Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 8.5e-222 773.5 421 100.0
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.0e-174 615.5 421 77.0
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.4e-171 606.7 417 77.7
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.8e-147 526.6 347 75.5
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 5.3e-147 525.0 348 75.6
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 6.9e-147 524.6 415 65.3
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.2e-146 523.9 355 72.7
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 2.0e-146 523.1 347 73.2
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 2.6e-146 522.7 312 80.4
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 4.5e-146 521.9 347 75.5
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 5.8e-146 521.5 292 84.2
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 7.6e-146 521.2 288 85.4
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 3.8e-145 518.8 334 76.0
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 8.4e-145 517.7 314 79.3
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 8.4e-145 517.7 314 79.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 1.1e-144 517.3 342 74.6
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.4e-144 516.9 340 75.6
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.9e-144 516.5 347 72.9
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 1.9e-144 516.5 288 84.0
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 4.2e-144 515.4 299 81.3
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 5.4e-144 515.0 343 75.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 5.4e-144 515.0 413 65.6
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 7.1e-144 514.6 346 72.8
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 7.1e-144 514.6 286 83.9
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 7.1e-144 514.6 347 72.9
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 9.3e-144 514.2 293 82.6
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.2e-143 513.8 416 65.6
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.6e-143 513.5 288 84.7
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.6e-143 513.5 288 84.7
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 2.1e-143 513.1 348 72.1
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 2.1e-143 513.1 340 74.7
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.7e-143 512.7 288 84.0
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.5e-143 512.3 288 84.4
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 4.6e-143 511.9 292 82.5
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 7.9e-143 511.1 350 72.3
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 7.9e-143 511.1 314 78.7
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.0e-142 510.8 413 64.6
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 1.0e-142 510.8 299 81.6
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 1.0e-142 510.8 288 84.0
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.8e-142 510.0 412 64.8
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 2.3e-142 509.6 410 64.6
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 3.0e-142 509.2 265 91.3
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 3.0e-142 509.2 292 81.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.0e-142 509.2 292 82.9
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 3.9e-142 508.8 348 72.7
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 5.1e-142 508.4 292 82.9
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 6.7e-142 508.1 283 84.1
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 8.7e-142 507.7 284 82.0
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.1e-141 507.3 342 75.1
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.9e-141 506.5 414 65.9
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.5e-141 506.1 312 78.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 4.3e-141 505.4 347 74.1
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 7.4e-141 504.6 310 78.4
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 7.4e-141 504.6 311 77.2
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 7.4e-141 504.6 348 74.4
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 7.4e-141 504.6 348 74.1
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 9.6e-141 504.2 312 77.9
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 9.6e-141 504.2 308 79.2
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 9.6e-141 504.2 320 76.2
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.6e-140 503.4 310 78.1
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.8e-140 501.9 312 77.9
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 1.1e-139 500.7 316 76.9
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.1e-139 500.7 348 71.0
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.4e-139 500.4 314 78.7
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.4e-139 499.6 289 80.6
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.1e-139 499.2 339 72.6
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 6.9e-139 498.0 308 77.6
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 6.9e-139 498.0 348 70.7
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.2e-138 497.3 310 78.1
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.5e-138 496.9 316 78.5
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 3.4e-138 495.7 308 77.3
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.4e-138 495.7 315 75.6
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.8e-138 495.0 301 78.4
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 9.9e-138 494.2 292 79.8
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.7e-137 493.4 375 67.7
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.2e-137 493.0 313 75.1
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.9e-137 492.7 312 76.6
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 6.4e-137 491.5 342 74.6
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.4e-137 491.5 410 64.1
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 8.4e-137 491.1 335 72.2
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.4e-136 490.3 309 77.0
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.4e-136 490.3 292 78.4
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 5.5e-136 488.4 346 71.1
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 7.1e-136 488.0 312 74.0
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.2e-135 487.3 288 79.5
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.1e-135 486.5 410 62.2
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 2.1e-135 486.5 313 75.1
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.7e-135 486.1 322 72.7
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 2.7e-135 486.1 290 79.0
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 6.0e-135 485.0 292 78.1
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 1.3e-134 483.8 290 79.0
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 5.1e-134 481.9 337 71.5
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 6.7e-134 481.5 291 78.7
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 6.7e-134 481.5 291 78.7
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 6.7e-134 481.5 288 78.8
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.3e-133 479.2 322 73.0
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.3e-133 478.8 317 73.8
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.4e-130 469.2 266 81.6
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 2.9e-129 466.1 321 73.2
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 6.5e-129 464.9 316 69.9
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 4.2e-128 462.2 388 62.1
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 2.7e-127 459.5 332 67.2
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.3e-126 457.2 388 61.3
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.1e-125 454.1 411 58.4
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.1e-125 454.1 290 72.8
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.3e-124 450.7 303 71.6
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.1e-123 447.6 275 76.7
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.5e-122 443.7 288 73.3
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.0e-122 443.4 349 64.2
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.2e-119 434.1 294 72.4
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 2.1e-119 433.3 407 57.5
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 8.8e-118 427.9 292 72.9
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.6e-111 406.0 278 66.5
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 4.4e-109 399.1 285 64.9
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.2e-106 391.0 219 84.9
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.5e-106 390.6 436 54.6
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 5.0e-105 385.6 224 82.1
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.9e-104 383.6 272 65.1
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 2.5e-104 383.3 274 64.2
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 3.2e-104 382.9 288 63.5
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 9.7e-93 344.7 183 85.8
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 9.1e-91 338.2 358 53.1
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 3.2e-88 329.7 291 58.4
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.8e-86 323.9 413 49.2
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.9e-73 280.0 155 82.6
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 5.2e-70 269.2 147 82.3
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 2.1e-63 247.3 147 80.3
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 1.2e-50 204.9 177 62.7
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-47 194.5 124 79.8
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.8e-47 193.7 191 54.5
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.5e-40 171.4 131 67.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 7.3e-40 169.1 161 57.8
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.1e-35 155.2 94 70.2
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 7.6e-29 132.5 66 89.4
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.9e-27 127.9 84 70.2
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 5.4e-27 126.3 66 83.3
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.5e-24 117.5 93 62.4
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.1e-22 112.1 72 77.8
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 6.9e-22 109.4 107 54.2
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.9e-20 104.0 65 69.2
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.9e-19 101.3 71 73.2
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.3e-15 88.6 66 60.6
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 6.2e-15 86.3 66 63.6


User provided reference genes

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