Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 6.6e-216 753.8 398 100.0
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 2.7e-145 519.2 346 74.6
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 8.5e-123 444.5 343 64.1
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 3.2e-122 442.6 308 70.8
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 2.7e-121 439.5 341 66.6
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 8.0e-121 438.0 297 71.7
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 1.8e-120 436.8 295 69.2
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 1.8e-120 436.8 353 64.6
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 1.2e-119 434.1 294 71.4
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 2.6e-119 433.0 322 67.7
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 3.4e-119 432.6 345 63.8
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 4.4e-119 432.2 317 68.5
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.3e-118 430.6 331 64.4
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 3.7e-118 429.1 316 68.0
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 4.8e-118 428.7 297 70.0
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 4.8e-118 428.7 320 67.8
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 8.3e-118 427.9 321 65.7
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 4.1e-117 425.6 296 68.9
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 4.1e-117 425.6 333 67.0
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 7.0e-117 424.9 294 69.4
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 5.9e-116 421.8 323 64.4
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 1.7e-115 420.2 339 64.0
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 1.7e-115 420.2 339 64.0
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 1.7e-115 420.2 322 66.5
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 2.9e-115 419.5 299 67.9
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 5.0e-115 418.7 291 69.8
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 6.6e-115 418.3 339 63.7
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.9e-114 416.8 331 63.1
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 5.5e-114 415.2 293 66.6
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 9.5e-114 414.5 349 60.7
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 1.2e-113 414.1 298 66.4
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 3.6e-113 412.5 367 58.9
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 3.6e-113 412.5 316 64.6
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 4.7e-113 412.1 364 58.5
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 6.1e-113 411.8 349 62.2
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 6.1e-113 411.8 299 69.6
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 6.1e-113 411.8 299 69.6
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 1.0e-112 411.0 330 59.7
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.8e-112 410.2 282 69.5
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 3.0e-112 409.5 328 62.2
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 5.2e-112 408.7 289 66.8
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 8.9e-112 407.9 305 65.6
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 8.9e-112 407.9 323 64.1
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 8.9e-112 407.9 250 76.8
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 8.9e-112 407.9 350 63.4
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 1.2e-111 407.5 304 64.8
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 5.7e-111 405.2 324 62.3
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 5.7e-111 405.2 324 62.3
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 5.7e-111 405.2 327 63.9
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.3e-110 404.1 324 62.0
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.3e-110 404.1 339 61.1
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 1.3e-110 404.1 330 60.3
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 1.7e-110 403.7 350 60.6
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.7e-110 402.5 360 59.2
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 4.9e-110 402.1 321 63.2
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 1.4e-109 400.6 326 62.3
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 2.4e-109 399.8 358 58.7
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 4.1e-109 399.1 299 64.9
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 5.4e-109 398.7 310 62.3
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 5.4e-109 398.7 299 64.2
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 5.4e-109 398.7 294 65.0
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 7.0e-109 398.3 295 63.4
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 7.0e-109 398.3 335 60.6
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 1.2e-108 397.5 331 62.2
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 1.6e-108 397.1 335 60.3
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 1.6e-108 397.1 333 63.1
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 1.6e-108 397.1 333 61.0
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 5.9e-108 395.2 326 60.7
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 7.8e-108 394.8 321 62.0
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 1.3e-107 394.0 319 62.7
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 2.3e-107 393.3 319 62.4
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 2.3e-107 393.3 319 62.4
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 2.3e-107 393.3 319 62.4
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 2.9e-107 392.9 327 61.2
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 5.0e-107 392.1 319 62.1
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 6.6e-107 391.7 333 60.7
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 8.6e-107 391.3 331 59.8
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 1.1e-106 391.0 325 62.2
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 1.5e-106 390.6 311 62.7
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 3.3e-106 389.4 320 61.9
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 9.5e-106 387.9 373 57.4
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 1.6e-105 387.1 282 67.0
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 2.8e-105 386.3 363 54.5
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 4.7e-105 385.6 343 57.1
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 3.1e-104 382.9 373 54.7
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 8.9e-104 381.3 368 54.1
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 1.9e-101 373.6 317 58.7
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 2.4e-101 373.2 360 55.3
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 1.7e-99 367.1 296 60.5
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 1.8e-88 330.5 276 61.6
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 4.0e-88 329.3 347 51.0
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 7.8e-84 315.1 305 52.5
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 1.3e-83 314.3 355 49.9
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 5.6e-82 308.9 334 49.1
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 4.9e-78 295.8 248 61.7
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 2.4e-77 293.5 215 67.0
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.2e-76 291.2 199 69.3
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.6e-76 290.8 199 68.8
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 3.5e-76 289.7 318 48.4
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 1.9e-74 283.9 318 49.4
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 6.6e-67 258.8 368 42.7
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 1.1e-66 258.1 163 71.8
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 5.6e-66 255.8 249 52.6
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 2.7e-52 210.3 263 43.3
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 2.3e-51 207.2 155 63.2
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 3.0e-51 206.8 297 38.0
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 3.1e-48 196.8 180 55.6
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 4.6e-44 183.0 185 51.4
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 6.3e-41 172.6 110 71.8
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.4e-35 154.8 124 63.7
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 5.1e-35 152.9 209 42.6
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 6.7e-35 152.5 209 42.1
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 6.7e-27 125.9 144 47.2
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 1.5e-26 124.8 199 38.7
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 1.4e-24 118.2 92 65.2
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 1.2e-20 105.1 98 53.1
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 2.1e-20 104.4 94 56.4
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 8.0e-20 102.4 94 54.3
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 1.1e-18 98.6 104 49.0
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 1.7e-17 94.7 80 58.8
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 1.8e-16 91.3 76 53.9
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 2.4e-16 90.9 103 44.7
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 5.3e-16 89.7 109 46.8
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 2.2e-14 84.3 60 65.0
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 1.1e-13 82.0 300 27.0
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 3.2e-13 80.5 58 63.8
SGA_v2.0_scaffold52G19058 Striga asiatica HOM05D004302 ORTHO05D004939 1.6e-12 78.2 288 25.7
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 6.1e-12 76.3 303 25.1
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.4e-11 75.1 303 25.1
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 1.8e-11 74.7 138 41.3
DCAR_025461 Daucus carota HOM05D004302 ORTHO05D004939 3.0e-11 73.9 288 27.4
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 3.0e-11 73.9 303 27.4
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 8.8e-11 72.4 310 25.2
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 1.2e-10 72.0 274 28.1
MD09G1076600 Malus domestica HOM05D004302 ORTHO05D004939 9.8e-10 68.9 287 27.2
Medtr7g017400 Medicago truncatula HOM05D004302 ORTHO05D004939 9.8e-10 68.9 274 27.4
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 2.2e-09 67.8 310 27.1
Psat3g208160 Pisum sativum HOM05D004302 ORTHO05D004939 4.8e-09 66.6 274 25.9
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 1.1e-08 65.5 307 25.7
Pp3c14_15770 Physcomitrium patens HOM05D003005 ORTHO05D004939 2.7e-07 60.8 308 22.7
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.3e-06 58.5 323 22.6
Sc20g0003450 Simmondsia chinensis HOM05D006114 ORTHO05D007609 2.2e-06 57.8 45 60.0


User provided reference genes

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