Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.3e-182 642.1 331 100.0
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 5.4e-147 524.6 345 77.7
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 6.8e-134 481.1 261 89.7
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.1e-131 473.8 349 69.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 9.3e-131 470.7 321 72.6
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.2e-130 470.3 342 69.9
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-130 470.3 315 73.7
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 3.5e-130 468.8 332 72.0
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 3.5e-130 468.8 318 74.2
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.0e-129 467.2 320 72.2
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.0e-129 467.2 321 71.3
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.3e-129 466.8 321 72.6
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.3e-129 466.1 346 69.1
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.3e-129 466.1 346 69.1
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 2.3e-129 466.1 319 71.8
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 3.0e-129 465.7 319 72.7
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 6.6e-129 464.5 336 70.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.1e-128 463.8 328 71.0
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.9e-128 463.0 324 73.1
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.9e-128 463.0 336 69.9
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.5e-128 462.6 304 75.0
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 3.3e-128 462.2 318 73.0
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.3e-128 462.2 328 71.0
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 5.6e-128 461.5 321 72.6
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 2.1e-127 459.5 309 74.1
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 3.6e-127 458.8 313 73.2
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 6.2e-127 458.0 319 73.4
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 8.1e-127 457.6 324 70.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 8.1e-127 457.6 332 69.9
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 4.0e-126 455.3 322 72.7
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 4.0e-126 455.3 320 71.9
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 5.3e-126 454.9 351 67.8
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.5e-125 453.4 342 67.3
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 7.6e-125 451.1 321 69.5
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 7.6e-125 451.1 341 68.3
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 9.9e-125 450.7 304 74.7
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.7e-124 449.9 338 67.5
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 2.2e-124 449.5 345 68.7
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 3.8e-124 448.7 318 70.4
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 8.4e-124 447.6 332 67.5
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.1e-123 447.2 314 72.3
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 4.2e-123 445.3 336 68.8
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 5.4e-123 444.9 302 71.9
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 9.3e-123 444.1 351 64.7
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.6e-122 443.4 321 70.4
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 2.1e-122 443.0 255 82.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 7.9e-122 441.0 320 68.1
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 1.0e-121 440.7 324 67.6
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 2.3e-121 439.5 317 69.7
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 6.6e-121 438.0 321 68.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 8.7e-121 437.6 326 70.2
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.9e-120 436.4 319 69.6
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 2.8e-119 432.6 293 71.7
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 3.6e-119 432.2 319 68.0
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 3.6e-119 432.2 319 68.0
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 3.6e-119 432.2 293 73.4
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 4.8e-119 431.8 373 60.6
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 4.8e-119 431.8 311 69.8
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 6.2e-119 431.4 345 65.8
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.4e-118 430.3 316 69.3
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 3.1e-118 429.1 315 69.5
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 4.0e-118 428.7 289 73.0
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 6.9e-118 427.9 322 67.7
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 6.9e-118 427.9 322 67.7
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 6.9e-118 427.9 340 63.8
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 9.0e-118 427.6 315 69.2
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 9.0e-118 427.6 291 72.9
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 3.4e-117 425.6 340 65.0
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 4.5e-117 425.2 312 68.9
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.2e-116 422.9 258 78.7
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 3.8e-116 422.2 336 66.7
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 8.4e-116 421.0 323 68.1
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 8.4e-116 421.0 266 78.6
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.1e-115 420.6 315 69.5
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.4e-115 420.2 294 69.7
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 2.4e-115 419.5 289 71.6
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 2.7e-114 416.0 349 63.6
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 2.7e-114 416.0 294 69.7
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.8e-113 413.3 320 67.2
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 3.9e-113 412.1 306 68.0
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.1e-112 410.6 301 69.4
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 5.6e-112 408.3 300 70.3
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 7.4e-112 407.9 299 67.9
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 8.1e-111 404.4 317 65.0
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 6.9e-110 401.4 300 68.0
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 2.0e-109 399.8 263 73.0
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 1.7e-108 396.7 348 60.9
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.1e-107 394.0 339 61.9
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 7.9e-106 387.9 229 79.0
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 1.0e-105 387.5 286 69.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 5.0e-100 368.6 321 61.7
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.1e-96 357.5 301 63.8
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 2.2e-95 353.2 288 59.7
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 2.0e-88 330.1 318 57.9
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 3.7e-87 325.9 298 59.7
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 6.1e-82 308.5 255 60.8
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 4.1e-78 295.8 291 50.9
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.2e-77 294.3 164 86.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 8.5e-76 288.1 297 49.8
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.2e-74 284.3 289 49.8
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.8e-71 273.1 173 72.3
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 7.2e-67 258.5 187 64.7
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 9.8e-64 248.1 144 77.8
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 5.9e-61 238.8 224 49.1
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 6.3e-55 218.8 126 84.9
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 6.3e-55 218.8 126 84.9
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.4e-54 216.9 132 81.1
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.6e-53 214.2 190 61.1
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.0e-49 201.4 132 74.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 3.0e-44 183.3 347 35.2
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.2e-39 167.2 250 38.0
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 4.6e-37 159.5 142 66.2
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 2.1e-34 150.6 238 39.5
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 9.8e-32 141.7 107 70.1
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 4.4e-24 116.3 201 39.8
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.9e-23 113.6 83 63.9
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 3.2e-22 110.2 92 59.8
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 1.0e-20 105.1 54 87.0
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 3.8e-15 86.7 55 65.5
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 4.9e-15 86.3 138 45.7
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 5.6e-11 72.8 38 84.2
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 9.6e-11 72.0 129 36.4
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 2.4e-09 67.4 129 35.7
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 5.8e-08 62.8 39 71.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 5.8e-08 62.8 39 71.8
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 1.3e-07 61.6 254 25.6
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 2.2e-07 60.8 256 25.4
CSS0026722 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 3.8e-07 60.1 261 26.1
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 6.4e-07 59.3 254 26.0
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 6.4e-07 59.3 254 24.8
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.4e-06 58.2 34 70.6
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 2.4e-06 57.4 260 21.9
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 3.2e-06 57.0 257 24.9
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 5.4e-06 56.2 297 24.2
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.1e-06 55.8 297 23.9


User provided reference genes

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