Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 0.0e+00 1125.5 633 100.0
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 3.5e-163 579.3 441 73.7
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 1.3e-154 550.8 850 45.4
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 2.2e-141 506.9 674 47.5
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 1.1e-140 504.6 714 46.4
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 7.9e-139 498.4 707 47.8
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 2.3e-138 496.9 685 47.3
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 3.9e-138 496.1 774 43.2
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 5.1e-138 495.7 670 48.2
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 2.0e-137 493.8 477 58.3
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 2.0e-137 493.8 767 45.2
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 2.6e-137 493.4 747 46.5
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.3e-136 491.1 485 56.7
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.8e-136 490.0 414 62.1
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 3.7e-136 489.6 476 59.0
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 3.7e-136 489.6 437 61.6
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 3.7e-136 489.6 717 45.7
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 8.2e-136 488.4 736 44.3
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.4e-135 487.6 688 46.4
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 2.4e-135 486.9 496 55.8
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 2.4e-135 486.9 408 64.0
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 3.1e-135 486.5 764 44.2
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 5.3e-135 485.7 478 57.9
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.2e-134 484.6 420 62.1
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 1.2e-134 484.6 473 57.3
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 1.3e-133 481.1 456 60.1
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 2.2e-133 480.3 407 62.2
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 2.9e-133 479.9 580 51.4
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 3.8e-133 479.6 482 56.4
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 8.5e-133 478.4 718 45.3
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 1.1e-132 478.0 813 42.8
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.4e-132 477.6 414 62.3
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 1.4e-132 477.6 531 52.4
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 3.2e-132 476.5 406 61.3
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 9.4e-132 474.9 445 60.9
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.2e-131 474.6 824 40.4
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.6e-131 474.2 474 57.2
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 2.7e-131 473.4 473 56.9
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 6.1e-131 472.2 478 57.7
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 3.0e-130 469.9 508 53.5
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 5.2e-130 469.2 775 42.7
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 3.3e-129 466.5 713 46.3
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 2.8e-128 463.4 877 39.5
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 8.2e-128 461.8 428 59.3
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.8e-127 460.7 427 58.3
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 2.4e-127 460.3 673 51.0
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 9.1e-127 458.4 463 54.6
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.6e-126 457.6 697 44.9
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 7.7e-126 455.3 499 54.1
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 7.7e-126 455.3 486 55.6
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.7e-125 454.1 542 50.0
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.8e-125 453.0 697 45.1
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 3.8e-125 453.0 525 50.5
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 8.5e-125 451.8 470 56.2
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 1.5e-124 451.1 411 58.9
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 1.9e-124 450.7 765 42.0
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 4.2e-124 449.5 417 58.3
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 4.2e-124 449.5 508 52.6
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 5.5e-124 449.1 471 55.6
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 9.4e-124 448.4 547 51.2
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.1e-123 447.2 747 42.4
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 2.7e-123 446.8 762 39.9
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 2.7e-123 446.8 679 43.6
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 3.6e-123 446.4 424 59.2
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 2.3e-122 443.7 480 54.6
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 1.1e-121 441.4 456 55.3
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 2.0e-121 440.7 700 43.1
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 2.6e-121 440.3 664 42.9
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 4.4e-121 439.5 433 59.1
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 7.5e-121 438.7 657 44.4
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 1.3e-120 438.0 413 55.9
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 1.3e-120 438.0 494 51.6
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 1.1e-119 434.9 655 43.7
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 1.1e-119 434.9 675 43.3
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 1.4e-119 434.5 564 47.5
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 7.0e-119 432.2 403 58.3
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 1.6e-118 431.0 651 43.5
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 1.6e-118 431.0 490 51.2
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 2.0e-118 430.6 642 43.1
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 1.7e-117 427.6 673 44.0
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 2.5e-116 423.7 689 42.8
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 5.5e-116 422.5 865 37.9
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 1.6e-115 421.0 749 41.8
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 2.7e-115 420.2 525 48.8
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 2.3e-114 417.2 644 42.9
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 3.4e-113 413.3 641 42.7
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 2.2e-112 410.6 652 42.6
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 4.8e-112 409.5 653 42.7
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 8.3e-112 408.7 387 58.1
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 1.8e-111 407.5 419 54.7
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 5.9e-110 402.5 648 43.4
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 1.0e-109 401.7 408 57.6
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 6.5e-109 399.1 666 41.6
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.5e-108 397.1 718 41.5
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 1.4e-106 391.3 680 40.9
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 5.2e-106 389.4 462 49.8
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 8.3e-104 382.1 701 39.7
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 4.7e-99 366.3 515 46.0
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 4.1e-95 353.2 258 68.2
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.0e-94 350.9 285 64.2
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 5.6e-92 342.8 284 65.1
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 1.2e-78 298.5 767 33.4
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 5.6e-76 289.7 479 42.8
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 6.4e-64 249.6 215 63.3
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 1.4e-55 221.9 294 48.3
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 1.0e-40 172.6 126 69.8
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 6.7e-37 159.8 200 40.5
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.1e-36 159.1 186 51.1
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 5.5e-31 140.2 114 65.8
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.4e-26 125.6 84 69.0
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 1.7e-19 102.1 91 59.3
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 1.1e-18 99.4 84 64.3
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 5.3e-18 97.1 83 65.1
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 5.9e-09 67.0 146 39.7


User provided reference genes

Program Settings