Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 8.6e-287 989.6 482 100.0
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 5.0e-226 787.7 491 78.4
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.2e-203 713.4 387 87.6
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.0e-198 696.0 484 68.2
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 3.7e-197 691.8 485 69.1
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 1.6e-192 676.4 471 68.6
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.6e-187 659.8 485 65.8
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 7.8e-187 657.5 412 75.5
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 7.8e-187 657.5 491 64.6
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 8.9e-183 644.0 461 67.5
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 7.5e-182 641.0 478 64.2
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.7e-181 639.8 485 65.2
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 3.7e-181 638.6 485 65.2
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 3.2e-180 635.6 484 65.3
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 3.5e-179 632.1 480 63.3
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 7.8e-179 630.9 415 71.3
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.3e-178 629.4 455 66.8
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 1.9e-177 626.3 472 65.0
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 3.3e-177 625.5 496 62.5
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 5.6e-177 624.8 489 63.2
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.2e-176 623.6 480 62.7
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 3.6e-176 622.1 476 63.4
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.8e-175 619.8 471 64.1
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 3.1e-175 619.0 464 65.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 5.2e-175 618.2 480 63.5
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.2e-174 617.1 472 65.0
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.6e-174 615.9 450 66.7
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 5.8e-174 614.8 473 65.8
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 9.9e-174 614.0 484 61.2
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.2e-173 612.8 476 62.4
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 6.4e-173 611.3 468 63.0
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.9e-172 609.8 478 61.1
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 2.4e-172 609.4 496 60.3
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 4.1e-172 608.6 468 62.0
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 4.1e-172 608.6 467 63.6
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.4e-172 608.2 415 69.6
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 5.4e-172 608.2 476 62.6
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 6.0e-171 604.7 549 56.8
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.3e-170 603.6 486 61.1
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 3.0e-170 602.4 481 61.5
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 3.9e-170 602.1 395 72.4
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 5.1e-170 601.7 472 61.4
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 5.1e-170 601.7 484 62.0
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 6.6e-170 601.3 463 62.9
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 8.6e-170 600.9 481 61.5
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.1e-169 600.5 474 62.9
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 1.9e-169 599.7 463 62.4
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.5e-169 599.4 490 60.6
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 7.3e-169 597.8 482 60.4
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 4.7e-168 595.1 469 61.8
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 8.1e-168 594.3 486 59.7
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 1.8e-167 593.2 425 64.7
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.8e-167 593.2 497 59.4
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.8e-167 593.2 487 59.1
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.8e-167 593.2 468 62.2
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 2.4e-167 592.8 467 63.0
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 2.4e-167 592.8 465 61.9
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 3.1e-167 592.4 485 60.0
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.2e-167 591.7 441 65.8
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 6.8e-167 591.3 497 59.6
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 8.9e-167 590.9 488 59.4
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.5e-166 590.1 469 61.4
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.6e-166 589.3 453 62.5
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 2.6e-166 589.3 418 66.0
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 9.9e-166 587.4 429 65.7
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.3e-165 587.0 487 57.7
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.7e-165 586.6 520 58.8
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 1.7e-165 586.6 482 60.2
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 2.2e-165 586.3 425 65.2
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 8.4e-165 584.3 447 63.3
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 8.4e-165 584.3 445 66.1
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 8.4e-165 584.3 459 61.7
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 8.4e-165 584.3 439 63.8
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 6.0e-163 578.2 444 60.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 8.7e-162 574.3 517 55.9
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.4e-156 556.2 500 56.2
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.4e-156 556.2 464 61.0
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 4.6e-155 552.0 403 64.3
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 4.6e-155 552.0 397 65.2
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.6e-155 552.0 337 76.6
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 3.6e-152 542.3 369 68.6
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 4.8e-152 542.0 449 57.5
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 8.1e-152 541.2 384 65.4
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 4.5e-150 535.4 474 55.5
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.3e-146 523.1 490 54.1
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.6e-145 518.5 425 59.8
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.8e-144 516.2 375 64.3
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.5e-142 510.4 500 53.6
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 9.9e-142 507.7 307 76.2
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 3.9e-138 495.7 384 63.0
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.1e-135 487.6 532 51.1
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 6.9e-135 485.0 487 53.6
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.0e-133 481.1 397 59.2
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 2.2e-128 463.4 419 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 2.0e-126 456.8 362 57.7
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 3.4e-126 456.1 428 53.0
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 3.0e-122 443.0 331 60.1
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 8.8e-122 441.4 399 55.6
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.4e-116 424.1 328 62.2
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.4e-114 417.5 387 56.6
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 2.3e-106 390.2 268 69.8
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 2.9e-93 346.7 239 70.3
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 2.9e-93 346.7 239 70.3
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.6e-91 340.9 359 48.2
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 5.2e-90 335.9 345 45.8
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.8e-88 329.3 320 51.2
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 5.4e-87 325.9 284 56.0
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 2.9e-85 320.1 232 66.4
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 3.8e-85 319.7 232 66.4
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.2e-81 308.1 174 78.2
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 2.6e-73 280.4 247 55.1
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 2.6e-73 280.4 247 55.1
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.9e-71 274.2 383 38.6
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.3e-61 241.5 341 38.1
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.7e-61 241.1 239 53.1
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 3.0e-61 240.4 232 53.9
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.0e-57 227.6 184 63.0
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.2e-54 218.4 235 51.9
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 1.6e-51 208.0 154 63.0
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.3e-43 181.8 106 75.5
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 8.4e-40 169.1 343 34.7
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 2.5e-36 157.5 104 64.4
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 2.1e-30 137.9 74 79.7
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.7e-30 137.5 340 31.8
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.3e-29 134.4 73 80.8
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 5.7e-20 103.2 56 75.0
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.4e-18 98.6 369 25.5
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 5.3e-18 96.7 128 45.3
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 4.5e-09 67.0 179 32.4
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 2.7e-06 57.8 83 31.3


User provided reference genes

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