Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0043011 Helianthus annuus HOM05D001115 ORTHO05D001023 5.4e-33 143.7 69 100.0
HanXRQChr06g0167291 Helianthus annuus HOM05D001115 ORTHO05D001023 2.9e-26 121.3 61 91.8
HanXRQChr03g0085741 Helianthus annuus HOM05D001115 ORTHO05D001023 5.1e-23 110.5 61 88.5
Lsat_1_v5_gn_3_16380 Lactuca sativa HOM05D001115 ORTHO05D001023 2.8e-21 104.8 61 83.6
ECA246G5071 Erigeron canadensis HOM05D001115 ORTHO05D001023 4.7e-21 104.0 61 82.0
ECA240G2500 Erigeron canadensis HOM05D001115 ORTHO05D001023 3.1e-20 101.3 61 80.3
HanXRQChr13g0416631 Helianthus annuus HOM05D001115 ORTHO05D001023 2.6e-19 98.2 61 80.3
Lsat_1_v5_gn_6_88321 Lactuca sativa HOM05D001115 ORTHO05D001023 9.9e-19 96.3 61 77.0
DCAR_024976 Daucus carota HOM05D001115 ORTHO05D001023 2.4e-17 91.7 62 74.2
unitig_21.g20541 Utricularia gibba HOM05D001115 ORTHO05D001023 4.2e-17 90.9 62 72.6
Dinv25188 Davidia involucrata HOM05D001115 ORTHO05D001023 2.7e-16 88.2 62 71.0
Actinidia03391 Actinidia chinensis HOM05D001115 ORTHO05D001023 3.5e-16 87.8 62 72.6
Cc08_g02110 Coffea canephora HOM05D001115 ORTHO05D001023 6.0e-16 87.0 63 73.0
Gohir.D09G192700 Gossypium hirsutum HOM05D001115 ORTHO05D001023 6.0e-16 87.0 62 74.2
unitig_744.g24313 Utricularia gibba HOM05D001115 ORTHO05D001023 6.0e-16 87.0 62 69.4
Actinidia25947 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.0e-15 86.3 62 71.0
SGA_v2.0_scaffold6G03190 Striga asiatica HOM05D001115 ORTHO05D001023 1.0e-15 86.3 62 69.4
Actinidia10883 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.3e-15 85.9 62 71.0
CSS0017524 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 1.3e-15 85.9 62 69.4
CSS0027921 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 1.3e-15 85.9 62 69.4
Sc07g0008840 Simmondsia chinensis HOM05D001115 ORTHO05D001023 1.7e-15 85.5 61 67.2
Lalb_Chr05g0214061 Lupinus albus HOM05D001115 ORTHO05D001023 3.0e-15 84.7 61 65.6
Rhsim11G0011600 Rhododendron simsii HOM05D001115 ORTHO05D001023 3.0e-15 84.7 62 67.7
CSS0043217 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 3.9e-15 84.3 63 71.4
CAN.G799.10 Capsicum annuum HOM05D001115 ORTHO05D001023 3.9e-15 84.3 64 68.8
SGA_v2.0_scaffold20G09234 Striga asiatica HOM05D001115 ORTHO05D001023 3.9e-15 84.3 63 69.8
MELO3C003376.2 Cucumis melo HOM05D001115 ORTHO05D001023 6.6e-15 83.6 62 71.0
Gorai.006G215600 Gossypium raimondii HOM05D001115 ORTHO05D001023 6.6e-15 83.6 62 74.2
PGR042G3462 Punica granatum HOM05D001115 ORTHO05D001023 6.6e-15 83.6 61 68.9
Dinv28921 Davidia involucrata HOM05D001115 ORTHO05D001023 8.7e-15 83.2 62 66.1
Duzib068G1085 Durio zibethinus HOM05D001115 ORTHO05D001023 8.7e-15 83.2 62 71.0
Nitab4.5_0002055g0160 Nicotiana tabacum HOM05D001115 ORTHO05D001023 8.7e-15 83.2 63 69.8
Nitab4.5_0005381g0020 Nicotiana tabacum HOM05D001115 ORTHO05D001023 8.7e-15 83.2 63 69.8
BcaC05g27862 Brassica carinata HOM05D001115 ORTHO05D001023 1.1e-14 82.8 61 65.6
A05p24880 Brassica napus HOM05D001115 ORTHO05D001023 1.1e-14 82.8 61 65.6
C05p38580 Brassica napus HOM05D001115 ORTHO05D001023 1.1e-14 82.8 61 65.6
BolC5t32596H Brassica oleracea HOM05D001115 ORTHO05D001023 1.1e-14 82.8 61 65.6
BraA05t21375Z Brassica rapa HOM05D001115 ORTHO05D001023 1.1e-14 82.8 61 65.6
Rhsim07G0122900 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.1e-14 82.8 62 67.7
Actinidia09233 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.5e-14 82.4 63 69.8
Aqoxy3G02496 Aquilegia oxysepala HOM05D001115 ORTHO05D001023 1.5e-14 82.4 61 67.2
MSTRG.27214 Avicennia marina HOM05D001115 ORTHO05D001023 1.5e-14 82.4 62 67.7
Peaxi162Scf00312g00726 Petunia axillaris HOM05D001115 ORTHO05D001023 1.5e-14 82.4 64 68.8
TAR629G2190 Trochodendron aralioides HOM05D001115 ORTHO05D001023 1.5e-14 82.4 61 65.6
vmacro14150 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 1.5e-14 82.4 62 67.7
CsaV3_1G017000 Cucumis sativus L. HOM05D001115 ORTHO05D001023 1.9e-14 82.0 62 69.4
CsaV3_3G049480 Cucumis sativus L. HOM05D001115 ORTHO05D001023 1.9e-14 82.0 62 69.4
Gohir.A09G198100 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.9e-14 82.0 62 71.0
Sed0014407 Sechium edule HOM05D001115 ORTHO05D001023 1.9e-14 82.0 62 69.4
PGSC0003DMG400024218 Solanum tuberosum HOM05D001115 ORTHO05D001023 1.9e-14 82.0 64 67.2
TWI15G0733 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 1.9e-14 82.0 62 71.0
ClCG09G012320 Citrullus lanatus HOM05D001115 ORTHO05D001023 2.5e-14 81.6 62 69.4
Gohir.D12G213100 Gossypium hirsutum HOM05D001115 ORTHO05D001023 2.5e-14 81.6 62 67.7
Gorai.008G228700 Gossypium raimondii HOM05D001115 ORTHO05D001023 2.5e-14 81.6 62 67.7
SalBow1G5749 Salvia bowleyana HOM05D001115 ORTHO05D001023 2.5e-14 81.6 62 66.1
Solyc08g077220.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 2.5e-14 81.6 64 67.2
Sopen08g025800 Solanum pennellii HOM05D001115 ORTHO05D001023 2.5e-14 81.6 64 67.2
vmacro00348 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 2.5e-14 81.6 62 64.5
BcaB07g32924 Brassica carinata HOM05D001115 ORTHO05D001023 3.3e-14 81.3 61 65.6
A09p33770 Brassica napus HOM05D001115 ORTHO05D001023 3.3e-14 81.3 61 65.6
C05p31850 Brassica napus HOM05D001115 ORTHO05D001023 3.3e-14 81.3 61 65.6
BolC5t31913H Brassica oleracea HOM05D001115 ORTHO05D001023 3.3e-14 81.3 61 65.6
BraA09t38927Z Brassica rapa HOM05D001115 ORTHO05D001023 3.3e-14 81.3 61 65.6
Lalb_Chr16g0379191 Lupinus albus HOM05D001115 ORTHO05D001023 3.3e-14 81.3 61 62.3
TWI60G1661 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 3.3e-14 81.3 62 71.0
TWI81G0776 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 3.3e-14 81.3 62 71.0
Glyma.17G152900 Glycine max HOM05D001115 ORTHO05D001023 4.3e-14 80.9 61 65.6
Nn6g33650 Nelumbo nucifera HOM05D001115 ORTHO05D001023 4.3e-14 80.9 61 67.2
Potri.001G146100 Populus trichocarpa HOM05D001115 ORTHO05D001023 4.3e-14 80.9 61 62.3
Potri.003G087800 Populus trichocarpa HOM05D001115 ORTHO05D001023 4.3e-14 80.9 61 63.9
SHI07507 Sapria himalayana HOM05D001115 ORTHO05D001023 5.6e-14 80.5 62 66.1
HPP92_014865 Vanilla planifolia HOM05D001115 ORTHO05D001023 5.6e-14 80.5 61 65.6
BcaB03g13735 Brassica carinata HOM05D001115 ORTHO05D001023 7.3e-14 80.1 62 64.5
CANSAT21G2140 Cannabis sativa HOM05D001115 ORTHO05D001023 7.3e-14 80.1 62 69.4
CARHR031820 Cardamine hirsuta HOM05D001115 ORTHO05D001023 7.3e-14 80.1 61 63.9
Duzib205G1909 Durio zibethinus HOM05D001115 ORTHO05D001023 7.3e-14 80.1 60 65.0
Hma1.2p1_2066F.1_g313050 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 7.3e-14 80.1 61 62.3
Nn1g00597 Nelumbo nucifera HOM05D001115 ORTHO05D001023 7.3e-14 80.1 61 65.6
Nn1g00599 Nelumbo nucifera HOM05D001115 ORTHO05D001023 7.3e-14 80.1 61 65.6
Sabra01G0114800 Salix brachista HOM05D001115 ORTHO05D001023 7.3e-14 80.1 67 58.2
BcaC05g27277 Brassica carinata HOM05D001115 ORTHO05D001023 9.6e-14 79.7 61 63.9
CiPaw.11G088100 Carya illinoinensis HOM05D001115 ORTHO05D001023 9.6e-14 79.7 62 67.7
COL.COLO4_17103 Corchorus olitorius HOM05D001115 ORTHO05D001023 9.6e-14 79.7 61 65.6
Oeu019055.1 Olea europaea HOM05D001115 ORTHO05D001023 9.6e-14 79.7 63 68.3
QL12p006905 Quercus lobata HOM05D001115 ORTHO05D001023 9.6e-14 79.7 61 63.9
Hma1.2p1_0311F.1_g121330 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 1.3e-13 79.3 63 68.3
TAR374G0269 Trochodendron aralioides HOM05D001115 ORTHO05D001023 1.3e-13 79.3 63 68.3
AL1G46590 Arabidopsis lyrata HOM05D001115 ORTHO05D001023 1.6e-13 79.0 62 67.7
Lj4g0026930 Lotus japonicus HOM05D001115 ORTHO05D001023 1.6e-13 79.0 61 59.0
Lalb_Chr16g0386121 Lupinus albus HOM05D001115 ORTHO05D001023 1.6e-13 79.0 61 60.7
Ca_22054_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 2.1e-13 78.6 61 60.7
AT1G32400 Arabidopsis thaliana HOM05D001115 ORTHO05D001023 2.8e-13 78.2 62 66.1
arahy.Tifrunner.gnm1.ann1.97MI0M Arachis hypogaea HOM05D001115 ORTHO05D001023 2.8e-13 78.2 61 60.7
arahy.Tifrunner.gnm1.ann1.TQ6BSY Arachis hypogaea HOM05D001115 ORTHO05D001023 2.8e-13 78.2 61 60.7
Hma1.2p1_0414F.1_g147790 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 2.8e-13 78.2 63 61.9
Lj8A289G61 Lonicera japonica HOM05D001115 ORTHO05D001023 2.8e-13 78.2 63 63.5
Sp1g28490 Schrenkiella parvula HOM05D001115 ORTHO05D001023 3.6e-13 77.8 62 66.1
CiPaw.12G060600 Carya illinoinensis HOM05D001115 ORTHO05D001023 4.8e-13 77.4 62 66.1
Gohir.A12G210400 Gossypium hirsutum HOM05D001115 ORTHO05D001023 4.8e-13 77.4 62 66.1
Psat2g174040 Pisum sativum HOM05D001115 ORTHO05D001023 4.8e-13 77.4 61 59.0
TPR.G8336 Trifolium pratense HOM05D001115 ORTHO05D001023 4.8e-13 77.4 61 59.0
MSTRG.1968 Avicennia marina HOM05D001115 ORTHO05D001023 6.2e-13 77.0 62 64.5
Eucgr.E00307 Eucalyptus grandis HOM05D001115 ORTHO05D001023 6.2e-13 77.0 62 69.4
Lj2A245G34 Lonicera japonica HOM05D001115 ORTHO05D001023 8.1e-13 76.6 63 66.7
PSO063G5143 Papaver somniferum HOM05D001115 ORTHO05D001023 8.1e-13 76.6 62 66.1
Thecc.03G233500 Theobroma cacao HOM05D001115 ORTHO05D001023 8.1e-13 76.6 61 62.3
VMungo1215G3245 Vigna mungo HOM05D001115 ORTHO05D001023 8.1e-13 76.6 62 61.3
GSVIVG01013236001 Vitis vinifera HOM05D001115 ORTHO05D001023 8.1e-13 76.6 61 62.3
Carub.0001s3079 Capsella rubella HOM05D001115 ORTHO05D001023 1.1e-12 76.3 62 64.5
Thhalv10008423m.g Eutrema salsugineum HOM05D001115 ORTHO05D001023 1.1e-12 76.3 62 66.1
Cfa012391 Carpinus fangiana HOM05D001115 ORTHO05D001023 1.4e-12 75.9 62 62.9
Psat4g078280 Pisum sativum HOM05D001115 ORTHO05D001023 1.4e-12 75.9 61 59.0
Lj2g0004413 Lotus japonicus HOM05D001115 ORTHO05D001023 1.8e-12 75.5 61 59.0
TAR636G1627 Trochodendron aralioides HOM05D001115 ORTHO05D001023 1.8e-12 75.5 62 62.9
Atru.chr6.1767 Acer truncatum HOM05D001115 ORTHO05D001023 2.4e-12 75.1 62 64.5
Aa31LG2G13610 Aethionema arabicum HOM05D001115 ORTHO05D001023 2.4e-12 75.1 65 63.1
Glyma.01G200700 Glycine max HOM05D001115 ORTHO05D001023 2.4e-12 75.1 62 59.7
PSO782G3745 Papaver somniferum HOM05D001115 ORTHO05D001023 2.4e-12 75.1 62 64.5
Sed0015720 Sechium edule HOM05D001115 ORTHO05D001023 2.4e-12 75.1 62 62.9
THA.LOC104798475 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 2.4e-12 75.1 61 63.9
Gohir.A08G159300 Gossypium hirsutum HOM05D001115 ORTHO05D001023 3.1e-12 74.7 61 60.7
Manes.15G173750 Manihot esculenta HOM05D001115 ORTHO05D001023 3.1e-12 74.7 63 68.3
Manes.17G019600 Manihot esculenta HOM05D001115 ORTHO05D001023 3.1e-12 74.7 61 60.7
Glyma.11G041400 Glycine max HOM05D001115 ORTHO05D001023 5.3e-12 73.9 62 59.7
Medtr4g098860 Medicago truncatula HOM05D001115 ORTHO05D001023 5.3e-12 73.9 61 57.4
Haze_08292 Corylus avellana HOM05D001115 ORTHO05D001023 6.9e-12 73.6 62 62.9
Gohir.D08G179700 Gossypium hirsutum HOM05D001115 ORTHO05D001023 6.9e-12 73.6 61 59.0
MBI04_g13866_MAGBIO Magnolia biondii HOM05D001115 ORTHO05D001023 6.9e-12 73.6 61 59.0
MD06G1039300 Malus domestica HOM05D001115 ORTHO05D001023 6.9e-12 73.6 64 70.3
Ca_24636_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 9.0e-12 73.2 61 59.0
Prupe.5G044200 Prunus persica HOM05D001115 ORTHO05D001023 9.0e-12 73.2 63 66.7
Sabra03G0057700 Salix brachista HOM05D001115 ORTHO05D001023 9.0e-12 73.2 61 57.4
CARHR031810 Cardamine hirsuta HOM05D001115 ORTHO05D001023 1.2e-11 72.8 61 59.0
DCAR_008296 Daucus carota HOM05D001115 ORTHO05D001023 1.2e-11 72.8 62 62.9
Gorai.004G188200 Gossypium raimondii HOM05D001115 ORTHO05D001023 1.2e-11 72.8 61 59.0
THA.LOC104812751 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 1.2e-11 72.8 61 60.7
EL10Ac5g12184 Beta vulgaris HOM05D001115 ORTHO05D001023 2.0e-11 72.0 61 57.4
Duzib084G0778 Durio zibethinus HOM05D001115 ORTHO05D001023 2.0e-11 72.0 62 62.9
HPP92_020693 Vanilla planifolia HOM05D001115 ORTHO05D001023 2.0e-11 72.0 61 59.0
arahy.Tifrunner.gnm1.ann1.97VU5P Arachis hypogaea HOM05D001115 ORTHO05D001023 2.6e-11 71.6 62 56.5
arahy.Tifrunner.gnm1.ann1.A6QGA7 Arachis hypogaea HOM05D001115 ORTHO05D001023 2.6e-11 71.6 62 56.5
CiPaw.12G060800 Carya illinoinensis HOM05D001115 ORTHO05D001023 3.4e-11 71.2 61 60.7
MD16G1270100 Malus domestica HOM05D001115 ORTHO05D001023 3.4e-11 71.2 64 67.2
HPP92_020795 Vanilla planifolia HOM05D001115 ORTHO05D001023 3.4e-11 71.2 61 59.0
Hund14425 Selenicereus undatus HOM05D001115 ORTHO05D001023 4.5e-11 70.9 61 60.7
AUR62007237 Chenopodium quinoa HOM05D001115 ORTHO05D001023 5.8e-11 70.5 61 57.4
AUR62018763 Chenopodium quinoa HOM05D001115 ORTHO05D001023 5.8e-11 70.5 61 57.4
Sc01g0007710 Simmondsia chinensis HOM05D001115 ORTHO05D001023 5.8e-11 70.5 61 62.3
VMungo1215G0152 Vigna mungo HOM05D001115 ORTHO05D001023 5.8e-11 70.5 62 58.1
Zm00001eb024230 Zea mays HOM05D001115 ORTHO05D001023 5.8e-11 70.5 63 61.9
CDE11G1034 Ceratophyllum demersum HOM05D001115 ORTHO05D001023 7.6e-11 70.1 60 58.3
Os08g0282000 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 7.6e-11 70.1 63 60.3
Phvul.002G004900 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 7.6e-11 70.1 63 55.6
TPR.G19180 Trifolium pratense HOM05D001115 ORTHO05D001023 7.6e-11 70.1 62 56.5
Zm00001eb390640 Zea mays HOM05D001115 ORTHO05D001023 1.3e-10 69.3 62 62.9
Migut.E00800 Erythranthe guttata HOM05D001115 ORTHO05D001023 1.7e-10 68.9 63 60.3
Migut.E00908 Erythranthe guttata HOM05D001115 ORTHO05D001023 1.7e-10 68.9 63 60.3
Medtr5g014080 Medicago truncatula HOM05D001115 ORTHO05D001023 1.7e-10 68.9 62 56.5
Phvul.002G005100 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 2.2e-10 68.6 62 59.7
Oeu028034.2 Olea europaea HOM05D001115 ORTHO05D001023 2.9e-10 68.2 63 55.6
TPR.G28484 Trifolium pratense HOM05D001115 ORTHO05D001023 2.9e-10 68.2 62 54.8
Phvul.002G005000 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 3.8e-10 67.8 62 54.8
Migut.E00907 Erythranthe guttata HOM05D001115 ORTHO05D001023 6.4e-10 67.0 63 57.1
ATR0605G037 Amborella trichopoda HOM05D001115 ORTHO05D001023 1.1e-09 66.2 60 61.7
Hund11267 Selenicereus undatus HOM05D001115 ORTHO05D001023 1.9e-09 65.5 62 54.8
CDE02G4783 Ceratophyllum demersum HOM05D001115 ORTHO05D001023 5.4e-09 63.9 60 56.7
VMungo1215G2308 Vigna mungo HOM05D001115 ORTHO05D001023 7.1e-09 63.5 62 53.2
Oeu053060.2 Olea europaea HOM05D001115 ORTHO05D001023 1.2e-08 62.8 64 54.7
HanXRQChr05g0138061 Helianthus annuus HOM05D001115 ORTHO05D001023 2.7e-08 61.6 30 93.3
Aa31LG9G15400 Aethionema arabicum HOM05D000044 ORTHO05D000051 1.0e-07 59.7 61 49.2
Eucgr.D02156 Eucalyptus grandis HOM05D001115 ORTHO05D001023 3.0e-07 58.2 65 49.2
FvH4_5g21300 Fragaria vesca HOM05D001115 ORTHO05D001023 1.5e-06 55.8 61 52.5
FAN04G3256 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.5e-06 55.8 61 52.5
FAN08G1470 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.5e-06 55.8 61 52.5
FAN13G1058 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.5e-06 55.8 61 52.5
FAN18G0875 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.5e-06 55.8 61 52.5
PGR031G1994 Punica granatum HOM05D001115 ORTHO05D001023 1.5e-06 55.8 61 49.2
RcHm_v2.0_Chr7g0208641 Rosa chinensis HOM05D001115 ORTHO05D001023 2.5e-06 55.1 61 52.5
ATR0049G063 Amborella trichopoda HOM05D001115 ORTHO05D001023 7.4e-06 53.5 66 51.5


User provided reference genes

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