36.1
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 4.8e-53 213.4 515 28.2
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 1.1e-52 212.2 580 50.3
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 2.0e-51 208.0 508 43.5
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 3.6e-48 197.2 522 48.3
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 3.5e-27 127.5 334 29.6
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 3.8e-26 124.0 157 45.9
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 5.2e-23 113.6 209 45.9
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 8.8e-23 112.8 157 48.4
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 1.8e-20 105.1 313 46.6
HanXRQChr09g0272151 Helianthus annuus HOM05D006572 ORTHO05D008181 3.8e-18 97.4 64 79.7
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.0e-10 72.8 208 51.0
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 1.6e-08 65.5 57 57.9
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 4.7e-08 63.9 57 56.1
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 2.3e-07 61.6 468 36.5


User provided reference genes

Program Settings