Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 0.0e+00 1382.9 718 100.0
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.2e-289 999.6 668 77.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 4.0e-288 994.6 679 76.7
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 9.0e-232 807.4 720 60.6
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 8.5e-230 800.8 718 60.0
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.6e-228 795.0 712 60.7
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 6.7e-227 791.2 712 60.5
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.6e-226 789.3 709 61.6
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.8e-217 759.2 715 56.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.6e-212 742.3 718 56.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.0e-211 740.7 705 57.9
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.2e-210 737.3 721 55.6
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 3.3e-210 735.7 733 56.8
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 4.4e-210 735.3 710 56.3
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 9.7e-210 734.2 695 59.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 1.3e-209 733.8 730 56.7
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.7e-209 732.3 721 54.9
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.1e-208 730.7 718 56.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 7.0e-208 728.0 718 55.7
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.7e-207 726.1 693 58.2
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 5.9e-207 724.9 673 58.4
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.7e-206 723.4 687 56.2
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 2.9e-206 722.6 725 55.9
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.1e-205 720.7 692 56.2
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 1.9e-205 719.9 724 54.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 9.4e-205 717.6 713 55.1
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 9.4e-205 717.6 725 54.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.7e-204 716.1 722 54.6
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.8e-203 713.4 714 56.0
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.2e-203 711.8 725 53.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.6e-202 709.5 691 56.7
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.6e-202 709.5 693 56.4
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 4.4e-202 708.8 715 54.4
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 2.2e-201 706.4 685 55.0
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 2.8e-201 706.1 684 56.0
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.4e-200 703.7 707 54.7
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 3.1e-200 702.6 693 55.6
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 9.1e-200 701.0 723 55.6
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 4.5e-199 698.7 702 54.1
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.7e-199 698.0 725 53.8
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.3e-198 697.2 694 55.0
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.7e-198 696.8 695 54.7
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 6.5e-198 694.9 715 53.1
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.5e-198 694.5 716 54.1
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.1e-197 694.1 725 53.7
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.5e-197 693.0 691 56.0
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.2e-196 690.6 722 54.2
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 6.1e-196 688.3 715 53.3
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 6.1e-196 688.3 714 53.4
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 4.0e-195 685.6 700 53.9
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 2.6e-194 682.9 715 54.0
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 3.1e-192 676.0 729 50.9
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 5.4e-192 675.2 711 52.7
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 7.0e-192 674.9 712 52.2
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 2.0e-191 673.3 712 52.8
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.0e-191 673.3 700 52.4
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.7e-191 672.9 717 51.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.5e-191 672.2 715 52.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.0e-190 671.0 712 51.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.5e-189 667.2 723 52.7
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.5e-189 667.2 724 52.3
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 7.3e-189 664.8 775 51.0
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 9.5e-189 664.5 706 52.5
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.6e-188 663.7 673 55.0
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.0e-187 661.0 692 51.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.8e-187 660.2 704 52.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 5.2e-187 658.7 709 52.0
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.0e-186 656.8 722 52.2
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.4e-186 656.0 706 51.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.4e-186 656.0 707 51.8
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 4.4e-186 655.6 750 48.8
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.3e-185 654.1 715 52.2
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.3e-185 651.4 698 51.9
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.4e-184 650.6 691 51.7
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.4e-184 649.8 725 51.3
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.6e-183 647.1 690 51.4
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.6e-183 647.1 690 51.9
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.3e-182 644.0 582 59.5
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.5e-181 639.8 698 51.3
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.8e-180 636.3 740 48.8
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.3e-179 633.3 668 52.1
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 5.2e-179 632.1 738 48.9
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.4e-178 629.4 667 50.8
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 5.8e-178 628.6 794 48.6
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.7e-177 625.9 602 54.7
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.9e-176 623.6 720 48.9
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.1e-171 606.3 691 48.0
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 3.4e-170 602.8 607 55.7
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.7e-169 600.5 729 47.5
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.1e-168 597.8 734 47.3
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.4e-168 597.4 670 50.1
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 3.0e-166 589.7 719 47.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 5.1e-166 589.0 728 46.4
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.6e-166 588.2 670 48.7
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 3.3e-165 586.3 697 47.3
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 4.3e-165 585.9 730 46.4
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 4.3e-165 585.9 716 46.9
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 9.5e-165 584.7 720 45.8
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.1e-164 583.6 730 46.8
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.8e-164 583.2 633 50.7
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.7e-164 582.4 716 47.6
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.4e-163 580.9 719 46.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 4.0e-163 579.3 730 46.6
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.5e-162 577.4 716 47.3
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.6e-162 576.6 716 47.2
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.1e-160 571.2 633 51.0
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 6.6e-158 562.0 616 51.6
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 7.3e-157 558.5 765 44.4
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.2e-154 551.2 631 49.6
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.8e-148 530.0 770 43.8
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 5.4e-144 515.8 621 47.2
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.3e-141 506.1 664 45.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.2e-135 488.0 660 43.9
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.1e-128 464.9 513 52.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.2e-128 463.4 517 48.9
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.8e-126 457.6 721 39.5
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 8.2e-124 448.7 819 37.6
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 9.0e-123 445.3 754 40.7
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 4.5e-122 443.0 753 39.3
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.9e-120 437.6 687 41.3
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 7.7e-98 362.5 508 42.7
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.6e-93 347.4 507 41.2
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.4e-86 325.1 745 33.4
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.4e-75 286.6 461 37.7
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.1e-67 262.3 424 40.8
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.6e-61 241.1 655 28.4
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.5e-50 204.1 235 46.4
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.6e-45 188.0 218 50.5
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.9e-41 174.1 206 47.1
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.9e-40 171.8 280 37.1
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.8e-37 160.2 157 56.1
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.9e-35 155.2 104 73.1
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 5.4e-35 153.7 128 64.8
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 7.3e-32 143.3 93 66.7
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.0e-30 137.5 95 67.4
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.7e-26 124.8 112 58.9
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 5.6e-24 117.1 148 47.3
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 7.4e-24 116.7 130 50.0
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 2.8e-15 88.2 242 35.1
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 8.2e-15 86.7 83 50.6
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 4.0e-14 84.3 74 54.1
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 6.7e-09 67.0 176 31.2
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 9.7e-08 63.2 160 28.8
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 2.4e-06 58.5 165 27.3
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 4.1e-06 57.8 204 30.9
MCO11G475 Micromonas commoda HOM05D028850 ORTHO05D006451 5.3e-06 57.4 99 38.4
Manes.11G155800 Manihot esculenta HOM05D001312 ORTHO05D001832 6.9e-06 57.0 159 30.8
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 6.9e-06 57.0 169 24.9
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 9.0e-06 56.6 425 23.1
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 9.0e-06 56.6 61 47.5


User provided reference genes

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