Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 0.0e+00 1956.0 979 100.0
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 0.0e+00 1350.1 993 70.6
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 0.0e+00 1261.5 1016 67.4
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 0.0e+00 1090.5 1032 56.4
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 4.3e-309 1064.7 1038 56.6
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.6e-308 1062.8 1032 55.5
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 3.1e-299 1031.9 1057 54.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.0e-294 1016.9 1046 53.1
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 3.0e-294 1015.4 1032 53.8
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 5.8e-290 1001.1 1039 51.8
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 7.1e-288 994.2 1076 51.6
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 6.0e-287 991.1 1040 52.2
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 1.3e-286 989.9 1027 52.8
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.0e-286 988.8 1034 52.8
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.5e-285 986.5 1036 52.6
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 1.6e-284 983.0 1031 53.1
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 2.8e-284 982.2 1035 52.9
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 3.4e-282 975.3 1046 52.1
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 1.0e-281 973.8 1046 51.6
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 3.8e-281 971.8 1044 51.0
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 1.2e-279 966.8 1212 47.4
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 3.9e-278 961.8 1043 50.2
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.5e-277 959.9 1041 51.4
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 2.8e-276 955.7 1032 51.6
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.4e-275 953.4 1028 51.9
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 6.5e-273 944.5 1044 51.8
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 4.2e-272 941.8 1036 50.5
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 1.2e-271 940.3 1034 51.6
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 2.7e-271 939.1 1041 50.5
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 3.0e-270 935.6 1028 50.7
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 8.7e-270 934.1 1033 50.8
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 2.8e-268 929.1 1043 50.8
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.4e-266 922.2 1032 49.7
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 7.7e-266 921.0 1031 51.0
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 7.7e-266 921.0 1001 50.7
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.2e-264 915.6 1032 49.4
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 7.2e-264 914.4 1007 50.0
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.6e-263 913.3 1129 48.9
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 1.1e-261 907.1 1037 48.8
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 4.3e-261 905.2 1079 47.2
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 5.7e-261 904.8 1115 47.1
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.1e-259 900.6 1010 49.9
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 1.8e-259 899.8 1037 49.5
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 1.7e-257 893.3 1022 49.3
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 5.0e-257 891.7 1098 47.4
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 8.5e-257 891.0 1028 49.7
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 2.7e-255 885.9 1038 48.7
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 7.7e-250 867.8 991 50.9
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 3.2e-248 862.4 1050 47.6
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 4.7e-247 858.6 1044 47.0
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 6.1e-247 858.2 1042 47.6
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 5.2e-246 855.1 897 53.4
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 7.5e-245 851.3 1043 47.2
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 4.8e-244 848.6 1036 47.3
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 4.8e-244 848.6 1015 46.8
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.4e-243 847.0 1013 47.1
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 1.8e-243 846.7 1147 44.3
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 5.3e-243 845.1 1098 45.8
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 3.5e-242 842.4 1053 47.3
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 6.1e-239 831.6 1048 46.9
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 4.0e-238 828.9 1046 47.1
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 5.2e-238 828.6 1040 46.2
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 1.2e-237 827.4 1067 46.1
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 8.3e-236 821.2 1056 46.4
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 7.0e-235 818.1 1043 46.4
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 1.3e-233 813.9 905 50.7
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 2.5e-232 809.7 1038 46.9
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.2e-231 807.4 1008 46.5
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.6e-231 807.0 1060 45.2
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 3.6e-231 805.8 1044 44.1
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 3.1e-227 792.7 835 50.9
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 9.2e-227 791.2 1042 45.0
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 5.9e-226 788.5 1014 45.5
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 4.9e-220 768.8 1011 45.5
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 3.0e-217 759.6 890 49.6
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 4.3e-216 755.7 1008 44.6
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 2.6e-213 746.5 1037 43.7
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 3.5e-210 736.1 1059 42.1
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 1.8e-206 723.8 1039 42.9
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 3.6e-191 672.9 966 43.3
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 4.4e-189 666.0 1010 42.7
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 6.4e-188 662.1 762 49.5
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 5.4e-187 659.1 824 45.1
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 6.6e-185 652.1 545 63.9
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 6.4e-180 635.6 747 49.1
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 3.9e-177 626.3 1087 38.1
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 1.1e-176 624.8 681 51.1
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 4.0e-174 616.3 751 48.2
Sopen01g030190 Solanum pennellii HOM05D001245 ORTHO05D004475 1.4e-166 591.3 718 47.4
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 1.8e-166 590.9 975 40.3
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 2.3e-161 573.9 723 46.1
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 7.9e-154 548.9 884 41.1
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 7.9e-154 548.9 641 49.0
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.3e-143 515.0 904 38.7
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 4.5e-133 479.9 1191 30.3
ATR0561G228 Amborella trichopoda HOM05D001245 ORTHO05D004475 2.9e-132 477.2 718 41.8
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.4e-121 441.8 1089 30.8
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-118 431.8 642 39.9
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 2.7e-117 427.6 519 46.1
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.3e-116 425.2 658 40.3
CAN.G410.39 Capsicum annuum HOM05D001245 ORTHO05D004475 3.4e-112 410.6 455 50.1
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 3.1e-97 360.9 309 59.2
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 2.0e-93 348.2 224 74.1
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 1.1e-91 342.4 280 61.8
CsaV3_4G028030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 9.5e-91 339.3 376 49.5
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 5.2e-89 333.6 283 60.4
Sc26g0002960 Simmondsia chinensis HOM05D001245 ORTHO05D004475 3.4e-88 330.9 364 51.6
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 8.3e-87 326.2 280 58.9
CDE02G2376 Ceratophyllum demersum HOM05D001245 ORTHO05D004475 9.2e-86 322.8 393 46.3
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 1.4e-81 308.9 989 27.6
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 3.4e-80 304.3 401 47.9
Dinv14684 Davidia involucrata HOM05D001245 ORTHO05D004475 7.3e-75 286.6 308 49.7
BcaB04g19399 Brassica carinata HOM05D001245 ORTHO05D004475 2.8e-74 284.6 430 41.4
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 9.0e-73 279.6 222 60.4
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 2.9e-71 274.6 232 59.5
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.9e-71 273.9 213 63.8
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 4.2e-70 270.8 211 61.1
HPP92_027721 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.5e-67 262.3 337 45.7
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 3.3e-67 261.2 901 25.1
Hma1.2p1_1887F.1_g306530 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 2.5e-59 235.0 432 38.4
CsaV3_UNG113870 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-55 222.6 164 61.0
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.6e-51 207.2 259 44.4
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 2.5e-46 191.8 192 51.6
CsaV3_UNG142080 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.1e-45 188.7 155 56.1
CsaV3_4G038030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.7e-45 188.3 154 56.5
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.9e-45 186.8 155 63.9
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-44 184.5 142 59.2
SEGI_12378 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 8.7e-44 183.3 416 32.5
CsaV3_UNG169310 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-43 183.0 379 35.9
Hma1.2p1_0014F.1_g010190 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 2.5e-43 181.8 432 33.8
Dinv14683 Davidia involucrata HOM05D001245 ORTHO05D004475 5.3e-41 174.1 137 67.9
CsaV3_1G017340 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-35 156.0 123 57.7
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.4e-35 153.7 101 77.2
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.2e-34 152.1 101 76.2
CsaV3_UNG123970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.7e-34 151.4 98 66.3
CsaV3_UNG178370 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.4e-33 148.7 97 64.9
CsaV3_UNG070580 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.3e-33 147.5 97 64.9
CsaV3_UNG082660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.3e-33 147.5 97 64.9
CsaV3_UNG098730 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-32 146.0 97 64.9
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.5e-32 144.4 118 66.1
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 2.2e-31 142.1 130 53.8
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 1.6e-29 136.0 743 23.1
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 5.7e-27 127.5 304 32.9
Actinidia29491 Actinidia chinensis HOM05D001245 ORTHO05D004475 2.0e-24 119.0 182 44.0
CsaV3_2G000050 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.5e-23 113.6 83 61.4
CsaV3_UNG169320 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.5e-23 113.6 83 61.4
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 5.2e-20 104.4 165 35.8
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 9.7e-19 100.1 670 22.2
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 9.7e-19 100.1 96 52.1
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.0e-16 92.4 59 62.7
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.6e-16 92.0 59 64.4
Medtr7g091020 Medicago truncatula HOM05D016289 ORTHO05D019268 1.0e-15 90.1 72 55.6
CsaV3_UNG224680 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.7e-13 81.3 98 43.9
CsaV3_5G019970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.1e-13 80.9 77 42.9
Mapoly0010s0152 Marchantia polymorpha HOM05D004995 ORTHO05D006034 8.0e-13 80.5 329 23.7
Duzib116G0160 Durio zibethinus HOM05D001245 ORTHO05D004475 1.8e-12 79.3 86 51.2
CsaV3_UNG224640 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.8e-12 77.0 98 42.9
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.2e-11 76.6 58 74.1
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 3.3e-11 75.1 47 63.8
PRCOL_00000968 Prasinoderma coloniale HOM05D001245 ORTHO05D004475 3.7e-10 71.6 522 22.6
CsaV3_5G018960 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.3e-09 67.8 49 59.2
SHI09213 Sapria himalayana HOM05D001245 ORTHO05D004475 1.2e-08 66.6 84 46.4
BolC2t09478H Brassica oleracea HOM05D001245 ORTHO05D004475 2.0e-08 65.9 54 66.7
C02p34480 Brassica napus HOM05D001245 ORTHO05D004475 4.5e-08 64.7 37 83.8
Cfa023667 Carpinus fangiana HOM05D001245 ORTHO05D004475 7.7e-08 63.9 182 27.5
Ciclev10003608m.g Citrus clementina HOM05D001245 ORTHO05D004475 1.0e-07 63.5 52 65.4
CsaV3_5G018970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.0e-07 63.5 56 51.8
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 1.5e-06 59.7 153 27.5
Medtr7g091010 Medicago truncatula HOM05D001245 ORTHO05D004475 1.9e-06 59.3 48 56.2
SEGI_38871 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 2.5e-06 58.9 145 31.7
Psat0s9845g0040 Pisum sativum HOM05D001245 ORTHO05D004475 5.5e-06 57.8 257 27.6


User provided reference genes

Program Settings