Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 0.0e+00 1123.2 553 100.0
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 8.7e-275 949.9 541 85.0
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.4e-272 942.6 521 86.6
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.2e-254 882.1 538 78.4
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 2.9e-254 881.7 538 78.3
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 3.6e-252 874.8 538 78.4
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 7.9e-252 873.6 538 77.7
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.5e-250 869.4 538 76.4
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 4.3e-250 867.8 538 77.9
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 7.4e-250 867.1 538 78.3
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.4e-250 867.1 538 77.1
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.7e-250 866.7 554 75.6
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.3e-249 866.3 538 77.7
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.7e-249 865.9 557 75.4
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.2e-249 865.5 538 76.8
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.2e-249 865.5 538 76.6
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.4e-248 862.8 538 76.8
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.4e-248 862.8 538 77.0
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.4e-248 862.1 538 76.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 4.1e-248 861.3 538 76.8
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 5.3e-248 860.9 538 76.0
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 6.9e-248 860.5 538 76.6
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.0e-247 859.0 538 76.4
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 2.6e-247 858.6 538 76.6
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 1.3e-246 856.3 538 77.3
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.3e-246 856.3 556 75.0
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 6.5e-246 854.0 538 76.8
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 8.5e-246 853.6 538 76.2
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 7.2e-245 850.5 538 75.3
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 9.4e-245 850.1 538 75.5
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 9.4e-245 850.1 546 75.5
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 2.1e-244 849.0 538 74.2
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 2.7e-244 848.6 538 74.2
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 6.1e-244 847.4 538 75.3
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 1.0e-243 846.7 538 76.4
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.0e-243 846.7 539 75.9
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.0e-243 846.7 538 75.3
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.4e-243 846.3 508 80.7
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 1.4e-243 846.3 556 74.6
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 3.9e-243 844.7 538 75.8
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.1e-243 844.3 537 74.7
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 5.1e-243 844.3 538 74.9
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 8.8e-243 843.6 538 75.5
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.5e-242 842.8 538 74.7
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 2.0e-242 842.4 538 74.5
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 3.3e-242 841.6 538 75.5
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.3e-242 841.6 538 74.5
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 9.7e-242 840.1 514 78.2
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.7e-241 839.3 538 75.3
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 1.7e-241 839.3 538 75.5
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 3.7e-241 838.2 517 77.4
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 4.8e-241 837.8 538 75.5
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.1e-240 836.6 538 74.9
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.1e-240 836.6 538 74.7
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 1.1e-240 836.6 537 74.5
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 9.1e-240 833.6 550 73.5
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 9.1e-240 833.6 538 74.5
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.0e-239 832.4 538 75.8
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.0e-238 830.1 538 74.0
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 2.9e-238 828.6 537 74.5
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 5.0e-238 827.8 539 74.2
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 6.5e-238 827.4 538 73.4
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 8.5e-238 827.0 538 73.4
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.1e-237 826.6 539 73.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.1e-237 826.6 538 74.7
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 3.2e-237 825.1 542 72.7
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 4.2e-237 824.7 538 74.0
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.2e-236 823.2 539 74.0
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 4.7e-236 821.2 557 72.2
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 6.1e-236 820.8 538 73.6
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 6.1e-236 820.8 542 72.5
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.3e-235 818.9 538 73.8
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 2.3e-235 818.9 545 73.9
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 3.9e-235 818.1 538 72.1
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.1e-234 816.6 538 73.8
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.5e-234 816.2 512 77.3
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 5.7e-234 814.3 538 72.7
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 5.7e-234 814.3 539 73.3
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.7e-233 812.8 539 72.9
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 3.7e-233 811.6 538 73.0
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 6.3e-233 810.8 539 72.7
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.4e-232 809.7 550 71.8
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.6e-231 806.2 537 72.4
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.0e-231 805.8 538 73.4
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 3.5e-231 805.1 537 72.4
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.5e-231 805.1 537 72.3
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 4.5e-231 804.7 537 72.4
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 4.5e-231 804.7 537 71.9
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.9e-231 804.3 537 72.1
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.9e-231 804.3 537 72.1
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.9e-231 804.3 537 72.1
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 3.8e-230 801.6 557 71.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 4.2e-229 798.1 535 71.6
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.2e-229 798.1 543 71.6
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 5.5e-229 797.7 541 72.6
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.2e-228 796.6 539 71.4
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.6e-228 796.2 537 71.1
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.6e-228 795.0 565 68.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 4.7e-228 794.7 543 71.5
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 6.1e-228 794.3 555 70.1
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.8e-227 792.7 540 71.7
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 5.2e-227 791.2 539 71.2
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.4e-224 783.1 581 67.6
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 3.5e-223 778.5 489 76.5
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 2.2e-222 775.8 546 67.9
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.2e-221 771.5 561 68.4
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 5.2e-219 764.6 543 71.6
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 6.8e-219 764.2 539 69.8
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.1e-216 755.4 543 68.9
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 7.7e-215 750.7 537 69.8
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.3e-214 750.0 538 67.5
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.1e-213 746.9 489 72.4
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.5e-213 746.5 581 65.2
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.3e-211 739.2 540 66.7
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 2.2e-209 732.6 538 67.3
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 8.3e-209 730.7 544 64.3
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.4e-208 729.9 538 68.2
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.3e-197 691.8 534 61.8
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 3.4e-194 682.2 428 75.7
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.0e-190 669.1 544 63.1
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.8e-179 633.3 534 58.6
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.1e-175 619.8 536 55.0
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 6.2e-172 608.2 416 72.4
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 7.6e-170 601.3 372 77.2
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 4.8e-164 582.0 372 75.0
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 6.9e-163 578.2 548 55.7
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 5.4e-160 568.5 487 55.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 3.5e-159 565.8 535 54.4
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 5.6e-157 558.5 372 72.8
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 2.1e-151 540.0 323 78.6
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 4.6e-135 485.7 290 77.9
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 6.3e-132 475.3 320 70.0
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.4e-131 474.2 336 68.5
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.4e-131 474.2 321 70.7
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.8e-131 473.8 289 80.6
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 6.1e-119 432.2 268 75.7
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.1e-112 411.4 273 71.8
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 4.0e-110 402.9 273 70.0
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-94 351.7 219 79.9
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.0e-90 337.4 227 72.2
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.9e-88 330.9 219 74.9
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.3e-81 308.1 240 65.8
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 3.9e-73 280.0 249 57.4
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.1e-54 218.8 141 75.9
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.4e-52 209.5 137 73.0
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.1e-51 208.8 203 54.2
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.4e-51 207.6 139 71.9
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.1e-50 204.5 138 71.0
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.0e-50 203.0 139 70.5
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.9e-46 189.5 128 71.1
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.4e-35 155.2 98 73.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 1.8e-33 148.3 98 70.4
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.7e-28 131.7 116 58.6
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 2.7e-26 124.4 57 93.0
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-20 105.5 62 74.2
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.2e-20 104.8 62 72.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 8.5e-20 102.8 62 71.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.4e-19 102.1 70 62.9
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 6.1e-18 96.7 67 65.7
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 6.7e-17 93.2 245 28.2
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.5e-16 92.0 63 69.8
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.5e-16 92.0 63 68.3
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 4.4e-16 90.5 451 24.4
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 9.1e-14 82.8 54 68.5
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 1.3e-12 79.0 432 22.9
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.4e-11 75.5 52 61.5
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.2e-09 67.0 61 50.8
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 3.7e-07 60.8 49 57.1
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.7e-07 60.8 49 57.1
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 3.7e-07 60.8 64 60.9


User provided reference genes

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