Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1516.5 793 100.0
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1317.4 798 85.6
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 0.0e+00 1246.1 791 82.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1186.0 802 77.2
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1153.3 808 75.5
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1143.6 793 75.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1132.1 798 74.1
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1130.5 794 74.3
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1127.9 837 72.0
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1125.2 793 73.3
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 780 75.3
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1124.0 790 73.3
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1116.3 789 73.5
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1106.7 791 74.0
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1106.3 789 73.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1105.9 816 71.8
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1105.5 816 72.3
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1102.8 794 71.9
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1102.4 807 72.7
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1100.1 797 72.6
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1096.6 801 71.7
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1096.3 798 72.1
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 791 71.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1093.2 793 71.9
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1088.6 789 71.5
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1088.6 790 71.6
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1087.4 801 71.2
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 864 68.1
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1081.2 790 71.8
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1081.2 795 71.2
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 791 71.4
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 791 71.3
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1075.5 790 71.1
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 794 71.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 795 71.2
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 6.5e-311 1070.5 792 70.6
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 1.1e-310 1069.7 797 71.0
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 1.1e-310 1069.7 794 71.3
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 7.0e-310 1067.0 792 71.7
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 7.0e-310 1067.0 798 70.4
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 7.0e-310 1067.0 792 70.6
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 9.1e-310 1066.6 797 70.1
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 9.1e-310 1066.6 791 70.3
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.6e-309 1065.8 792 71.6
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 3.5e-309 1064.7 799 69.6
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.0e-308 1063.1 818 69.2
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 791 71.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 2.9e-308 1061.6 791 71.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 5.0e-308 1060.8 792 70.6
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 6.6e-308 1060.4 793 70.2
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 6.6e-308 1060.4 798 69.8
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 1.5e-307 1059.3 792 69.9
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 789 69.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 793 70.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 793 68.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 2.5e-307 1058.5 803 70.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 3.3e-307 1058.1 795 68.8
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 806 69.6
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 2.8e-306 1055.0 794 69.1
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 6.1e-306 1053.9 789 69.7
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 6.1e-306 1053.9 786 69.5
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 8.0e-306 1053.5 787 69.3
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 778 69.7
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 1.8e-305 1052.4 794 69.5
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.3e-305 1052.0 805 69.9
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 2.0e-304 1048.9 839 67.6
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 7.5e-304 1047.0 794 70.4
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 9.8e-304 1046.6 750 72.1
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 2.8e-303 1045.0 681 79.3
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 4.9e-303 1044.3 802 68.3
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.7e-301 1038.5 805 69.2
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 7.8e-301 1036.9 778 69.4
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 1.0e-300 1036.6 788 69.7
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.7e-300 1035.8 778 69.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 3.8e-300 1034.6 797 67.9
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.9e-299 1032.3 802 68.2
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.3e-299 1031.6 794 68.1
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 5.6e-299 1030.8 798 67.8
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 5.6e-299 1030.8 798 68.0
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 2.6e-296 1021.9 802 68.1
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 3.4e-296 1021.5 794 67.4
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.3e-295 1019.6 778 68.3
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.3e-295 1019.6 778 68.3
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 3.7e-295 1018.1 892 63.8
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-294 1016.5 778 68.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.9e-294 1015.8 778 68.4
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.9e-294 1015.8 778 68.4
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.6e-293 1012.7 779 68.3
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.6e-290 1002.7 757 69.9
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.2e-287 992.3 780 66.9
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 7.0e-286 987.3 647 77.9
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 7.0e-286 987.3 788 66.5
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.7e-285 985.3 796 65.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.3e-283 977.2 794 65.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 2.1e-282 975.7 647 77.6
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.2e-281 971.1 647 77.3
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.4e-280 968.4 797 65.9
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 5.8e-280 967.6 821 64.3
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.8e-274 948.7 794 64.9
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 3.4e-272 941.8 776 64.8
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.1e-270 936.8 780 64.7
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.4e-270 935.6 778 64.4
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.3e-268 929.1 834 60.2
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 3.6e-266 921.8 778 64.3
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.3e-263 913.3 807 60.1
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 7.1e-262 907.5 779 62.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 8.4e-255 884.0 777 62.4
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.2e-254 882.1 780 62.8
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 4.0e-249 865.1 804 57.6
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.9e-247 859.0 710 66.9
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.0e-241 838.6 793 56.4
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-220 768.8 638 64.6
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.4e-214 750.4 621 67.5
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.0e-212 744.2 637 62.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.8e-201 706.8 793 49.4
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.7e-194 683.7 480 74.2
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.5e-184 649.4 840 45.7
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.5e-184 649.4 840 45.7
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.6e-181 640.6 867 44.6
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 6.4e-170 602.1 459 66.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.1e-169 599.4 839 43.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 3.1e-164 583.2 823 43.9
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.8e-163 578.9 655 49.3
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 5.4e-161 572.4 587 52.8
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.0e-159 568.2 434 66.6
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.0e-159 566.6 532 59.6
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 2.3e-127 460.7 395 62.5
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.8e-103 381.3 608 43.8
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-102 377.1 617 41.8
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.2e-81 307.4 213 75.6
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.5e-78 298.5 765 31.1
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 7.0e-76 289.7 207 71.5
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.7e-75 287.7 305 54.4
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 4.3e-73 280.4 197 72.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 7.3e-73 279.6 197 72.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 7.3e-73 279.6 197 72.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 8.6e-66 256.1 211 64.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.0e-59 235.0 236 54.2
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.1e-55 221.1 557 33.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-53 215.7 471 36.5
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 4.0e-47 194.1 131 76.3
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 4.0e-47 194.1 121 73.6
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.4e-39 169.1 151 60.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.2e-38 166.0 92 80.4
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.4e-37 159.8 87 80.5
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.4e-37 159.8 87 80.5
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-35 155.2 198 49.5
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.0e-31 139.8 352 30.7
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.9e-29 134.0 121 59.5
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 9.3e-28 129.8 142 50.0
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 6.2e-24 117.1 89 59.6
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-23 115.5 75 81.3
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 3.2e-20 104.8 71 67.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 9.3e-20 103.2 71 67.6
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-19 102.1 146 41.1
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.9e-18 97.8 154 40.3
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 5.1e-18 97.4 57 87.7
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.8e-16 90.9 108 47.2
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.5e-14 85.9 85 54.1
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 5.8e-14 84.0 59 64.4
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 2.2e-13 82.0 105 49.5
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 5.5e-12 77.4 148 34.5
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.8e-10 72.4 52 80.8
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 3.0e-10 71.6 76 50.0
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.0e-10 71.6 77 53.2
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.3e-08 66.2 52 75.0
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.8e-08 64.3 51 72.5
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.1e-07 63.2 76 52.6
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 3.1e-07 61.6 65 60.0
Lsat_1_v5_gn_6_82700 Lactuca sativa HOM05D003991 ORTHO05D232831 1.2e-06 59.7 51 60.8


User provided reference genes

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