Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 5.2e-301 1036.9 532 100.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.1e-193 679.5 521 68.3
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.8e-151 538.5 421 66.7
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.7e-132 476.5 545 50.8
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.9e-124 448.4 546 49.5
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.1e-120 436.0 537 48.6
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.2e-117 425.2 536 47.0
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.6e-116 424.1 546 47.4
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.6e-116 424.1 546 47.4
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.1e-115 419.1 543 47.1
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.0e-111 407.1 535 44.3
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 2.0e-111 407.1 530 44.7
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 7.7e-111 405.2 522 45.8
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.0e-103 380.6 521 43.2
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.9e-102 376.7 534 42.7
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.0e-102 375.9 534 44.4
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.1e-100 370.5 527 42.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.0e-99 366.7 525 42.7
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 5.7e-98 362.5 440 45.9
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.3e-97 361.3 522 42.3
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 6.3e-97 359.0 537 42.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 4.1e-96 356.3 526 41.1
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 7.0e-96 355.5 540 40.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.3e-94 351.3 529 41.2
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.7e-94 350.9 516 41.5
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 5.5e-93 345.9 527 39.7
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.7e-92 343.6 531 42.0
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.1e-92 342.4 542 39.1
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.0e-91 341.7 530 40.6
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 2.0e-90 337.4 549 40.6
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 5.7e-90 335.9 550 40.5
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.7e-89 333.2 532 38.9
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-88 331.6 518 39.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.4e-88 331.3 535 39.4
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.4e-88 330.5 551 40.3
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.9e-87 325.9 457 42.0
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.0e-86 325.1 474 40.9
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.3e-86 324.7 473 41.4
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.7e-86 324.3 539 39.0
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.9e-85 320.9 535 37.9
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.9e-85 320.9 525 39.4
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.5e-85 320.5 520 39.4
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 3.2e-85 320.1 531 38.4
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 3.2e-85 320.1 532 38.2
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.6e-84 317.8 477 41.7
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.7e-84 317.0 538 36.4
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.4e-82 310.1 565 37.2
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 3.4e-82 310.1 474 39.7
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.7e-82 309.3 468 39.5
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.7e-81 307.8 536 37.5
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.8e-81 307.0 498 38.4
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.8e-80 304.3 515 39.2
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 7.7e-79 298.9 521 37.2
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.7e-78 297.7 535 36.6
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-78 297.4 524 36.8
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 5.0e-78 296.2 518 39.0
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.2e-76 291.6 516 35.9
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.5e-74 284.6 540 36.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.8e-74 282.0 482 36.9
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.4e-72 276.2 473 37.8
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.5e-69 268.1 485 35.9
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.2e-68 265.0 540 34.6
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.0e-67 261.9 494 35.2
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.4e-66 256.9 492 36.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 7.5e-66 255.8 537 33.5
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 7.5e-66 255.8 523 35.8
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 7.0e-64 249.2 514 35.6
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 9.2e-64 248.8 526 36.7
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 9.2e-64 248.8 525 32.0
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.2e-63 248.4 476 35.7
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.3e-62 244.2 483 35.6
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 3.9e-62 243.4 480 32.5
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.6e-62 242.7 537 34.3
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 4.3e-61 240.0 517 33.5
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.3e-61 239.2 498 33.7
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.5e-61 238.8 485 34.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 9.5e-61 238.8 293 49.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-60 238.4 488 35.5
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.8e-60 237.3 541 33.3
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.2e-60 236.1 517 34.2
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.1e-59 235.3 520 34.4
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.4e-59 235.0 529 35.3
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.3e-59 234.2 517 34.4
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.2e-59 233.0 486 34.0
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 8.9e-59 232.3 518 33.6
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-57 228.4 264 45.1
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 4.9e-57 226.5 529 32.9
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 6.4e-57 226.1 375 35.2
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.9e-56 224.6 480 31.9
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.4e-56 224.2 526 32.5
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.5e-55 220.3 504 32.9
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 8.6e-54 215.7 374 36.4
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.8e-52 210.7 543 31.3
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 2.8e-52 210.7 417 32.1
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.1e-52 209.1 373 36.7
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.1e-51 208.8 541 32.0
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 3.1e-51 207.2 498 32.3
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 8.9e-51 205.7 412 35.0
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-50 204.1 291 40.5
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.6e-50 204.1 542 30.1
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 4.4e-50 203.4 508 29.5
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 7.6e-50 202.6 278 41.7
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 7.6e-50 202.6 485 32.2
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.3e-49 201.8 525 32.4
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-49 201.1 268 42.5
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.9e-49 200.7 260 50.0
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.9e-49 200.7 495 30.5
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.9e-49 200.7 405 31.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 4.9e-49 199.9 485 30.1
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.9e-48 198.0 474 30.6
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 5.4e-48 196.4 513 30.2
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.1e-48 196.1 508 31.3
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 9.2e-48 195.7 266 45.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.2e-47 195.3 385 34.3
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.6e-47 194.9 522 30.5
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 2.1e-47 194.5 422 33.4
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 2.7e-47 194.1 385 34.3
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.5e-47 193.7 499 30.5
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 3.5e-47 193.7 499 30.5
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 3.5e-47 193.7 502 31.9
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 6.0e-47 193.0 555 32.4
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 3.0e-46 190.7 406 32.3
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 3.9e-46 190.3 491 29.9
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 6.6e-46 189.5 274 42.3
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.5e-45 188.3 235 43.0
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.3e-45 187.2 388 32.7
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 7.3e-45 186.0 392 30.1
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 7.3e-45 186.0 537 30.7
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.2e-44 185.3 402 30.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 3.1e-43 180.6 263 38.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.5e-42 178.3 527 30.7
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.7e-41 174.9 431 31.8
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.7e-41 174.9 460 29.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.7e-41 174.9 497 28.8
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.2e-39 168.7 553 26.2
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 4.6e-39 166.8 517 28.0
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.0e-38 165.6 536 26.5
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.3e-38 164.5 476 27.5
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 8.7e-38 162.5 505 28.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.1e-37 162.2 516 27.9
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.6e-36 158.3 476 27.5
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.8e-36 156.8 477 27.7
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.8e-35 154.8 255 40.0
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 5.3e-35 153.3 570 26.0
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 9.0e-35 152.5 531 27.7
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 2.6e-34 151.0 479 30.1
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.4e-34 150.6 306 34.6
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 2.9e-33 147.5 481 29.3
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 2.9e-33 147.5 485 29.9
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.8e-33 147.1 271 38.7
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.9e-32 144.8 483 29.4
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 9.3e-32 142.5 480 28.5
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.6e-31 141.7 269 34.2
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.5e-29 135.2 261 35.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.3e-28 132.1 280 34.3
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 9.3e-24 115.9 250 30.8
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.7e-23 114.4 289 32.2
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.7e-23 114.4 167 38.9
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.8e-22 111.7 609 25.8
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 3.0e-22 110.9 245 32.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 5.1e-22 110.2 129 48.1
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 8.7e-22 109.4 167 38.3
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 4.8e-20 103.6 290 28.3
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.8e-20 103.6 160 36.2
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.1e-19 102.4 272 30.9
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.4e-19 102.1 252 30.2
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 4.0e-19 100.5 270 33.3
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 2.9e-17 94.4 118 44.9
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 8.4e-17 92.8 148 35.8
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 3.0e-14 84.3 525 25.3
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.7e-12 77.4 199 31.7
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 7.6e-10 69.7 286 29.4
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.2e-09 68.2 238 26.9


User provided reference genes

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