Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0040461 Helianthus annuus HOM05D001606 ORTHO05D002266 3.4e-43 177.9 91 100.0
Lj4g0005316 Lotus japonicus HOM05D001606 ORTHO05D002266 5.7e-14 80.9 88 53.4
Sabra13G0029600 Salix brachista HOM05D001606 ORTHO05D002266 5.7e-14 80.9 88 53.4
Lalb_Chr18g0048101 Lupinus albus HOM05D001606 ORTHO05D002266 7.4e-14 80.5 88 53.4
Cpa.g.sc504.4 Carica papaya HOM05D001606 ORTHO05D002266 9.7e-14 80.1 88 53.4
HanXRQChr09g0250321 Helianthus annuus HOM05D001606 ORTHO05D002266 9.7e-14 80.1 88 55.7
ECA234G2978 Erigeron canadensis HOM05D001606 ORTHO05D002266 1.3e-13 79.7 88 54.5
HanXRQChr12g0381531 Helianthus annuus HOM05D001606 ORTHO05D002266 1.3e-13 79.7 88 55.7
Lj7C484T1 Lonicera japonica HOM05D001606 ORTHO05D002266 1.3e-13 79.7 88 53.4
Ca_30544_v3 Cicer arietinum L. HOM05D001606 ORTHO05D002266 1.7e-13 79.3 88 52.3
ECA247G1323 Erigeron canadensis HOM05D000069 ORTHO05D002266 1.7e-13 79.3 88 54.5
Migut.L01517 Erythranthe guttata HOM05D001606 ORTHO05D002266 1.7e-13 79.3 88 53.4
Glyma.04G122100 Glycine max HOM05D001606 ORTHO05D002266 1.7e-13 79.3 88 52.3
Glyma.06G309500 Glycine max HOM05D001606 ORTHO05D002266 1.7e-13 79.3 88 52.3
Gorai.012G097700 Gossypium raimondii HOM05D001606 ORTHO05D002266 1.7e-13 79.3 88 54.5
VMungo1080G1502 Vigna mungo HOM05D001606 ORTHO05D002266 1.7e-13 79.3 88 52.3
Potri.013G029300 Populus trichocarpa HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 52.3
Rhsim07G0177200 Rhododendron simsii HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 52.3
Solyc01g111810.3 Solanum lycopersicum HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 53.4
Solyc04g056530.2 Solanum lycopersicum HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 53.4
Sopen01g053850 Solanum pennellii HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 53.4
Sopen04g025460 Solanum pennellii HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 53.4
PGSC0003DMG400010517 Solanum tuberosum HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 53.4
PGSC0003DMG400018627 Solanum tuberosum HOM05D001606 ORTHO05D002266 2.2e-13 79.0 88 53.4
Eucgr.B01772 Eucalyptus grandis HOM05D001606 ORTHO05D002266 2.8e-13 78.6 88 52.3
Gohir.A13G100100 Gossypium hirsutum HOM05D001606 ORTHO05D002266 2.8e-13 78.6 88 53.4
Gohir.D04G087650 Gossypium hirsutum HOM05D001606 ORTHO05D002266 2.8e-13 78.6 88 54.5
Gohir.D13G103500 Gossypium hirsutum HOM05D001606 ORTHO05D002266 2.8e-13 78.6 88 53.4
Gorai.013G116100 Gossypium raimondii HOM05D001606 ORTHO05D002266 2.8e-13 78.6 88 53.4
arahy.Tifrunner.gnm1.ann1.P33UNN Arachis hypogaea HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 51.1
arahy.Tifrunner.gnm1.ann1.P3NF1H Arachis hypogaea HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 51.1
arahy.Tifrunner.gnm1.ann1.YZU4Z1 Arachis hypogaea HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 51.1
Cc02_g32860 Coffea canephora HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 53.4
Lj3g0023237 Lotus japonicus HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 51.1
Medtr3g012540 Medicago truncatula HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 52.3
QL02p102113 Quercus lobata HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 53.4
QL02p102636 Quercus lobata HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 53.4
TPR.G18593 Trifolium pratense HOM05D001606 ORTHO05D002266 3.7e-13 78.2 88 52.3
CAN.G538.1 Capsicum annuum HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
DCAR_003765 Daucus carota HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
DCAR_015024 Daucus carota HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
Lsat_1_v5_gn_3_3420 Lactuca sativa HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 53.4
Nitab4.5_0000083g0080 Nicotiana tabacum HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
Nitab4.5_0001537g0040 Nicotiana tabacum HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
Oeu026643.1 Olea europaea HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
Peaxi162Scf00084g01014 Petunia axillaris HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
vmacro05055 Vaccinium macrocarpon HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 52.3
GSVIVG01021982001 Vitis vinifera HOM05D001606 ORTHO05D002266 4.8e-13 77.8 88 54.5
Psat5g223440 Pisum sativum HOM05D001606 ORTHO05D002266 6.3e-13 77.4 88 52.3
TWI56G0887 Tripterygium wilfordii HOM05D001606 ORTHO05D002266 6.3e-13 77.4 88 51.1
CiPaw.07G011900 Carya illinoinensis HOM05D001606 ORTHO05D002266 1.1e-12 76.6 88 52.3
Hma1.2p1_0332F.1_g128030 Hydrangea macrophylla HOM05D001606 ORTHO05D002266 1.1e-12 76.6 88 52.3
Phvul.006G019000 Phaseolus vulgaris HOM05D001606 ORTHO05D002266 1.1e-12 76.6 88 51.1
Dinv01285 Davidia involucrata HOM05D001606 ORTHO05D002266 1.4e-12 76.3 88 53.4
Phvul.005G016700 Phaseolus vulgaris HOM05D001606 ORTHO05D002266 1.4e-12 76.3 88 50.0
Atru.chr2.601 Acer truncatum HOM05D001606 ORTHO05D002266 1.8e-12 75.9 88 53.4
CSS0023690 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 1.8e-12 75.9 88 51.1
CSS0040780 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 1.8e-12 75.9 88 51.1
SalBow1G4714 Salvia bowleyana HOM05D001606 ORTHO05D002266 1.8e-12 75.9 88 52.3
ATR0051G029 Amborella trichopoda HOM05D001606 ORTHO05D002266 2.4e-12 75.5 88 51.1
Cfa006511 Carpinus fangiana HOM05D001606 ORTHO05D002266 2.4e-12 75.5 88 51.1
Haze_04275 Corylus avellana HOM05D001606 ORTHO05D002266 2.4e-12 75.5 88 51.1
MELO3C004335.2 Cucumis melo HOM05D001606 ORTHO05D002266 2.4e-12 75.5 88 51.1
CsaV3_2G004560 Cucumis sativus L. HOM05D001606 ORTHO05D002266 2.4e-12 75.5 88 51.1
Nn4g26063 Nelumbo nucifera HOM05D001606 ORTHO05D002266 2.4e-12 75.5 88 51.1
PGR102G1448 Punica granatum HOM05D001606 ORTHO05D002266 2.4e-12 75.5 88 48.9
EL10Ac4g09264 Beta vulgaris HOM05D001606 ORTHO05D002266 3.1e-12 75.1 88 52.3
Manes.14G142600 Manihot esculenta HOM05D001606 ORTHO05D002266 3.1e-12 75.1 88 52.3
Manes.14G143216 Manihot esculenta HOM05D001606 ORTHO05D002266 3.1e-12 75.1 88 52.3
Thecc.05G250700 Theobroma cacao HOM05D001606 ORTHO05D002266 3.1e-12 75.1 88 51.1
MSTRG.19495 Avicennia marina HOM05D001606 ORTHO05D002266 4.1e-12 74.7 88 52.3
MBI05_g34023_MAGBIO Magnolia biondii HOM05D001606 ORTHO05D002266 4.1e-12 74.7 88 52.3
MBI05_g40672_MAGBIO Magnolia biondii HOM05D001606 ORTHO05D002266 4.1e-12 74.7 88 52.3
TAR362G1126 Trochodendron aralioides HOM05D001606 ORTHO05D002266 4.1e-12 74.7 88 51.1
MD04G1213500 Malus domestica HOM05D001606 ORTHO05D002266 5.3e-12 74.3 88 51.1
MD12G1228600 Malus domestica HOM05D001606 ORTHO05D002266 5.3e-12 74.3 88 51.1
Aqoxy2G03145 Aquilegia oxysepala HOM05D001606 ORTHO05D002266 6.9e-12 73.9 88 50.0
Aa31sc17G200 Aethionema arabicum HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
BcaC05g24743 Brassica carinata HOM05D001405 ORTHO05D002266 9.1e-12 73.6 88 48.9
BcaC07g41922 Brassica carinata HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
A06p05730 Brassica napus HOM05D001405 ORTHO05D002266 9.1e-12 73.6 88 48.9
A09p65730 Brassica napus HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
C08p49800 Brassica napus HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
BolC8t52507H Brassica oleracea HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
BraA06t23784Z Brassica rapa HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
BraA09t41916Z Brassica rapa HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
CARHR008770 Cardamine hirsuta HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
Thhalv10001765m.g Eutrema salsugineum HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
Thhalv10008888m.g Eutrema salsugineum HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
Gohir.A08G116200 Gossypium hirsutum HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 51.1
Sp1g07490 Schrenkiella parvula HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 48.9
unitig_699.g19292 Utricularia gibba HOM05D001606 ORTHO05D002266 9.1e-12 73.6 88 50.0
C05p06920 Brassica napus HOM05D001405 ORTHO05D002266 1.2e-11 73.2 88 48.9
BolC5t29450H Brassica oleracea HOM05D001606 ORTHO05D002266 1.2e-11 73.2 88 48.9
CSS0036212 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 1.2e-11 73.2 88 48.9
Duzib106G0812 Durio zibethinus HOM05D001606 ORTHO05D002266 1.2e-11 73.2 88 51.1
Gohir.D08G137100 Gossypium hirsutum HOM05D001606 ORTHO05D002266 1.2e-11 73.2 88 51.1
Gorai.004G140300 Gossypium raimondii HOM05D001606 ORTHO05D002266 1.2e-11 73.2 88 51.1
Sed0013394 Sechium edule HOM05D001606 ORTHO05D002266 1.2e-11 73.2 88 51.1
ClCG09G008340 Citrullus lanatus HOM05D001772 ORTHO05D002266 1.5e-11 72.8 88 50.0
Ciclev10002594m.g Citrus clementina HOM05D001606 ORTHO05D002266 1.5e-11 72.8 88 51.1
FvH4_6g04770 Fragaria vesca HOM05D001606 ORTHO05D002266 1.5e-11 72.8 88 50.0
FAN05G1509 Fragaria x ananassa HOM05D000160 ORTHO05D002266 1.5e-11 72.8 88 50.0
FAN05G5164 Fragaria x ananassa HOM05D001606 ORTHO05D002266 1.5e-11 72.8 88 50.0
FAN09G2939 Fragaria x ananassa HOM05D001606 ORTHO05D002266 1.5e-11 72.8 88 50.0
FAN09G4132 Fragaria x ananassa HOM05D001606 ORTHO05D002266 1.5e-11 72.8 88 50.0
FAN14G1209 Fragaria x ananassa HOM05D001606 ORTHO05D002266 1.5e-11 72.8 88 50.0
RcHm_v2.0_Chr3g0453221 Rosa chinensis HOM05D001606 ORTHO05D002266 1.5e-11 72.8 88 50.0
AL1G19280 Arabidopsis lyrata HOM05D001606 ORTHO05D002266 2.0e-11 72.4 88 47.7
AT1G08845 Arabidopsis thaliana HOM05D001606 ORTHO05D002266 2.0e-11 72.4 88 47.7
Carub.0001s0820 Capsella rubella HOM05D001606 ORTHO05D002266 2.0e-11 72.4 88 47.7
Os10g0559900 Oryza sativa ssp. japonica HOM05D001606 ORTHO05D002266 2.6e-11 72.0 88 48.9
Sc16g0008240 Simmondsia chinensis HOM05D001606 ORTHO05D002266 2.6e-11 72.0 88 51.1
Ciclev10003435m.g Citrus clementina HOM05D001606 ORTHO05D002266 3.4e-11 71.6 86 51.2
THA.LOC104808239 Tarenaya hassleriana HOM05D001606 ORTHO05D002266 3.4e-11 71.6 88 46.6
AUR62000908 Chenopodium quinoa HOM05D001606 ORTHO05D002266 4.5e-11 71.2 88 48.9
AUR62005060 Chenopodium quinoa HOM05D001606 ORTHO05D002266 4.5e-11 71.2 88 48.9
Prupe.6G333700 Prunus persica HOM05D001606 ORTHO05D002266 4.5e-11 71.2 88 50.0
SEGI_04328 Sequoiadendron giganteum HOM05D001606 ORTHO05D002266 5.9e-11 70.9 88 48.9
SEGI_36243 Sequoiadendron giganteum HOM05D001606 ORTHO05D002266 5.9e-11 70.9 88 48.9
CDE11G0844 Ceratophyllum demersum HOM05D001606 ORTHO05D002266 7.7e-11 70.5 88 50.0
Hund21670 Selenicereus undatus HOM05D001606 ORTHO05D002266 7.7e-11 70.5 86 50.0
CANSAT54G1347 Cannabis sativa HOM05D001606 ORTHO05D002266 2.2e-10 68.9 88 46.6
Gohir.D10G011901 Gossypium hirsutum HOM05D001606 ORTHO05D002266 2.2e-10 68.9 85 49.4
SHI18251 Sapria himalayana HOM05D001606 ORTHO05D002266 2.2e-10 68.9 88 48.9
Zm00001eb023240 Zea mays HOM05D001606 ORTHO05D002266 5.0e-10 67.8 88 45.5
PSO210G3774 Papaver somniferum HOM05D001606 ORTHO05D002266 8.5e-10 67.0 88 45.5
PSO447G0116 Papaver somniferum HOM05D001606 ORTHO05D002266 8.5e-10 67.0 88 45.5
COL.COLO4_36074 Corchorus olitorius HOM05D001606 ORTHO05D002266 1.1e-09 66.6 89 50.6
Gohir.A07G092800 Gossypium hirsutum HOM05D001606 ORTHO05D002266 1.9e-09 65.9 83 49.4
Gohir.A08G206000 Gossypium hirsutum HOM05D001606 ORTHO05D002266 1.9e-09 65.9 83 49.4
Gohir.D13G075800 Gossypium hirsutum HOM05D001606 ORTHO05D002266 1.9e-09 65.9 83 49.4
CSS0007709 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 7.2e-09 63.9 50 66.0
CAN.G339.45 Capsicum annuum HOM05D001606 ORTHO05D002266 7.2e-09 63.9 68 54.4
CSS0024655 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D002266 4.7e-08 61.2 52 61.5
Gohir.D02G102566 Gossypium hirsutum HOM05D001606 ORTHO05D002266 1.0e-07 60.1 50 66.0
Oeu054837.1 Olea europaea HOM05D001606 ORTHO05D002266 1.4e-07 59.7 52 61.5
Eucgr.L00161 Eucalyptus grandis HOM05D001606 ORTHO05D002266 2.3e-07 58.9 88 43.2
HPP92_012436 Vanilla planifolia HOM05D001606 ORTHO05D002266 3.9e-07 58.2 52 59.6
HPP92_012532 Vanilla planifolia HOM05D001606 ORTHO05D002266 3.9e-07 58.2 52 59.6
Ca_14235_v3 Cicer arietinum L. HOM05D001606 ORTHO05D002266 5.1e-07 57.8 52 57.7
Lalb_Chr15g0079181 Lupinus albus HOM05D001606 ORTHO05D002266 2.0e-06 55.8 52 55.8
Sopen04g022320 Solanum pennellii HOM05D001606 ORTHO05D002266 2.0e-06 55.8 50 62.0
Solyc04g051030.1 Solanum lycopersicum HOM05D001606 ORTHO05D002266 7.4e-06 53.9 52 57.7


User provided reference genes

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