Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0039721 Helianthus annuus HOM05D002071 ORTHO05D002109 6.4e-79 297.4 152 100.0
HanXRQChr11g0335051 Helianthus annuus HOM05D002071 ORTHO05D002109 1.5e-48 196.4 104 96.2
ECA236G3752 Erigeron canadensis HOM05D002071 ORTHO05D002109 1.6e-37 159.8 118 73.7
Lsat_1_v5_gn_7_111701 Lactuca sativa HOM05D002071 ORTHO05D002109 3.7e-34 148.7 97 81.4
SGA_v2.0_scaffold7G03596 Striga asiatica HOM05D002071 ORTHO05D002109 1.3e-26 123.6 110 60.9
Prupe.4G138000 Prunus persica HOM05D002071 ORTHO05D002109 3.7e-26 122.1 111 61.3
Dinv19606 Davidia involucrata HOM05D000604 ORTHO05D000990 6.3e-26 121.3 121 59.5
Nitab4.5_0000611g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.1e-25 120.6 122 55.7
Nitab4.5_0008429g0020 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.8e-25 119.8 122 54.9
TAR626G1582 Trochodendron aralioides HOM05D002071 ORTHO05D002109 2.7e-24 115.9 120 52.5
Potri.005G097600 Populus trichocarpa HOM05D002071 ORTHO05D002109 4.5e-24 115.2 113 58.4
MSTRG.16107 Avicennia marina HOM05D002071 ORTHO05D002109 5.9e-24 114.8 117 53.0
Ciclev10005358m.g Citrus clementina HOM05D002071 ORTHO05D002109 5.9e-24 114.8 107 57.9
arahy.Tifrunner.gnm1.ann1.L1XN9H Arachis hypogaea HOM05D002071 ORTHO05D002109 5.0e-23 111.7 111 53.2
arahy.Tifrunner.gnm1.ann1.WXZ4D6 Arachis hypogaea HOM05D002071 ORTHO05D002109 5.0e-23 111.7 111 53.2
TAR629G2653 Trochodendron aralioides HOM05D002071 ORTHO05D002109 1.2e-21 107.1 127 51.2
Cc05_g16230 Coffea canephora HOM05D002071 ORTHO05D002109 2.1e-21 106.3 122 51.6
Oeu051671.4 Olea europaea HOM05D002071 ORTHO05D002109 2.8e-21 105.9 107 59.8
Actinidia07364 Actinidia chinensis HOM05D002071 ORTHO05D002109 6.1e-21 104.8 111 55.0
PGSC0003DMG400011241 Solanum tuberosum HOM05D002071 ORTHO05D002109 6.1e-21 104.8 113 53.1
THA.LOC104808126 Tarenaya hassleriana HOM05D002071 ORTHO05D002109 6.1e-21 104.8 120 53.3
Nitab4.5_0002633g0030 Nicotiana tabacum HOM05D002071 ORTHO05D002109 1.8e-20 103.2 119 52.9
Peaxi162Scf00452g00621 Petunia axillaris HOM05D002071 ORTHO05D002109 2.3e-20 102.8 122 50.8
Sabra05G0079900 Salix brachista HOM05D002071 ORTHO05D002109 2.3e-20 102.8 111 51.4
Nitab4.5_0002321g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 3.0e-20 102.4 119 52.1
Manes.06G173700 Manihot esculenta HOM05D002071 ORTHO05D002109 5.2e-20 101.7 120 50.8
Sopen10g001550 Solanum pennellii HOM05D002071 ORTHO05D002109 5.2e-20 101.7 111 53.2
Solyc10g005580.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 8.8e-20 100.9 113 52.2
Lj3g0001439 Lotus japonicus HOM05D002071 ORTHO05D002109 5.7e-19 98.2 110 50.0
Medtr0260s0030 Medicago truncatula HOM05D002071 ORTHO05D002109 1.3e-18 97.1 111 49.5
Carub.0001s1628 Capsella rubella HOM05D002071 ORTHO05D002109 2.2e-18 96.3 120 50.8
QL04p066911 Quercus lobata HOM05D002071 ORTHO05D002109 2.2e-18 96.3 106 54.7
SalBow8G1388 Salvia bowleyana HOM05D002071 ORTHO05D002109 2.8e-18 95.9 109 52.3
Phvul.011G174200 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 6.3e-18 94.7 111 45.9
Hund12438 Selenicereus undatus HOM05D002071 ORTHO05D002109 6.3e-18 94.7 120 49.2
Actinidia12779 Actinidia chinensis HOM05D002071 ORTHO05D002109 8.3e-18 94.4 120 48.3
Hma1.2p1_0151F.1_g067560 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 8.3e-18 94.4 115 52.2
Hma1.2p1_0637F.1_g193390 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 8.3e-18 94.4 115 52.2
AL1G28690 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 1.4e-17 93.6 120 50.0
Potri.007G066900 Populus trichocarpa HOM05D002071 ORTHO05D002109 2.4e-17 92.8 120 46.7
Actinidia35428 Actinidia chinensis HOM05D002071 ORTHO05D002109 4.1e-17 92.0 119 45.4
Actinidia37119 Actinidia chinensis HOM05D002071 ORTHO05D002109 4.1e-17 92.0 119 47.1
CAN.G492.71 Capsicum annuum HOM05D002071 ORTHO05D002109 4.1e-17 92.0 114 50.9
Dinv42502 Davidia involucrata HOM05D002071 ORTHO05D002109 9.2e-17 90.9 113 48.7
Thhalv10008187m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 1.2e-16 90.5 113 50.4
Migut.M01546 Erythranthe guttata HOM05D002071 ORTHO05D002109 2.0e-16 89.7 112 47.3
CiPaw.11G065000 Carya illinoinensis HOM05D002071 ORTHO05D002109 2.7e-16 89.4 92 55.4
Glyma.15G212200 Glycine max HOM05D002071 ORTHO05D002109 2.7e-16 89.4 111 44.1
Thecc.07G160300 Theobroma cacao HOM05D002071 ORTHO05D002109 2.7e-16 89.4 111 47.7
Ca_27015_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 3.5e-16 89.0 111 44.1
DCAR_030853 Daucus carota HOM05D002071 ORTHO05D002109 3.5e-16 89.0 121 48.8
Lalb_Chr01g0007141 Lupinus albus HOM05D002071 ORTHO05D002109 3.5e-16 89.0 111 44.1
Glyma.08G236200 Glycine max HOM05D002071 ORTHO05D002109 4.5e-16 88.6 111 44.1
CSS0010808 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 5.9e-16 88.2 120 47.5
Lalb_Chr19g0133321 Lupinus albus HOM05D002071 ORTHO05D002109 5.9e-16 88.2 111 45.9
Psat4g141000 Pisum sativum HOM05D002071 ORTHO05D002109 5.9e-16 88.2 111 45.9
MSTRG.13072 Avicennia marina HOM05D002071 ORTHO05D002109 7.8e-16 87.8 115 48.7
Nn7g37944 Nelumbo nucifera HOM05D002071 ORTHO05D002109 7.8e-16 87.8 122 45.9
AT1G16520 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 1.7e-15 86.7 116 49.1
MSTRG.7066 Avicennia marina HOM05D002071 ORTHO05D002109 1.7e-15 86.7 139 41.0
QL04p077077 Quercus lobata HOM05D002071 ORTHO05D002109 1.7e-15 86.7 111 48.6
Rhsim04G0005400 Rhododendron simsii HOM05D002071 ORTHO05D002109 1.7e-15 86.7 110 48.2
SGA_v2.0_scaffold1110G53845 Striga asiatica HOM05D002071 ORTHO05D002109 1.7e-15 86.7 95 49.5
Ah.16g106480 Amaranthus hybridus HOM05D002071 ORTHO05D002109 3.8e-15 85.5 123 42.3
EL10Ac2g03284 Beta vulgaris HOM05D002071 ORTHO05D002109 5.0e-15 85.1 117 43.6
Cfa019415 Carpinus fangiana HOM05D002071 ORTHO05D002109 6.6e-15 84.7 111 45.9
COL.COLO4_38371 Corchorus olitorius HOM05D002071 ORTHO05D002109 6.6e-15 84.7 112 45.5
Cpa.g.sc331.4 Carica papaya HOM05D002071 ORTHO05D002109 8.6e-15 84.3 120 47.5
Sed0026955 Sechium edule HOM05D002071 ORTHO05D002109 3.3e-14 82.4 106 50.0
Lj1A907T21 Lonicera japonica HOM05D002071 ORTHO05D002109 5.6e-14 81.6 122 44.3
Sed0010908 Sechium edule HOM05D002071 ORTHO05D002109 7.3e-14 81.3 106 46.2
AUR62040864 Chenopodium quinoa HOM05D002071 ORTHO05D002109 9.5e-14 80.9 117 41.9
Gorai.007G336300 Gossypium raimondii HOM05D002071 ORTHO05D002109 1.2e-13 80.5 120 42.5
CAN.G943.44 Capsicum annuum HOM05D002071 ORTHO05D002109 1.6e-13 80.1 121 43.8
Aqoxy4G00030 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 2.1e-13 79.7 103 47.6
BcaB02g06637 Brassica carinata HOM05D002071 ORTHO05D002109 2.8e-13 79.3 113 46.0
CSS0016057 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 2.8e-13 79.3 120 42.5
CSS0048525 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 2.8e-13 79.3 120 42.5
PGSC0003DMG400022123 Solanum tuberosum HOM05D002071 ORTHO05D002109 3.6e-13 79.0 121 43.8
AUR62026897 Chenopodium quinoa HOM05D002071 ORTHO05D002109 4.7e-13 78.6 117 41.9
Sp5g34190 Schrenkiella parvula HOM05D002071 ORTHO05D002109 4.7e-13 78.6 109 46.8
Gohir.A11G291700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 6.1e-13 78.2 120 41.7
Gohir.D11G300500 Gossypium hirsutum HOM05D002071 ORTHO05D002109 6.1e-13 78.2 120 41.7
Atru.chr1.188 Acer truncatum HOM05D002071 ORTHO05D002109 8.0e-13 77.8 120 43.3
CANSAT80G1043 Cannabis sativa HOM05D002071 ORTHO05D002109 1.0e-12 77.4 111 45.0
GSVIVG01020284001 Vitis vinifera HOM05D002071 ORTHO05D002109 1.0e-12 77.4 121 42.1
A06p12520 Brassica napus HOM05D002071 ORTHO05D002109 1.4e-12 77.0 113 45.1
C05p14780 Brassica napus HOM05D002071 ORTHO05D002109 1.4e-12 77.0 113 45.1
ATR0763G240 Amborella trichopoda HOM05D002071 ORTHO05D002109 1.8e-12 76.6 127 41.7
MBI05_g09168_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 1.8e-12 76.6 120 45.8
BraA06t24415Z Brassica rapa HOM05D002071 ORTHO05D002109 2.3e-12 76.3 113 45.1
Migut.H01684 Erythranthe guttata HOM05D002071 ORTHO05D002109 2.3e-12 76.3 121 46.3
SGA_v2.0_scaffold239G44048 Striga asiatica HOM05D002071 ORTHO05D002109 2.3e-12 76.3 105 50.5
Gohir.A01G095700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 3.0e-12 75.9 120 45.0
RcHm_v2.0_Chr5g0026171 Rosa chinensis HOM05D002071 ORTHO05D002109 3.0e-12 75.9 110 42.7
BolC5t30198H Brassica oleracea HOM05D002071 ORTHO05D002109 4.0e-12 75.5 113 45.1
BcaC05g25558 Brassica carinata HOM05D002071 ORTHO05D002109 5.2e-12 75.1 113 45.1
TWI38G0753 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 1.5e-11 73.6 128 39.1
ClCG02G018560 Citrullus lanatus HOM05D002071 ORTHO05D002109 2.0e-11 73.2 106 47.2
Lalb_Chr03g0031741 Lupinus albus HOM05D002071 ORTHO05D002109 2.0e-11 73.2 111 40.5
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.6e-11 72.8 121 44.6
CsaV3_6G013640 Cucumis sativus L. HOM05D002071 ORTHO05D002109 3.4e-11 72.4 106 47.2
Sc20g0002830 Simmondsia chinensis HOM05D002071 ORTHO05D002109 3.4e-11 72.4 107 42.1
Duzib213G0850 Durio zibethinus HOM05D002071 ORTHO05D002109 9.8e-11 70.9 120 40.8
Zm00001eb218110 Zea mays HOM05D002071 ORTHO05D002109 1.3e-10 70.5 110 40.9
MBI18_g37407_MAGBIO Magnolia biondii HOM05D002071 ORTHO05D002109 2.2e-10 69.7 112 42.0
vmacro09777 Vaccinium macrocarpon HOM05D002071 ORTHO05D002109 2.2e-10 69.7 115 43.5
Zm00001eb052610 Zea mays HOM05D002071 ORTHO05D002109 2.2e-10 69.7 101 42.6
FAN11G0694 Fragaria x ananassa HOM05D002071 ORTHO05D002109 3.7e-10 68.9 111 40.5
Sp1g14690 Schrenkiella parvula HOM05D002071 ORTHO05D002109 4.9e-10 68.6 113 42.5
HanXRQChr03g0067031 Helianthus annuus HOM05D002071 ORTHO05D221583 6.4e-10 68.2 33 93.9
TPR.G28740 Trifolium pratense HOM05D000002 ORTHO05D000001 6.4e-10 68.2 86 46.5
FvH4_3g15540 Fragaria vesca HOM05D002071 ORTHO05D002109 8.3e-10 67.8 110 40.9
PSO675G7748 Papaver somniferum HOM05D002071 ORTHO05D002109 8.3e-10 67.8 96 46.9
Manes.14G011805 Manihot esculenta HOM05D002071 ORTHO05D002109 1.1e-09 67.4 57 59.6
MD05G1222300 Malus domestica HOM05D002071 ORTHO05D002109 1.4e-09 67.0 107 43.0
PSO675G2413 Papaver somniferum HOM05D002071 ORTHO05D002109 3.2e-09 65.9 96 45.8
MD10G1203900 Malus domestica HOM05D002071 ORTHO05D002109 4.1e-09 65.5 107 43.0
Aa31LG7G1070 Aethionema arabicum HOM05D002071 ORTHO05D002109 5.4e-09 65.1 113 43.4
HanXRQChr03g0088161 Helianthus annuus HOM05D000296 ORTHO05D048212 5.4e-09 65.1 42 78.6
Eucgr.F04426 Eucalyptus grandis HOM05D002071 ORTHO05D002109 7.0e-09 64.7 101 40.6
Carub.0002s2600 Capsella rubella HOM05D002071 ORTHO05D002109 3.5e-08 62.4 100 45.0
FAN25G0138 Fragaria x ananassa HOM05D002071 ORTHO05D002109 3.5e-08 62.4 110 38.2
CARHR017000 Cardamine hirsuta HOM05D002071 ORTHO05D002109 4.6e-08 62.0 118 38.1
MELO3C019653.2 Cucumis melo HOM05D002071 ORTHO05D002109 5.9e-08 61.6 88 45.5
FAN16G0661 Fragaria x ananassa HOM05D002071 ORTHO05D002109 3.0e-07 59.3 110 37.3
Solyc07g066520.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 3.9e-07 58.9 58 56.9
HanXRQChr10g0298961 Helianthus annuus HOM05D000296 ORTHO05D048212 1.1e-06 57.4 38 73.7
Sopen07g034680 Solanum pennellii HOM05D002071 ORTHO05D002109 1.5e-06 57.0 140 37.1
FAN21G0659 Fragaria x ananassa HOM05D002071 ORTHO05D002109 5.6e-06 55.1 110 35.5


User provided reference genes

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