Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 6.6e-90 334.0 162 100.0
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 7.6e-54 214.2 171 63.7
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.1e-44 183.7 158 62.0
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.1e-35 152.9 165 52.1
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.1e-33 147.1 164 48.8
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 7.4e-33 144.4 161 49.1
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 3.1e-31 139.0 163 46.6
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 7.0e-31 137.9 161 50.3
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-30 137.1 161 48.4
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.0e-30 136.3 161 47.8
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 7.7e-30 134.4 166 45.8
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 7.7e-30 134.4 166 45.8
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 7.7e-30 134.4 165 43.0
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 7.7e-30 134.4 159 49.1
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.2e-29 132.9 150 45.3
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.9e-29 132.5 166 47.0
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 8.5e-29 131.0 165 43.6
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 8.5e-29 131.0 166 44.6
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.1e-28 130.6 167 45.5
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.1e-28 130.6 162 43.8
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.5e-28 130.2 165 43.0
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.9e-28 129.8 164 43.3
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 4.2e-28 128.6 164 44.5
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.2e-28 128.6 163 44.2
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 7.2e-28 127.9 160 41.9
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 9.4e-28 127.5 168 43.5
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.2e-27 127.1 158 44.9
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.2e-27 127.1 169 42.6
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.6e-27 126.7 160 46.2
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 2.1e-27 126.3 161 42.2
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.7e-27 125.9 161 45.3
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.7e-27 125.9 164 43.9
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 4.7e-27 125.2 172 41.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.7e-27 125.2 162 42.6
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 4.7e-27 125.2 159 44.7
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.1e-27 124.8 159 42.8
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 6.1e-27 124.8 162 42.6
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 6.1e-27 124.8 164 43.3
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 6.1e-27 124.8 158 48.1
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 8.0e-27 124.4 119 53.8
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.0e-26 124.0 158 43.7
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 1.0e-26 124.0 162 42.6
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.0e-26 124.0 164 43.9
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.4e-26 123.6 157 42.7
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.4e-26 123.6 172 45.3
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.8e-26 123.2 162 42.6
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.8e-26 123.2 159 43.4
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 2.3e-26 122.9 165 42.4
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.0e-26 122.5 163 44.2
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 3.0e-26 122.5 162 45.1
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 3.0e-26 122.5 159 47.8
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 4.0e-26 122.1 157 42.0
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 4.0e-26 122.1 157 42.0
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.0e-26 122.1 158 43.7
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 4.0e-26 122.1 161 42.9
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 5.2e-26 121.7 159 42.8
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.2e-26 121.7 162 42.6
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 8.8e-26 120.9 198 37.9
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.5e-25 120.2 159 42.8
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.0e-25 119.8 110 55.5
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.3e-25 119.0 171 45.0
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 3.3e-25 119.0 166 40.4
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 3.3e-25 119.0 164 40.2
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.3e-25 119.0 158 43.0
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 3.3e-25 119.0 169 40.2
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 5.7e-25 118.2 164 38.4
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.7e-25 118.2 163 42.9
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 7.5e-25 117.9 157 40.8
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 7.5e-25 117.9 164 41.5
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.3e-24 117.1 158 41.1
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.3e-24 117.1 159 42.1
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-24 116.7 157 40.8
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.2e-24 116.3 157 42.0
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.2e-24 116.3 161 41.6
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.8e-24 115.9 148 45.3
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.8e-24 115.9 163 42.3
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.7e-24 115.5 166 44.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 3.7e-24 115.5 161 39.1
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 3.7e-24 115.5 157 39.5
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 4.8e-24 115.2 163 41.7
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 6.3e-24 114.8 160 42.5
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 8.2e-24 114.4 161 39.1
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 8.2e-24 114.4 160 44.4
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.1e-23 114.0 163 43.6
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.1e-23 114.0 163 42.3
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.4e-23 113.6 160 38.8
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.8e-23 113.2 162 41.4
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.8e-23 113.2 159 40.9
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.8e-23 113.2 167 40.1
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 3.1e-23 112.5 159 42.1
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 4.1e-23 112.1 161 40.4
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 4.1e-23 112.1 161 40.4
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.2e-22 110.5 161 40.4
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.6e-22 110.2 158 43.0
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 2.7e-22 109.4 192 37.5
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 4.5e-22 108.6 167 39.5
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 7.7e-22 107.8 156 40.4
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.7e-21 106.7 160 40.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.7e-21 106.7 193 37.3
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.7e-21 106.7 204 36.8
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 5.0e-21 105.1 162 37.7
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 6.5e-21 104.8 155 38.7
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 6.5e-21 104.8 155 38.7
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.9e-20 103.2 161 39.1
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 3.2e-20 102.4 111 49.5
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 3.2e-20 102.4 153 41.8
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 9.4e-20 100.9 158 39.9
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.2e-19 100.5 153 40.5
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.1e-19 99.8 159 44.7
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.1e-19 99.8 161 36.6
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.1e-19 99.8 161 40.4
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 2.7e-19 99.4 143 43.4
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.7e-19 98.6 158 38.6
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 8.0e-19 97.8 156 37.8
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 8.0e-19 97.8 155 39.4
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.0e-18 97.4 156 37.2
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.0e-18 97.4 156 37.2
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 1.4e-18 97.1 162 38.3
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 2.3e-18 96.3 156 39.1
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.3e-18 96.3 136 41.9
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 3.0e-18 95.9 153 39.9
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 3.0e-18 95.9 153 39.9
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.0e-18 95.9 155 38.1
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 3.0e-18 95.9 159 37.1
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 5.2e-18 95.1 148 37.2
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 6.8e-18 94.7 149 38.3
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 6.8e-18 94.7 155 38.1
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 6.8e-18 94.7 155 38.1
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 6.8e-18 94.7 163 35.6
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.2e-17 94.0 227 30.4
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.5e-17 93.6 148 37.8
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 2.0e-17 93.2 267 28.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 2.6e-17 92.8 165 34.5
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.7e-16 90.1 157 38.2
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.2e-16 89.7 168 34.5
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.8e-16 88.6 99 50.5
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.1e-15 87.4 110 45.5
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-15 86.7 173 32.9
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.1e-15 85.5 223 29.6
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 9.1e-15 84.3 244 27.9
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.9e-12 76.6 101 42.6
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 3.2e-12 75.9 100 44.0
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 7.2e-12 74.7 75 46.7
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 7.2e-12 74.7 78 46.2
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.0e-10 68.9 140 35.0
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 5.2e-10 68.6 80 41.2
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.6e-09 66.2 88 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 4.4e-09 65.5 100 41.0
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 7.5e-09 64.7 71 40.8
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 9.8e-09 64.3 95 40.0
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.9e-08 62.0 71 45.1
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 2.4e-07 59.7 99 37.4
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 1.6e-06 57.0 88 39.8
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.7e-06 56.2 80 42.5
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.7e-06 56.2 79 36.7
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 7.7e-06 54.7 87 39.1


User provided reference genes

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