Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 0.0e+00 1536.9 781 100.0
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 1.4e-265 919.8 819 61.4
ECA238G2411 Erigeron canadensis HOM05D001090 ORTHO05D008663 2.4e-262 909.1 822 61.4
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 3.0e-204 716.1 870 48.4
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.2e-200 704.1 864 47.9
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 4.0e-193 679.1 860 46.9
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 7.6e-192 674.9 842 46.0
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 4.9e-191 672.2 842 47.3
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 1.4e-185 654.1 860 45.6
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 7.6e-184 648.3 834 44.5
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 1.5e-176 624.0 853 41.5
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 1.9e-174 617.1 828 44.6
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 4.2e-174 615.9 881 42.8
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 2.7e-173 613.2 855 42.8
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 3.6e-173 612.8 836 43.8
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 1.8e-172 610.5 837 43.2
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 1.5e-171 607.4 864 43.8
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 2.0e-171 607.1 1006 40.1
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 2.8e-170 603.2 863 43.1
PSO017G6856 Papaver somniferum HOM05D001090 ORTHO05D008663 4.8e-170 602.4 901 41.5
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 5.3e-169 599.0 756 46.8
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 1.5e-168 597.4 811 43.2
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 1.0e-167 594.7 829 42.5
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 1.3e-167 594.3 829 43.1
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 1.7e-167 594.0 843 42.6
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 3.8e-167 592.8 851 42.5
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 5.0e-167 592.4 851 42.7
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 6.5e-167 592.0 802 42.8
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 1.9e-166 590.5 841 41.3
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 3.2e-166 589.7 883 40.4
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 9.4e-166 588.2 838 42.1
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 2.1e-165 587.0 836 40.3
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 2.7e-165 586.6 843 42.2
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 1.0e-164 584.7 818 44.0
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 3.3e-163 579.7 845 42.1
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 3.3e-163 579.7 844 43.1
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 9.7e-163 578.2 831 42.6
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 2.2e-162 577.0 810 43.2
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 1.1e-161 574.7 831 40.1
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 7.0e-161 572.0 868 38.4
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 1.6e-160 570.9 852 42.7
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 2.0e-160 570.5 849 41.3
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 6.5e-159 565.5 828 44.0
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 5.5e-158 562.4 832 43.4
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.6e-157 560.8 821 44.1
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 4.7e-157 559.3 822 44.2
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 8.0e-157 558.5 875 40.1
SalBow7G3344 Salvia bowleyana HOM05D001090 ORTHO05D008663 2.3e-156 557.0 835 39.9
SalBow7G3826 Salvia bowleyana HOM05D001090 ORTHO05D008663 5.2e-156 555.8 835 39.8
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 2.0e-155 553.9 831 42.7
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 3.3e-155 553.1 819 40.9
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 5.7e-155 552.4 852 40.1
PSO170G6226 Papaver somniferum HOM05D001090 ORTHO05D008663 5.7e-155 552.4 886 40.2
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 7.5e-155 552.0 834 39.8
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 9.7e-155 551.6 853 40.7
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 9.7e-155 551.6 832 43.4
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.3e-154 551.2 828 43.1
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 4.8e-154 549.3 857 40.5
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 1.1e-153 548.1 853 40.1
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 1.2e-152 544.7 839 40.9
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 1.2e-152 544.7 758 41.8
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 7.2e-150 535.4 852 36.5
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 1.6e-149 534.3 834 40.2
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 2.1e-149 533.9 758 41.4
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 1.0e-148 531.6 899 36.3
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 9.8e-147 525.0 829 40.7
CsaV3_1G032930 Cucumis sativus L. HOM05D001090 ORTHO05D008663 1.3e-146 524.6 849 39.6
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 1.1e-145 521.5 825 40.6
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 1.1e-145 521.5 829 39.9
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 2.4e-145 520.4 825 40.5
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 4.1e-145 519.6 825 39.9
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 5.4e-145 519.2 831 39.7
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 9.1e-145 518.5 818 39.5
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 9.1e-145 518.5 818 39.5
MELO3C002690.2 Cucumis melo HOM05D001090 ORTHO05D008663 2.7e-144 516.9 840 39.6
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 5.9e-144 515.8 828 36.7
GSVIVG01008814001 Vitis vinifera HOM05D001090 ORTHO05D008663 1.0e-143 515.0 711 43.5
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 7.2e-142 508.8 825 40.0
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 2.3e-140 503.8 820 40.0
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 2.6e-139 500.4 827 39.4
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 2.5e-134 483.8 843 38.9
Sed0003425 Sechium edule HOM05D001090 ORTHO05D008663 4.9e-130 469.5 760 40.5
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 2.3e-127 460.7 809 37.7
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 1.2e-125 454.9 815 39.9
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 3.4e-123 446.8 828 35.5
ATR0584G005 Amborella trichopoda HOM05D001090 ORTHO05D008663 4.1e-121 439.9 849 35.9
HPP92_013748 Vanilla planifolia HOM05D001090 ORTHO05D008663 3.9e-119 433.3 837 35.7
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 5.0e-119 433.0 834 33.5
Sp1g19180 Schrenkiella parvula HOM05D001090 ORTHO05D008663 5.6e-118 429.5 638 41.5
AUR62040524 Chenopodium quinoa HOM05D001090 ORTHO05D008663 1.1e-108 398.7 825 34.2
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 8.9e-108 395.6 765 33.7
TPR.G13463 Trifolium pratense HOM05D001090 ORTHO05D008663 2.4e-105 387.5 617 40.0
Hma1.2p1_0014F.1_g010110 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 2.3e-95 354.4 578 38.1
Cc10_g12630 Coffea canephora HOM05D001090 ORTHO05D008663 2.1e-93 347.8 434 42.4
Zm00001eb337940 Zea mays HOM05D001090 ORTHO05D008663 2.4e-81 307.8 677 32.3
Os05g0422300 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D008663 7.4e-78 296.2 669 32.1
CDE02G2378 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 1.0e-74 285.8 297 50.8
Medtr3g088535 Medicago truncatula HOM05D001090 ORTHO05D008663 2.9e-74 284.3 558 34.2
SEGI_33865 Sequoiadendron giganteum HOM05D001090 ORTHO05D008663 3.2e-73 280.8 743 29.7
Medtr3g088545 Medicago truncatula HOM05D001090 ORTHO05D008663 3.5e-72 277.3 278 55.0
Ca_16603_v3 Cicer arietinum L. HOM05D001090 ORTHO05D008663 1.0e-71 275.8 562 33.6
SHI09188 Sapria himalayana HOM05D001090 ORTHO05D008663 1.1e-70 272.3 564 33.2
SHI09187 Sapria himalayana HOM05D001090 ORTHO05D008663 1.4e-60 238.8 316 45.9
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 6.1e-56 223.4 235 55.7
Pp3c14_11620 Physcomitrium patens HOM05D001090 ORTHO05D008663 1.3e-53 215.7 906 26.5
CAN.G342.10 Capsicum annuum HOM05D001090 ORTHO05D008663 6.3e-53 213.4 548 29.9
AagrBONN_evm.TU.Sc2ySwM_368.1353 Anthoceros agrestis HOM05D001090 ORTHO05D008663 4.8e-45 187.2 293 40.6
SMO011G0047 Selaginella moellendorffii HOM05D001090 ORTHO05D008663 2.4e-44 184.9 777 26.4
Dinv40410 Davidia involucrata HOM05D001090 ORTHO05D008663 6.8e-31 140.2 103 66.0
Glyma.10G228500 Glycine max HOM05D001090 ORTHO05D008663 5.7e-30 137.1 254 32.3
Mapoly0020s0076 Marchantia polymorpha HOM05D001090 ORTHO05D008663 1.7e-29 135.6 389 29.8
CSS0004473 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.5e-22 112.5 164 45.1
CSS0019679 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 6.3e-21 107.1 164 43.9
HanXRQChr10g0316851 Helianthus annuus HOM05D000066 ORTHO05D009093 1.7e-18 99.0 55 87.3
CSS0043152 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 2.0e-14 85.5 164 39.6
CSS0030841 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 2.9e-13 81.6 164 36.0
CDE08G1173 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 1.0e-10 73.2 142 31.7
FvH4_5g25800 Fragaria vesca HOM05D000539 ORTHO05D000592 1.7e-10 72.4 170 27.6
Lsat_1_v5_gn_3_23020 Lactuca sativa HOM05D001090 ORTHO05D008663 2.3e-10 72.0 51 60.8
Prupe.1G449400 Prunus persica HOM05D000453 ORTHO05D006365 9.5e-09 66.6 213 26.8
Solyc03g111780.1 Solanum lycopersicum HOM05D000453 ORTHO05D000387 9.5e-09 66.6 150 26.0
CBR_g8279 Chara braunii HOM05D001090 ORTHO05D008663 1.2e-08 66.2 73 41.1
Dinv40409 Davidia involucrata HOM05D001090 ORTHO05D008663 6.2e-08 63.9 35 74.3
THA.LOC104825546 Tarenaya hassleriana HOM05D000453 ORTHO05D000387 8.0e-08 63.5 233 28.8
RcHm_v2.0_Chr4g0432531 Rosa chinensis HOM05D000453 ORTHO05D000387 1.1e-07 63.2 145 26.2
Zm00001eb079390 Zea mays HOM05D000453 ORTHO05D000387 1.1e-07 63.2 164 25.6
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 1.4e-07 62.8 125 34.4
AL1G40410 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 2.3e-07 62.0 142 26.8
GSVIVG01007589001 Vitis vinifera HOM05D000453 ORTHO05D000387 4.0e-07 61.2 150 27.3
A04p07360 Brassica napus HOM05D000453 ORTHO05D000387 5.2e-07 60.8 169 27.2
BraA04t16432Z Brassica rapa HOM05D000453 ORTHO05D000387 5.2e-07 60.8 169 27.2
Eucgr.K02772 Eucalyptus grandis HOM05D000453 ORTHO05D000387 5.2e-07 60.8 129 30.2
Duzib248G0831 Durio zibethinus HOM05D000453 ORTHO05D000387 6.8e-07 60.5 146 24.7
FvH4_4g25271 Fragaria vesca HOM05D000453 ORTHO05D000387 8.9e-07 60.1 145 25.5
SEGI_30951 Sequoiadendron giganteum HOM05D001090 ORTHO05D002119 8.9e-07 60.1 75 41.3
AT1G24530 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 1.2e-06 59.7 142 26.1
Pp3c14_3010 Physcomitrium patens HOM05D001090 ORTHO05D008663 1.5e-06 59.3 76 36.8
PGR031G3982 Punica granatum HOM05D001335 ORTHO05D001184 1.5e-06 59.3 71 39.4
TWI36G1770 Tripterygium wilfordii HOM05D000453 ORTHO05D000387 2.0e-06 58.9 149 25.5
Gorai.002G188800 Gossypium raimondii HOM05D000453 ORTHO05D000387 2.6e-06 58.5 145 25.5
SMO143G0139 Selaginella moellendorffii HOM05D001090 ORTHO05D008663 2.6e-06 58.5 67 41.8
BcaC07g40817 Brassica carinata HOM05D000453 ORTHO05D000387 3.4e-06 58.2 285 22.5
Glyma.05G043500 Glycine max HOM05D000453 ORTHO05D000387 3.4e-06 58.2 147 27.2
QL03p056285 Quercus lobata HOM05D000453 ORTHO05D000387 3.4e-06 58.2 145 25.5
GSVIVG01022679001 Vitis vinifera HOM05D001090 ORTHO05D002781 3.4e-06 58.2 41 61.0
EL10Ac6g14832 Beta vulgaris HOM05D000453 ORTHO05D000387 4.4e-06 57.8 175 27.4
Carub.0001s2558 Capsella rubella HOM05D000453 ORTHO05D000387 4.4e-06 57.8 142 25.4
Ca_28149_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 4.4e-06 57.8 152 27.0
Ca_30673_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 4.4e-06 57.8 152 27.0
COL.COLO4_23512 Corchorus olitorius HOM05D000453 ORTHO05D000387 4.4e-06 57.8 145 23.4
Ah.03g133510 Amaranthus hybridus HOM05D000453 ORTHO05D000387 5.8e-06 57.4 153 27.5
Cc04_g10860 Coffea canephora HOM05D000453 ORTHO05D000387 5.8e-06 57.4 161 25.5
BolC5t31025H Brassica oleracea HOM05D000453 ORTHO05D000387 7.5e-06 57.0 160 26.9
ECA232G4971 Erigeron canadensis HOM05D000453 ORTHO05D000387 7.5e-06 57.0 128 31.2
Manes.14G057200 Manihot esculenta HOM05D000453 ORTHO05D000387 7.5e-06 57.0 153 24.2
Thecc.02G266100 Theobroma cacao HOM05D000453 ORTHO05D000387 7.5e-06 57.0 145 24.1


User provided reference genes

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