Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 2.5e-153 545.4 275 100.0
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.1e-108 397.1 276 74.3
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 7.3e-97 357.8 305 65.6
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.4e-92 341.7 270 65.6
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 1.2e-91 340.5 234 72.2
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.0e-91 338.2 227 73.1
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 6.0e-91 338.2 284 60.6
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 1.0e-90 337.4 244 69.3
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 1.7e-90 336.7 225 71.1
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.9e-90 335.5 221 74.7
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 3.9e-90 335.5 287 61.7
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 5.0e-90 335.1 276 63.0
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.5e-89 333.6 258 65.1
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.9e-89 333.2 258 65.5
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 2.5e-89 332.8 225 72.4
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 2.5e-89 332.8 272 64.3
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 3.6e-88 328.9 278 62.2
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 4.7e-88 328.6 266 62.8
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 4.7e-88 328.6 217 71.4
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 6.2e-88 328.2 222 72.1
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 8.1e-88 327.8 318 57.2
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.3e-87 326.2 250 64.4
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 3.1e-87 325.9 282 62.4
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 3.1e-87 325.9 224 71.9
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 5.2e-87 325.1 230 68.7
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.2e-86 323.9 218 72.0
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.5e-86 323.6 219 73.5
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.6e-86 322.8 224 71.4
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.6e-86 322.8 222 69.8
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.4e-86 322.4 224 71.4
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 4.4e-86 322.0 230 71.7
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 4.4e-86 322.0 227 70.0
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 4.4e-86 322.0 226 69.0
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 5.8e-86 321.6 224 70.1
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 5.8e-86 321.6 241 66.4
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 9.8e-86 320.9 265 63.4
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 9.8e-86 320.9 237 67.5
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 9.8e-86 320.9 219 73.1
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.7e-85 320.1 224 70.5
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 1.7e-85 320.1 253 62.8
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.7e-85 320.1 270 62.2
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.2e-85 319.7 249 64.7
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 6.4e-85 318.2 281 58.4
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.1e-84 317.4 222 68.9
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.4e-84 317.0 231 71.0
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.4e-84 317.0 262 61.5
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 1.9e-84 316.6 280 60.0
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 2.4e-84 316.2 258 62.8
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.4e-84 316.2 224 69.2
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 3.2e-84 315.8 263 62.7
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.2e-84 315.8 233 67.8
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 3.2e-84 315.8 228 68.0
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 4.1e-84 315.5 234 67.1
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 7.1e-84 314.7 221 68.8
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.2e-83 313.9 280 60.7
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.2e-83 313.9 227 67.4
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 1.6e-83 313.5 284 58.8
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 2.1e-83 313.2 281 58.4
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.7e-83 312.8 263 59.7
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.7e-83 312.8 266 60.5
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.7e-83 312.8 230 67.8
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 6.0e-83 311.6 263 59.7
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 6.0e-83 311.6 263 59.7
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 6.0e-83 311.6 223 68.2
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 7.8e-83 311.2 222 66.7
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 7.8e-83 311.2 231 67.5
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.0e-82 310.8 220 67.3
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.0e-82 310.8 220 67.3
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.0e-82 310.8 265 60.4
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.0e-82 310.8 224 67.4
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.3e-82 309.7 224 66.5
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 3.9e-82 308.9 217 68.2
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 6.6e-82 308.1 224 65.6
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 8.6e-82 307.8 226 67.7
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 1.5e-81 307.0 224 66.5
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.9e-81 306.6 228 66.7
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 3.3e-81 305.8 219 65.8
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 4.3e-81 305.4 264 58.7
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 4.3e-81 305.4 279 57.3
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 9.5e-81 304.3 211 71.6
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.2e-80 303.9 272 57.7
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 2.1e-80 303.1 237 64.6
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 1.8e-79 300.1 238 64.7
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.3e-79 299.7 225 67.1
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 3.1e-79 299.3 216 69.0
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 9.9e-78 294.3 281 56.6
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.7e-77 293.5 217 68.2
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.4e-76 289.7 226 64.2
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 3.2e-76 289.3 226 63.7
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 3.2e-76 289.3 225 60.4
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 3.2e-76 289.3 216 66.7
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 5.4e-76 288.5 289 53.6
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.1e-75 286.6 219 63.5
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 6.0e-75 285.0 234 58.5
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.0e-74 284.3 271 54.2
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.0e-74 284.3 195 70.3
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.7e-74 283.5 219 63.0
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.7e-74 283.5 219 63.0
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 2.3e-74 283.1 220 63.2
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.1e-73 280.8 231 59.3
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.9e-73 280.0 201 70.1
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.5e-73 279.6 247 57.1
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 7.3e-73 278.1 228 60.1
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.1e-72 276.6 233 59.7
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 2.8e-72 276.2 252 56.0
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 4.7e-72 275.4 256 55.5
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 6.2e-72 275.0 233 60.5
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.4e-71 273.1 228 59.6
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 5.2e-71 271.9 237 57.0
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.2e-70 270.8 233 59.2
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.5e-70 270.4 223 61.9
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 4.4e-70 268.9 285 51.6
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.2e-69 266.5 236 55.5
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.9e-69 266.2 263 52.9
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 1.7e-61 240.4 213 56.8
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 7.1e-60 235.0 144 77.1
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.3e-60 234.6 237 51.5
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 9.3e-60 234.6 217 54.4
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.2e-59 234.2 276 47.1
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.2e-59 234.2 312 41.7
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.2e-59 234.2 225 52.4
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.6e-59 233.8 219 56.6
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.1e-59 233.4 147 76.2
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 3.5e-59 232.6 171 67.8
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 7.9e-59 231.5 243 50.6
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.1e-57 227.6 268 50.4
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 5.6e-57 225.3 179 60.9
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 5.6e-57 225.3 141 75.2
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 4.8e-56 222.2 219 54.8
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.3e-55 218.8 141 72.3
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.5e-54 217.2 218 53.7
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 2.7e-51 206.5 146 65.1
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 7.9e-51 204.9 143 67.8
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.1e-44 181.8 161 52.8
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 2.7e-43 179.9 222 42.3
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.9e-43 178.3 137 64.2
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 5.7e-41 172.2 171 52.0
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.6e-40 170.6 142 58.5
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 6.3e-40 168.7 169 50.3
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.8e-37 159.5 95 78.9
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 5.3e-31 139.0 129 52.7
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 3.8e-29 132.9 204 38.2
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 4.3e-25 119.4 94 63.8
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 9.1e-23 111.7 120 50.0
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 9.1e-23 111.7 238 32.4
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.3e-21 107.8 72 69.4
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-21 107.8 122 47.5
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 6.5e-21 105.5 233 32.2
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 2.5e-20 103.6 97 54.6
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.5e-13 78.6 88 44.3
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 5.9e-06 55.8 206 25.7


User provided reference genes

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