Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0047711 Helianthus annuus HOM05D002819 ORTHO05D003207 1.5e-40 169.1 86 100.0
HanXRQChr10g0304401 Helianthus annuus HOM05D002819 ORTHO05D003207 8.2e-31 136.7 85 77.6
HanXRQChr15g0491051 Helianthus annuus HOM05D002819 ORTHO05D003207 5.3e-30 134.0 85 74.1
HanXRQChr10g0304371 Helianthus annuus HOM05D002819 ORTHO05D003207 1.4e-25 119.4 87 69.0
HanXRQChr10g0304381 Helianthus annuus HOM05D002819 ORTHO05D003207 3.0e-25 118.2 85 69.4
ECA233G1225 Erigeron canadensis HOM05D002819 ORTHO05D003207 2.0e-24 115.5 85 65.9
HanXRQChr07g0186991 Helianthus annuus HOM05D002819 ORTHO05D003207 4.4e-24 114.4 85 65.9
HanXRQChr15g0491061 Helianthus annuus HOM05D002819 ORTHO05D003207 1.3e-23 112.8 85 63.5
ECA233G3407 Erigeron canadensis HOM05D002819 ORTHO05D003207 3.1e-22 108.2 85 65.9
Lsat_1_v5_gn_6_10520 Lactuca sativa HOM05D002819 ORTHO05D003207 4.1e-22 107.8 85 63.5
Cc02_g00430 Coffea canephora HOM05D002819 ORTHO05D003207 3.1e-14 81.6 84 51.2
SGA_v2.0_scaffold50G18432 Striga asiatica HOM05D002819 ORTHO05D003207 4.1e-14 81.3 86 48.8
Os06g0114700 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 2.7e-13 78.6 83 54.2
Rhsim09G0212000 Rhododendron simsii HOM05D002819 ORTHO05D003207 2.7e-13 78.6 86 47.7
Atru.chr12.2014 Acer truncatum HOM05D002819 ORTHO05D003207 3.5e-13 78.2 84 50.0
CSS0046349 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 7.7e-13 77.0 86 45.3
CAN.G303.71 Capsicum annuum HOM05D002819 ORTHO05D003207 7.7e-13 77.0 86 43.0
Migut.F00954 Erythranthe guttata HOM05D002819 ORTHO05D003207 7.7e-13 77.0 86 46.5
Peaxi162Scf00133g00916 Petunia axillaris HOM05D002819 ORTHO05D003207 1.0e-12 76.6 86 45.3
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.7e-12 75.9 86 46.5
DCAR_010549 Daucus carota HOM05D002819 ORTHO05D003207 1.7e-12 75.9 84 48.8
QL09p025989 Quercus lobata HOM05D002819 ORTHO05D003207 1.7e-12 75.9 84 47.6
Actinidia08734 Actinidia chinensis HOM05D002819 ORTHO05D003207 2.3e-12 75.5 84 46.4
Actinidia28266 Actinidia chinensis HOM05D002819 ORTHO05D003207 2.3e-12 75.5 86 45.3
MD01G1233300 Malus domestica HOM05D002819 ORTHO05D003207 2.9e-12 75.1 86 44.2
vmacro06494 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 2.9e-12 75.1 83 45.8
DCAR_014571 Daucus carota HOM05D002819 ORTHO05D003207 1.1e-11 73.2 84 45.2
Eucgr.A02959 Eucalyptus grandis HOM05D002819 ORTHO05D003207 1.1e-11 73.2 84 47.6
Hma1.2p1_0758F.1_g213570 Hydrangea macrophylla HOM05D002819 ORTHO05D003207 1.1e-11 73.2 86 44.2
PGR042G3857 Punica granatum HOM05D002819 ORTHO05D003207 1.1e-11 73.2 84 46.4
CiPaw.05G236700 Carya illinoinensis HOM05D002819 ORTHO05D003207 1.5e-11 72.8 84 46.4
CiPaw.06G020000 Carya illinoinensis HOM05D002819 ORTHO05D003207 1.5e-11 72.8 84 50.0
Gorai.004G260000 Gossypium raimondii HOM05D002819 ORTHO05D003207 1.5e-11 72.8 79 50.6
Manes.08G164700 Manihot esculenta HOM05D002819 ORTHO05D003207 1.5e-11 72.8 84 46.4
SalBow4G1237 Salvia bowleyana HOM05D002819 ORTHO05D003207 1.9e-11 72.4 86 45.3
Zm00001eb378900 Zea mays HOM05D002819 ORTHO05D003207 1.9e-11 72.4 84 50.0
ClCG01G005010 Citrullus lanatus HOM05D002819 ORTHO05D003207 2.5e-11 72.0 84 42.9
MELO3C005433.2 Cucumis melo HOM05D002819 ORTHO05D003207 2.5e-11 72.0 84 42.9
CsaV3_5G005270 Cucumis sativus L. HOM05D002819 ORTHO05D003207 2.5e-11 72.0 84 42.9
Nitab4.5_0000021g0320 Nicotiana tabacum HOM05D002819 ORTHO05D003207 2.5e-11 72.0 79 48.1
Potri.019G048300 Populus trichocarpa HOM05D002819 ORTHO05D003207 2.5e-11 72.0 86 44.2
QL09p025978 Quercus lobata HOM05D002819 ORTHO05D003207 2.5e-11 72.0 88 42.0
Gohir.A08G223400 Gossypium hirsutum HOM05D002819 ORTHO05D003207 3.3e-11 71.6 78 51.3
Gohir.A08G223480 Gossypium hirsutum HOM05D002819 ORTHO05D003207 3.3e-11 71.6 79 50.6
Gohir.D08G243801 Gossypium hirsutum HOM05D002819 ORTHO05D003207 3.3e-11 71.6 87 49.4
Gorai.004G259700 Gossypium raimondii HOM05D002819 ORTHO05D003207 3.3e-11 71.6 87 48.3
Solyc03g096860.3 Solanum lycopersicum HOM05D002819 ORTHO05D003207 4.2e-11 71.2 86 41.9
PGSC0003DMG400000568 Solanum tuberosum HOM05D002819 ORTHO05D003207 4.2e-11 71.2 86 41.9
TAR629G2358 Trochodendron aralioides HOM05D002819 ORTHO05D003207 4.2e-11 71.2 84 46.4
Peaxi162Scf01650g00038 Petunia axillaris HOM05D002819 ORTHO05D003207 5.5e-11 70.9 79 46.8
Sopen03g027610 Solanum pennellii HOM05D002819 ORTHO05D003207 5.5e-11 70.9 86 40.7
Duzib128G0634 Durio zibethinus HOM05D002819 ORTHO05D003207 7.2e-11 70.5 85 42.4
Gohir.D08G243701 Gossypium hirsutum HOM05D002819 ORTHO05D003207 7.2e-11 70.5 70 52.9
Gorai.004G259600 Gossypium raimondii HOM05D002819 ORTHO05D003207 7.2e-11 70.5 70 52.9
Sabra13G0071600 Salix brachista HOM05D002819 ORTHO05D003207 7.2e-11 70.5 79 48.1
ClCG07G017290 Citrullus lanatus HOM05D002819 ORTHO05D003207 9.5e-11 70.1 83 43.4
Lalb_Chr19g0139871 Lupinus albus HOM05D002819 ORTHO05D003207 9.5e-11 70.1 83 44.6
Rhsim03G0220200 Rhododendron simsii HOM05D002819 ORTHO05D003207 9.5e-11 70.1 78 46.2
Ah.13g071250 Amaranthus hybridus HOM05D002819 ORTHO05D003207 1.2e-10 69.7 83 44.6
Eucgr.G01794 Eucalyptus grandis HOM05D002819 ORTHO05D003207 1.2e-10 69.7 84 47.6
Glyma.11G092900 Glycine max HOM05D002819 ORTHO05D003207 1.2e-10 69.7 79 45.6
PGR031G0062 Punica granatum HOM05D002819 ORTHO05D003207 1.6e-10 69.3 84 45.2
unitig_578.g16665 Utricularia gibba HOM05D002819 ORTHO05D003207 1.6e-10 69.3 86 41.9
Duzib106G1872 Durio zibethinus HOM05D002819 ORTHO05D003207 2.1e-10 68.9 85 42.4
Medtr4g077250 Medicago truncatula HOM05D002819 ORTHO05D003207 2.1e-10 68.9 79 46.8
SalBow2G3364 Salvia bowleyana HOM05D002819 ORTHO05D003207 2.1e-10 68.9 83 43.4
GSVIVG01024453001 Vitis vinifera HOM05D002819 ORTHO05D003207 2.1e-10 68.9 84 46.4
Prupe.2G323600 Prunus persica HOM05D002819 ORTHO05D003207 2.8e-10 68.6 83 43.4
TPR.G29504 Trifolium pratense HOM05D002819 ORTHO05D003207 2.8e-10 68.6 79 46.8
ATR0829G057 Amborella trichopoda HOM05D002819 ORTHO05D003207 3.6e-10 68.2 84 42.9
Haze_00589 Corylus avellana HOM05D002819 ORTHO05D003207 3.6e-10 68.2 82 46.3
DCAR_004229 Daucus carota HOM05D002819 ORTHO05D003207 3.6e-10 68.2 82 47.6
Dinv29175 Davidia involucrata HOM05D002819 ORTHO05D003207 3.6e-10 68.2 84 45.2
Duzib177G0623 Durio zibethinus HOM05D002819 ORTHO05D003207 3.6e-10 68.2 79 45.6
Gohir.A02G139200 Gossypium hirsutum HOM05D002819 ORTHO05D003207 3.6e-10 68.2 79 45.6
Gohir.D03G049900 Gossypium hirsutum HOM05D002819 ORTHO05D003207 3.6e-10 68.2 79 45.6
Gorai.003G051400 Gossypium raimondii HOM05D002819 ORTHO05D003207 3.6e-10 68.2 79 45.6
THA.LOC104820872 Tarenaya hassleriana HOM05D002819 ORTHO05D003207 3.6e-10 68.2 86 43.0
EL10Ac3g05101 Beta vulgaris HOM05D002819 ORTHO05D003207 4.7e-10 67.8 86 41.9
MBI04_g21136_MAGBIO Magnolia biondii HOM05D002819 ORTHO05D003207 4.7e-10 67.8 84 45.2
Psat7g171160 Pisum sativum HOM05D002819 ORTHO05D003207 4.7e-10 67.8 79 45.6
TWI34G1962 Tripterygium wilfordii HOM05D002819 ORTHO05D003207 4.7e-10 67.8 84 42.9
VMungo1127G1411 Vigna mungo HOM05D002819 ORTHO05D003207 4.7e-10 67.8 79 44.3
CDE02G0938 Ceratophyllum demersum HOM05D002819 ORTHO05D003207 6.1e-10 67.4 81 39.5
MD07G1305500 Malus domestica HOM05D002819 ORTHO05D003207 6.1e-10 67.4 83 42.2
Carub.0006s1540 Capsella rubella HOM05D002819 ORTHO05D003207 8.0e-10 67.0 87 42.5
Cfa015897 Carpinus fangiana HOM05D002819 ORTHO05D003207 8.0e-10 67.0 78 48.7
Nn1g02013 Nelumbo nucifera HOM05D002819 ORTHO05D003207 8.0e-10 67.0 86 45.3
Ah.13g071280 Amaranthus hybridus HOM05D002819 ORTHO05D003207 1.0e-09 66.6 83 43.4
AL6G28260 Arabidopsis lyrata HOM05D002819 ORTHO05D003207 1.0e-09 66.6 86 41.9
Gohir.A08G223432 Gossypium hirsutum HOM05D002819 ORTHO05D003207 1.0e-09 66.6 77 46.8
Mapoly0007s0269 Marchantia polymorpha HOM05D002819 ORTHO05D003207 1.0e-09 66.6 74 43.2
PSO063G1725 Papaver somniferum HOM05D002819 ORTHO05D003207 1.0e-09 66.6 84 45.2
Thecc.05G207400 Theobroma cacao HOM05D002819 ORTHO05D003207 1.0e-09 66.6 79 48.1
Lj3g0016389 Lotus japonicus HOM05D002819 ORTHO05D003207 1.4e-09 66.2 79 45.6
Os05g0435100 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 1.4e-09 66.2 78 41.0
Phvul.011G021600 Phaseolus vulgaris HOM05D002819 ORTHO05D003207 1.4e-09 66.2 79 43.0
Aa31LG11G12450 Aethionema arabicum HOM05D000498 ORTHO05D003207 1.8e-09 65.9 86 44.2
arahy.Tifrunner.gnm1.ann1.QIP5TL Arachis hypogaea HOM05D002819 ORTHO05D003207 1.8e-09 65.9 80 42.5
arahy.Tifrunner.gnm1.ann1.VUM9KL Arachis hypogaea HOM05D002819 ORTHO05D003207 1.8e-09 65.9 80 42.5
CANSAT21G1003 Cannabis sativa HOM05D002819 ORTHO05D003207 1.8e-09 65.9 79 48.1
CiPaw.06G020100 Carya illinoinensis HOM05D002819 ORTHO05D003207 1.8e-09 65.9 104 36.5
Nn3g19275 Nelumbo nucifera HOM05D002819 ORTHO05D003207 1.8e-09 65.9 79 45.6
Glyma.12G019200 Glycine max HOM05D002819 ORTHO05D003207 3.0e-09 65.1 79 43.0
SEGI_02210 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 3.0e-09 65.1 84 40.5
TAR374G1715 Trochodendron aralioides HOM05D002819 ORTHO05D003207 3.0e-09 65.1 84 45.2
AT5G17210 Arabidopsis thaliana HOM05D002819 ORTHO05D003207 4.0e-09 64.7 86 39.5
Eucgr.K00096 Eucalyptus grandis HOM05D002819 ORTHO05D003207 4.0e-09 64.7 83 43.4
Hund21088 Selenicereus undatus HOM05D002819 ORTHO05D003207 5.2e-09 64.3 86 43.0
Zm00001eb289190 Zea mays HOM05D002819 ORTHO05D003207 5.2e-09 64.3 78 35.9
MD01G1233400 Malus domestica HOM05D002819 ORTHO05D003207 6.8e-09 63.9 82 42.7
DCAR_004230 Daucus carota HOM05D000083 ORTHO05D003582 8.9e-09 63.5 82 45.1
Eucgr.K00098 Eucalyptus grandis HOM05D002819 ORTHO05D003207 8.9e-09 63.5 83 44.6
Eucgr.L02108 Eucalyptus grandis HOM05D002819 ORTHO05D003207 8.9e-09 63.5 83 44.6
RcHm_v2.0_Chr1g0383821 Rosa chinensis HOM05D002819 ORTHO05D003207 8.9e-09 63.5 83 39.8
EL10Ac4g09322 Beta vulgaris HOM05D002819 ORTHO05D003207 1.2e-08 63.2 75 46.7
FvH4_7g33561 Fragaria vesca HOM05D002819 ORTHO05D003207 1.2e-08 63.2 83 41.0
FAN01G0524 Fragaria x ananassa HOM05D000526 ORTHO05D000956 1.2e-08 63.2 83 41.0
FAN10G2719 Fragaria x ananassa HOM05D000526 ORTHO05D000956 1.2e-08 63.2 83 41.0
SMO201G0204 Selaginella moellendorffii HOM05D002819 ORTHO05D003207 1.2e-08 63.2 78 42.3
vmacro10181 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 1.5e-08 62.8 99 36.4
HanXRQChr03g0086951 Helianthus annuus HOM05D002819 ORTHO05D003207 2.0e-08 62.4 73 43.8
arahy.Tifrunner.gnm1.ann1.QNZF80 Arachis hypogaea HOM05D002819 ORTHO05D003207 2.6e-08 62.0 83 38.6
Os05g0434800 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 2.6e-08 62.0 78 38.5
Aqoxy3G02055 Aquilegia oxysepala HOM05D002819 ORTHO05D003207 3.4e-08 61.6 84 41.7
BcaNung00420 Brassica carinata HOM05D002819 ORTHO05D003207 3.4e-08 61.6 86 39.5
DCAR_020399 Daucus carota HOM05D002819 ORTHO05D003207 3.4e-08 61.6 82 42.7
Os05g0434600 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 3.4e-08 61.6 79 39.2
Sc19g0000260 Simmondsia chinensis HOM05D002819 ORTHO05D003207 3.4e-08 61.6 84 40.5
arahy.Tifrunner.gnm1.ann1.C27XEM Arachis hypogaea HOM05D002819 ORTHO05D003207 4.4e-08 61.2 83 38.6
Sc19g0001530 Simmondsia chinensis HOM05D002819 ORTHO05D003207 4.4e-08 61.2 83 39.8
CARHR196000 Cardamine hirsuta HOM05D002819 ORTHO05D003207 5.7e-08 60.8 86 40.7
AUR62000884 Chenopodium quinoa HOM05D002819 ORTHO05D003207 7.5e-08 60.5 84 45.2
BcaNung00421 Brassica carinata HOM05D002819 ORTHO05D003207 9.8e-08 60.1 86 41.9
DCAR_002473 Daucus carota HOM05D002819 ORTHO05D003207 9.8e-08 60.1 78 42.3
FAN10G1049 Fragaria x ananassa HOM05D000526 ORTHO05D000956 9.8e-08 60.1 83 41.0
Lj3A890T57 Lonicera japonica HOM05D002819 ORTHO05D003207 9.8e-08 60.1 86 39.5
A10p22180 Brassica napus HOM05D002819 ORTHO05D003207 1.3e-07 59.7 89 38.2
BraA10t44277Z Brassica rapa HOM05D002819 ORTHO05D003207 1.3e-07 59.7 89 38.2
CDE01G0571 Ceratophyllum demersum HOM05D002819 ORTHO05D003207 1.3e-07 59.7 67 49.3
Lsat_1_v5_gn_0_46680 Lactuca sativa HOM05D002819 ORTHO05D003207 1.3e-07 59.7 75 38.7
Lsat_1_v5_gn_6_89361 Lactuca sativa HOM05D002819 ORTHO05D003207 1.3e-07 59.7 75 38.7
Gohir.D08G243901 Gossypium hirsutum HOM05D002819 ORTHO05D003207 1.7e-07 59.3 71 45.1
Gorai.004G259800 Gossypium raimondii HOM05D002819 ORTHO05D003207 1.7e-07 59.3 71 45.1
Sc19g0001540 Simmondsia chinensis HOM05D002819 ORTHO05D003207 1.7e-07 59.3 79 46.8
Rhsim03G0220000 Rhododendron simsii HOM05D002819 ORTHO05D003207 2.2e-07 58.9 79 43.0
BcaC04g18822 Brassica carinata HOM05D002819 ORTHO05D003207 2.8e-07 58.5 86 38.4
C02p08840 Brassica napus HOM05D000498 ORTHO05D003207 2.8e-07 58.5 86 40.7
C02p08860 Brassica napus HOM05D000498 ORTHO05D003207 2.8e-07 58.5 86 40.7
BolC9t58833H Brassica oleracea HOM05D002819 ORTHO05D003207 2.8e-07 58.5 86 38.4
ECA240G0959 Erigeron canadensis HOM05D002819 ORTHO05D003207 2.8e-07 58.5 88 39.8
Thhalv10014664m.g Eutrema salsugineum HOM05D002819 ORTHO05D003207 2.8e-07 58.5 86 36.0
Rhsim03G0220100 Rhododendron simsii HOM05D002819 ORTHO05D003207 2.8e-07 58.5 63 50.8
C09p59970 Brassica napus HOM05D002819 ORTHO05D003207 3.7e-07 58.2 86 38.4
CsaV3_4G004490 Cucumis sativus L. HOM05D002819 ORTHO05D003207 3.7e-07 58.2 73 43.8
Sabra19G0057500 Salix brachista HOM05D002819 ORTHO05D003207 3.7e-07 58.2 132 30.3
Sp6g27020 Schrenkiella parvula HOM05D002819 ORTHO05D003207 3.7e-07 58.2 86 41.9
Ah.07g205500 Amaranthus hybridus HOM05D002819 ORTHO05D015278 4.9e-07 57.8 71 39.4
AUR62005090 Chenopodium quinoa HOM05D002819 ORTHO05D003207 4.9e-07 57.8 84 41.7
AUR62028148 Chenopodium quinoa HOM05D002819 ORTHO05D003207 4.9e-07 57.8 78 39.7
Sed0019983 Sechium edule HOM05D002819 ORTHO05D003207 4.9e-07 57.8 84 40.5
A02p04020 Brassica napus HOM05D000498 ORTHO05D003207 8.3e-07 57.0 86 40.7
BolC2t06795H Brassica oleracea HOM05D000498 ORTHO05D000354 8.3e-07 57.0 84 39.3
BraA02t05365Z Brassica rapa HOM05D000498 ORTHO05D003207 8.3e-07 57.0 86 40.7
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 8.3e-07 57.0 77 37.7
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 8.3e-07 57.0 78 37.2
BcaB08g36798 Brassica carinata HOM05D002819 ORTHO05D003207 1.4e-06 56.2 82 40.2
AUR62000882 Chenopodium quinoa HOM05D002819 ORTHO05D003207 1.8e-06 55.8 73 38.4
arahy.Tifrunner.gnm1.ann1.T5MZ8J Arachis hypogaea HOM05D002819 ORTHO05D003207 2.4e-06 55.5 92 40.2
MELO3C017618.2 Cucumis melo HOM05D002819 ORTHO05D003207 2.4e-06 55.5 86 43.0
PSO478G4953 Papaver somniferum HOM05D002819 ORTHO05D003207 3.1e-06 55.1 79 40.5
SEGI_27585 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 3.1e-06 55.1 79 39.2
Ca_04933_v3 Cicer arietinum L. HOM05D002819 ORTHO05D003207 4.1e-06 54.7 101 36.6
PSO478G3060 Papaver somniferum HOM05D002819 ORTHO05D003207 4.1e-06 54.7 73 39.7
PSO478G4335 Papaver somniferum HOM05D002819 ORTHO05D003207 4.1e-06 54.7 79 39.2
vmacro06492 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 4.1e-06 54.7 78 39.7
SEGI_40370 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 5.4e-06 54.3 82 39.0
AUR62006075 Chenopodium quinoa HOM05D002819 ORTHO05D015278 7.0e-06 53.9 69 43.5
Lsat_1_v5_gn_6_88500 Lactuca sativa HOM05D002819 ORTHO05D003207 9.2e-06 53.5 66 48.5
PSO782G4484 Papaver somniferum HOM05D002819 ORTHO05D003207 9.2e-06 53.5 79 38.0


User provided reference genes

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