Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 1.6e-37 159.1 88 100.0
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 4.5e-24 114.4 62 98.4
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-24 114.4 62 98.4
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 4.5e-24 114.4 62 98.4
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 7.6e-24 113.6 62 98.4
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 1.7e-23 112.5 62 95.2
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 2.2e-23 112.1 62 96.8
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 4.9e-23 110.9 62 95.2
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 4.9e-23 110.9 62 91.9
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.9e-23 110.9 62 93.5
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 8.4e-23 110.2 62 91.9
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 8.4e-23 110.2 62 91.9
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 8.4e-23 110.2 62 91.9
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 8.4e-23 110.2 62 91.9
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 8.4e-23 110.2 62 91.9
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.1e-22 109.8 62 90.3
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.1e-22 109.8 62 90.3
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.1e-22 109.8 62 90.3
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.1e-22 109.8 62 90.3
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 2.5e-22 108.6 62 90.3
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 4.2e-22 107.8 62 88.7
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 5.5e-22 107.5 62 88.7
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 5.5e-22 107.5 62 88.7
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 5.5e-22 107.5 62 88.7
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 7.1e-22 107.1 62 93.5
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 9.3e-22 106.7 62 88.7
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 9.3e-22 106.7 62 88.7
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 9.3e-22 106.7 62 88.7
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.2e-21 106.3 62 87.1
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.2e-21 106.3 62 87.1
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.6e-21 105.9 62 87.1
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 1.6e-21 105.9 62 90.3
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 2.7e-21 105.1 68 82.4
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 4.6e-21 104.4 62 87.1
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 6.1e-21 104.0 62 87.1
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 6.1e-21 104.0 62 87.1
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 6.1e-21 104.0 62 88.7
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.1e-21 104.0 62 88.7
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 6.1e-21 104.0 62 88.7
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 6.1e-21 104.0 62 83.9
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 6.1e-21 104.0 62 87.1
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 6.1e-21 104.0 62 87.1
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 7.9e-21 103.6 62 87.1
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 7.9e-21 103.6 63 84.1
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 1.3e-20 102.8 67 79.1
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.8e-20 102.4 62 87.1
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.3e-20 102.1 62 87.1
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.3e-20 102.1 62 83.9
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 8.7e-20 100.1 62 83.9
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 3.3e-19 98.2 63 84.1
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 3.3e-19 98.2 62 77.4
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 4.3e-19 97.8 62 82.3
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 4.3e-19 97.8 62 82.3
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 4.3e-19 97.8 56 92.9
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 5.7e-19 97.4 64 79.7
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.3e-18 96.3 62 80.6
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 2.2e-18 95.5 62 80.6
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 3.1e-17 91.7 58 79.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.1e-17 91.7 62 77.4
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 7.7e-16 87.0 53 79.2
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 1.3e-15 86.3 52 86.5
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 1.3e-15 86.3 52 86.5
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 5.0e-15 84.3 51 86.3
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 8.5e-15 83.6 62 74.2
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 3.2e-14 81.6 53 84.9
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 5.5e-14 80.9 51 84.3
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 1.0e-12 76.6 52 78.8
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 1.0e-12 76.6 52 78.8
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 5.1e-12 74.3 69 65.2
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 6.7e-12 73.9 75 53.3
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 4.3e-11 71.2 52 75.0
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 1.7e-10 69.3 41 80.5
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 2.4e-09 65.5 36 88.9
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 3.4e-08 61.6 67 59.7
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 3.4e-08 61.6 36 83.3
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.4e-08 61.6 36 83.3
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 1.3e-07 59.7 40 77.5
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 8.5e-07 57.0 37 81.1
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-07 57.0 61 60.7
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-07 57.0 62 59.7
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 2.5e-06 55.5 36 77.8
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 4.2e-06 54.7 43 60.5
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 7.2e-06 53.9 32 78.1


User provided reference genes

Program Settings