Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 2.7e-110 402.1 219 100.0
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 2.6e-65 252.7 210 65.7
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 3.0e-53 212.6 212 58.0
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 1.7e-48 196.8 209 55.0
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.9e-47 193.4 209 55.5
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 3.2e-47 192.6 214 53.7
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 9.4e-47 191.0 212 53.8
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 9.4e-47 191.0 212 52.4
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.7e-46 189.5 212 52.8
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 2.7e-46 189.5 213 54.9
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 3.6e-46 189.1 212 51.9
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.1e-46 188.3 212 52.4
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 6.1e-46 188.3 216 51.4
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 6.1e-46 188.3 212 52.8
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 1.0e-45 187.6 217 53.0
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.0e-45 186.0 212 51.4
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 3.0e-45 186.0 217 52.1
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.0e-45 186.0 216 51.4
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 6.7e-45 184.9 201 54.2
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 6.7e-45 184.9 212 51.9
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 6.7e-45 184.9 219 53.0
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 8.8e-45 184.5 216 50.5
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-44 184.1 216 50.9
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.6e-44 183.0 216 50.5
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.3e-44 182.6 210 52.9
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 2.2e-43 179.9 177 58.8
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 4.8e-43 178.7 202 55.0
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 6.3e-43 178.3 209 52.6
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 6.3e-43 178.3 207 53.6
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.8e-42 176.8 213 47.9
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 2.4e-42 176.4 212 52.4
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 2.4e-42 176.4 216 51.9
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 4.1e-42 175.6 209 50.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 5.3e-42 175.3 212 51.9
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 5.3e-42 175.3 214 50.5
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 9.1e-42 174.5 211 49.8
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 9.1e-42 174.5 213 50.2
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 1.2e-41 174.1 211 48.8
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 2.0e-41 173.3 212 52.4
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 3.4e-41 172.6 216 50.9
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 3.4e-41 172.6 215 49.3
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 4.5e-41 172.2 213 49.3
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 4.5e-41 172.2 217 48.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 5.9e-41 171.8 214 49.5
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 5.9e-41 171.8 214 49.1
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.3e-40 170.6 210 50.0
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.7e-40 170.2 163 60.7
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.7e-40 170.2 214 49.5
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 3.8e-40 169.1 213 48.8
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 6.5e-40 168.3 212 48.6
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 8.5e-40 167.9 221 47.5
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 2.5e-39 166.4 205 46.8
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.5e-39 166.4 216 50.5
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 3.2e-39 166.0 211 50.2
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.2e-39 165.6 204 48.5
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 5.5e-39 165.2 206 50.0
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 7.2e-39 164.9 214 47.2
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 7.2e-39 164.9 222 45.9
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 9.4e-39 164.5 212 48.1
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 1.6e-38 163.7 220 46.4
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 6.1e-38 161.8 218 48.6
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 7.9e-38 161.4 214 46.3
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 2.3e-37 159.8 214 48.1
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 6.7e-37 158.3 198 50.0
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 8.8e-37 157.9 209 47.8
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.6e-36 156.4 218 46.8
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 4.4e-36 155.6 212 46.7
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 7.4e-36 154.8 199 49.2
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 7.4e-36 154.8 209 47.8
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 2.8e-35 152.9 209 46.9
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.7e-35 152.5 210 45.2
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.7e-35 152.5 210 45.2
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 8.2e-35 151.4 215 45.1
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.1e-34 151.0 213 43.7
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 5.3e-34 148.7 203 45.3
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.0e-33 146.7 212 45.3
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 3.5e-33 146.0 210 43.3
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.5e-33 146.0 216 43.1
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 5.9e-33 145.2 219 42.9
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.7e-33 144.8 210 43.8
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.3e-32 144.1 213 44.1
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 1.7e-32 143.7 206 40.3
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.2e-32 143.3 213 44.1
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 3.8e-32 142.5 210 43.3
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 5.0e-32 142.1 212 43.4
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-31 141.0 213 43.7
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.5e-31 140.6 217 41.5
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.5e-31 139.8 212 41.0
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 4.2e-31 139.0 201 45.3
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 5.5e-31 138.7 211 42.7
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 9.4e-31 137.9 211 43.6
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.6e-30 137.1 217 40.1
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 4.7e-30 135.6 214 42.1
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.7e-30 135.6 212 42.0
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.0e-30 134.8 140 53.6
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.8e-29 133.7 203 45.3
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 2.3e-29 133.3 175 48.0
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 3.0e-29 132.9 213 40.8
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 3.0e-29 132.9 212 41.5
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 4.0e-29 132.5 213 41.3
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.0e-28 130.2 218 42.2
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.6e-28 129.8 210 41.9
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 2.6e-28 129.8 220 41.4
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 3.3e-28 129.4 210 40.5
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.4e-28 129.0 215 42.8
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 7.5e-28 128.3 212 40.1
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 9.7e-28 127.9 210 39.5
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 2.2e-27 126.7 215 40.9
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 3.7e-27 125.9 199 40.7
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 4.8e-27 125.6 208 42.8
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 8.2e-27 124.8 210 40.5
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.4e-26 124.0 202 43.6
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.4e-26 124.0 212 38.2
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 3.1e-26 122.9 201 44.3
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 4.1e-26 122.5 208 39.9
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 7.0e-26 121.7 217 38.7
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 9.1e-26 121.3 145 49.0
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 3.5e-25 119.4 214 37.4
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 1.0e-24 117.9 203 41.9
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 1.3e-24 117.5 208 41.8
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 3.8e-24 115.9 142 50.7
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 5.0e-24 115.5 198 40.4
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 5.0e-24 115.5 198 42.9
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 5.0e-24 115.5 198 42.9
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 6.5e-24 115.2 198 42.4
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 6.5e-24 115.2 214 38.3
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.1e-23 114.4 201 40.8
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.5e-23 114.0 188 38.8
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 3.2e-23 112.8 198 41.9
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 7.2e-23 111.7 189 43.4
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 7.2e-23 111.7 213 38.0
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 9.4e-23 111.3 183 37.7
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.2e-22 110.9 213 36.6
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 2.1e-22 110.2 200 40.5
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 2.1e-22 110.2 198 42.4
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 8.0e-22 108.2 205 39.0
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 2.3e-21 106.7 216 34.7
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 8.8e-21 104.8 215 39.1
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.5e-20 104.0 219 36.1
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 1.5e-20 104.0 156 44.2
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 4.4e-20 102.4 140 47.9
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 4.4e-20 102.4 172 39.5
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 7.5e-20 101.7 116 49.1
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.3e-19 100.9 211 36.0
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 2.8e-19 99.8 145 43.4
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 3.7e-19 99.4 210 36.2
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 3.7e-19 99.4 137 46.7
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 6.3e-19 98.6 211 35.5
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.4e-18 97.4 210 37.6
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 8.5e-16 88.2 138 39.9
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 2.0e-12 77.0 119 42.0
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 4.7e-06 55.8 77 42.9


User provided reference genes

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