Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0040701 Helianthus annuus HOM05D006825 ORTHO05D008510 5.5e-29 130.2 61 100.0
HanXRQChr09g0256941 Helianthus annuus HOM05D006825 ORTHO05D008510 2.8e-17 91.3 47 87.2
ECA232G1215 Erigeron canadensis HOM05D006825 ORTHO05D008510 3.7e-17 90.9 47 85.1
Lsat_1_v5_gn_4_145901 Lactuca sativa HOM05D006825 ORTHO05D008510 1.4e-16 89.0 47 83.0
Lsat_1_v5_gn_4_145960 Lactuca sativa HOM05D006825 ORTHO05D008510 1.4e-16 89.0 47 83.0
MSTRG.14307 Avicennia marina HOM05D006825 ORTHO05D008510 1.8e-16 88.6 47 83.0
SalBow7G2494 Salvia bowleyana HOM05D006825 ORTHO05D008510 1.8e-16 88.6 47 83.0
Nitab4.5_0000438g0130 Nicotiana tabacum HOM05D006825 ORTHO05D008510 2.4e-16 88.2 47 80.9
Nitab4.5_0004340g0050 Nicotiana tabacum HOM05D006825 ORTHO05D008510 3.1e-16 87.8 47 78.7
Cfa006985 Carpinus fangiana HOM05D000348 ORTHO05D000244 5.3e-16 87.0 47 80.9
Peaxi162Scf00635g00623 Petunia axillaris HOM05D006825 ORTHO05D008510 5.3e-16 87.0 47 78.7
CAN.G1817.4 Capsicum annuum HOM05D006825 ORTHO05D008510 6.9e-16 86.7 47 78.7
Migut.H02145 Erythranthe guttata HOM05D006825 ORTHO05D008510 6.9e-16 86.7 47 83.0
PGSC0003DMG400022529 Solanum tuberosum HOM05D006825 ORTHO05D008510 6.9e-16 86.7 47 78.7
Solyc03g033450.4 Solanum lycopersicum HOM05D006825 ORTHO05D008510 9.0e-16 86.3 47 76.6
Sopen03g006200 Solanum pennellii HOM05D006825 ORTHO05D008510 9.0e-16 86.3 47 76.6
Gohir.A02G171400 Gossypium hirsutum HOM05D006825 ORTHO05D008510 1.2e-15 85.9 47 78.7
Gohir.D03G008700 Gossypium hirsutum HOM05D006825 ORTHO05D008510 1.2e-15 85.9 47 78.7
Gorai.003G008900 Gossypium raimondii HOM05D006825 ORTHO05D008510 1.2e-15 85.9 47 78.7
Haze_03748 Corylus avellana HOM05D006825 ORTHO05D008510 1.5e-15 85.5 47 78.7
Atru.chr6.2520 Acer truncatum HOM05D006825 ORTHO05D008510 2.6e-15 84.7 47 76.6
Ah.03g148930 Amaranthus hybridus HOM05D006825 ORTHO05D008510 2.6e-15 84.7 47 78.7
CANSAT25G1468 Cannabis sativa HOM05D006825 ORTHO05D008510 3.4e-15 84.3 47 78.7
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 3.4e-15 84.3 44 81.8
Lj4A220T100 Lonicera japonica HOM05D006825 ORTHO05D008510 3.4e-15 84.3 47 74.5
MELO3C007916.2 Cucumis melo HOM05D006825 ORTHO05D008510 4.5e-15 84.0 47 76.6
CsaV3_6G047250 Cucumis sativus L. HOM05D006825 ORTHO05D008510 4.5e-15 84.0 47 76.6
Oeu053236.1 Olea europaea HOM05D006825 ORTHO05D008510 4.5e-15 84.0 47 78.7
AUR62003356 Chenopodium quinoa HOM05D006825 ORTHO05D008510 5.9e-15 83.6 47 76.6
AUR62029480 Chenopodium quinoa HOM05D006825 ORTHO05D008510 5.9e-15 83.6 47 76.6
Sed0006507 Sechium edule HOM05D000348 ORTHO05D000244 5.9e-15 83.6 47 78.7
vmacro22141 Vaccinium macrocarpon HOM05D006825 ORTHO05D008510 5.9e-15 83.6 47 78.7
Aa31LG1G14680 Aethionema arabicum HOM05D006825 ORTHO05D008510 7.7e-15 83.2 48 81.2
Dinv33645 Davidia involucrata HOM05D006825 ORTHO05D008510 7.7e-15 83.2 47 74.5
QL06p050789 Quercus lobata HOM05D006825 ORTHO05D008510 7.7e-15 83.2 47 76.6
EL10Ac6g15487 Beta vulgaris HOM05D006825 ORTHO05D008510 1.0e-14 82.8 47 76.6
BcaC03g18427 Brassica carinata HOM05D006825 ORTHO05D008510 1.0e-14 82.8 48 79.2
A02p44590 Brassica napus HOM05D006825 ORTHO05D008510 1.0e-14 82.8 48 79.2
BolC2t12557H Brassica oleracea HOM05D006825 ORTHO05D008510 1.0e-14 82.8 48 79.2
BraA02t09375Z Brassica rapa HOM05D006825 ORTHO05D008510 1.0e-14 82.8 48 79.2
Ciclev10025798m.g Citrus clementina HOM05D006825 ORTHO05D008510 1.0e-14 82.8 47 76.6
Duzib147G0784 Durio zibethinus HOM05D006825 ORTHO05D008510 1.0e-14 82.8 47 74.5
Medtr8g075430 Medicago truncatula HOM05D006825 ORTHO05D008510 1.0e-14 82.8 47 76.6
Thecc.01G016500 Theobroma cacao HOM05D006825 ORTHO05D008510 1.0e-14 82.8 47 74.5
CSS0030622 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 1.3e-14 82.4 47 76.6
CSS0032071 Camellia sinensis var. sinensis HOM05D006825 ORTHO05D008510 1.3e-14 82.4 47 76.6
CiPaw.08G130700 Carya illinoinensis HOM05D006825 ORTHO05D008510 1.3e-14 82.4 47 76.6
Thhalv10004380m.g Eutrema salsugineum HOM05D006825 ORTHO05D008510 1.3e-14 82.4 48 79.2
Glyma.02G047100 Glycine max HOM05D006825 ORTHO05D008510 1.3e-14 82.4 47 74.5
Prupe.7G169900 Prunus persica HOM05D006825 ORTHO05D008510 1.3e-14 82.4 47 74.5
Sp2g30510 Schrenkiella parvula HOM05D006825 ORTHO05D008510 1.3e-14 82.4 48 79.2
TPR.G39556 Trifolium pratense HOM05D006825 ORTHO05D008510 1.3e-14 82.4 47 74.5
GSVIVG01018762001 Vitis vinifera HOM05D006825 ORTHO05D008510 1.3e-14 82.4 47 76.6
MD02G1129700 Malus domestica HOM05D006825 ORTHO05D008510 1.7e-14 82.0 47 74.5
DCAR_021509 Daucus carota HOM05D006825 ORTHO05D008510 2.2e-14 81.6 44 79.5
MD15G1244000 Malus domestica HOM05D006825 ORTHO05D008510 2.2e-14 81.6 47 74.5
Rhsim10G0211100 Rhododendron simsii HOM05D006825 ORTHO05D008510 2.2e-14 81.6 47 76.6
Hund14052 Selenicereus undatus HOM05D006825 ORTHO05D008510 2.2e-14 81.6 47 74.5
Cc07_g10910 Coffea canephora HOM05D006825 ORTHO05D008510 2.9e-14 81.3 47 74.5
RcHm_v2.0_Chr2g0099251 Rosa chinensis HOM05D006825 ORTHO05D008510 2.9e-14 81.3 47 74.5
VMungo0251G0870 Vigna mungo HOM05D006825 ORTHO05D008510 2.9e-14 81.3 47 72.3
AL8G45350 Arabidopsis lyrata HOM05D006825 ORTHO05D008510 3.8e-14 80.9 48 77.1
Ca_22387_v3 Cicer arietinum L. HOM05D006825 ORTHO05D008510 3.8e-14 80.9 47 72.3
Lalb_Chr05g0229811 Lupinus albus HOM05D006825 ORTHO05D008510 3.8e-14 80.9 44 79.5
Nn3g20374 Nelumbo nucifera HOM05D006825 ORTHO05D008510 3.8e-14 80.9 47 74.5
Aqoxy2G04041 Aquilegia oxysepala HOM05D006825 ORTHO05D008510 6.5e-14 80.1 44 79.5
CARHR281560 Cardamine hirsuta HOM05D006825 ORTHO05D008510 6.5e-14 80.1 48 77.1
Os02g0320100 Oryza sativa ssp. japonica HOM05D006825 ORTHO05D008510 6.5e-14 80.1 47 76.6
Phvul.003G264100 Phaseolus vulgaris HOM05D006825 ORTHO05D008510 6.5e-14 80.1 45 75.6
Sc03g0003620 Simmondsia chinensis HOM05D006825 ORTHO05D008510 6.5e-14 80.1 47 74.5
THA.LOC104821331 Tarenaya hassleriana HOM05D006825 ORTHO05D008510 6.5e-14 80.1 48 77.1
FvH4_1g11660 Fragaria vesca HOM05D006825 ORTHO05D008510 8.5e-14 79.7 47 72.3
Lj4g0003754 Lotus japonicus HOM05D006825 ORTHO05D008510 8.5e-14 79.7 47 70.2
Carub.0008s2832 Capsella rubella HOM05D006825 ORTHO05D008510 1.1e-13 79.3 50 72.0
Cpa.g.sc6.269 Carica papaya HOM05D006825 ORTHO05D008510 1.1e-13 79.3 48 75.0
CDE01G0266 Ceratophyllum demersum HOM05D006825 ORTHO05D008510 1.4e-13 79.0 47 72.3
Psat4g100720 Pisum sativum HOM05D006825 ORTHO05D008510 1.4e-13 79.0 47 70.2
TWI09G1238 Tripterygium wilfordii HOM05D006825 ORTHO05D008510 1.4e-13 79.0 47 66.0
Eucgr.I02337 Eucalyptus grandis HOM05D006825 ORTHO05D008510 1.9e-13 78.6 47 70.2
FAN19G1602 Fragaria x ananassa HOM05D006825 ORTHO05D008510 1.9e-13 78.6 47 72.3
FAN26G0347 Fragaria x ananassa HOM05D006825 ORTHO05D008510 1.9e-13 78.6 44 75.0
FAN28G2055 Fragaria x ananassa HOM05D006825 ORTHO05D008510 1.9e-13 78.6 44 75.0
TAR626G0952 Trochodendron aralioides HOM05D006825 ORTHO05D008510 1.9e-13 78.6 47 70.2
AT5G66180 Arabidopsis thaliana HOM05D006825 ORTHO05D008510 2.5e-13 78.2 48 75.0
ATR1098G103 Amborella trichopoda HOM05D006825 ORTHO05D008510 3.2e-13 77.8 48 72.9
PSO541G4668 Papaver somniferum HOM05D006825 ORTHO05D008510 3.2e-13 77.8 47 72.3
PGR119G0791 Punica granatum HOM05D006825 ORTHO05D008510 3.2e-13 77.8 47 68.1
arahy.Tifrunner.gnm1.ann1.K0MBH8 Arachis hypogaea HOM05D006825 ORTHO05D008510 5.5e-13 77.0 44 75.0
Zm00001eb417020 Zea mays HOM05D006825 ORTHO05D008510 5.5e-13 77.0 47 72.3
arahy.Tifrunner.gnm1.ann1.JPTZ14 Arachis hypogaea HOM05D006825 ORTHO05D008510 9.4e-13 76.3 40 77.5
unitig_744.g24494 Utricularia gibba HOM05D000120 ORTHO05D008510 9.4e-13 76.3 47 74.5
Manes.01G148100 Manihot esculenta HOM05D006825 ORTHO05D008510 1.2e-12 75.9 45 71.1
SGA_v2.0_scaffold80G25916 Striga asiatica HOM05D006825 ORTHO05D008510 1.2e-12 75.9 48 72.9
HPP92_013273 Vanilla planifolia HOM05D006825 ORTHO05D008510 1.2e-12 75.9 47 70.2
Mapoly0052s0057 Marchantia polymorpha HOM05D006825 ORTHO05D008510 2.1e-12 75.1 47 68.1
Potri.007G056800 Populus trichocarpa HOM05D006825 ORTHO05D008510 2.1e-12 75.1 47 68.1
Sabra07G0048700 Salix brachista HOM05D006825 ORTHO05D008510 2.7e-12 74.7 56 60.7
SMO347G0256 Selaginella moellendorffii HOM05D006825 ORTHO05D008510 2.7e-12 74.7 47 66.0
AagrBONN_evm.TU.Sc2ySwM_344.4862 Anthoceros agrestis HOM05D006825 ORTHO05D008510 6.1e-12 73.6 47 66.0
SEGI_00238 Sequoiadendron giganteum HOM05D006825 ORTHO05D008510 6.1e-12 73.6 47 63.8
CBR_g38194 Chara braunii HOM05D006825 ORTHO05D008510 2.3e-11 71.6 47 63.8
FAN23G1707 Fragaria x ananassa HOM05D000348 ORTHO05D000244 2.3e-11 71.6 36 80.6
SHI46760 Sapria himalayana HOM05D006825 ORTHO05D008510 3.0e-11 71.2 54 63.0
PSO675G9026 Papaver somniferum HOM05D006825 ORTHO05D008510 8.8e-11 69.7 43 69.8
Pp3c17_24030 Physcomitrium patens HOM05D006825 ORTHO05D008510 1.5e-10 68.9 47 57.4
arahy.Tifrunner.gnm1.ann1.89Z5DT Arachis hypogaea HOM05D006825 ORTHO05D008510 6.3e-09 63.5 31 80.6
MBI02_g07022_MAGBIO Magnolia biondii HOM05D006825 ORTHO05D008510 3.1e-08 61.2 31 77.4


User provided reference genes

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