Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 8.7e-75 283.5 138 100.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.8e-33 145.6 98 76.5
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.5e-26 123.2 92 71.7
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.8e-24 116.3 89 60.7
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 4.1e-24 115.2 101 60.4
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.2e-23 113.6 101 58.4
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.1e-21 107.1 95 60.0
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.9e-21 106.3 107 53.3
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 3.3e-21 105.5 101 56.4
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 4.3e-21 105.1 85 61.2
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.8e-20 102.4 92 57.6
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 3.6e-20 102.1 87 59.8
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 4.7e-20 101.7 95 55.8
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 8.0e-20 100.9 106 53.8
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 8.0e-20 100.9 100 55.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.0e-19 100.5 94 56.4
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.0e-19 100.5 85 61.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.0e-19 100.5 91 56.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.0e-19 98.6 85 60.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 4.0e-19 98.6 87 57.5
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 5.2e-19 98.2 102 52.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.8e-19 97.8 92 56.5
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 8.9e-19 97.4 98 55.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.2e-18 97.1 99 52.5
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.5e-18 96.7 89 52.8
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-18 96.3 81 60.5
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.6e-18 95.9 81 60.5
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 3.4e-18 95.5 90 55.6
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 3.4e-18 95.5 89 59.6
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 5.8e-18 94.7 103 52.4
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.8e-18 94.7 81 59.3
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 7.5e-18 94.4 101 53.5
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 7.5e-18 94.4 94 56.4
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 9.8e-18 94.0 82 59.8
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.3e-17 93.6 91 50.5
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-17 93.2 99 50.5
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.2e-17 92.8 89 57.3
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 2.2e-17 92.8 82 61.0
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 2.9e-17 92.4 89 52.8
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 3.7e-17 92.0 89 56.2
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 3.7e-17 92.0 108 47.2
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.4e-17 91.3 90 48.9
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.1e-16 90.5 78 57.7
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-16 90.5 76 56.6
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.9e-16 89.7 82 58.5
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 1.9e-16 89.7 108 49.1
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.9e-16 89.7 84 57.1
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-16 89.0 75 60.0
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 3.2e-16 89.0 81 56.8
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.1e-16 88.6 100 49.0
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 5.4e-16 88.2 87 57.5
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 9.2e-16 87.4 73 60.3
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.2e-15 87.0 90 51.1
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.2e-15 87.0 90 51.1
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.2e-15 87.0 90 54.4
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.2e-15 87.0 90 54.4
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.2e-15 87.0 77 53.2
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.0e-15 86.3 83 53.0
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.0e-15 86.3 75 58.7
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.0e-15 86.3 92 50.0
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.7e-15 85.9 85 50.6
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.7e-15 85.9 85 50.6
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.7e-15 85.9 101 46.5
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 3.5e-15 85.5 84 54.8
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 4.6e-15 85.1 108 46.3
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 4.6e-15 85.1 86 52.3
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 4.6e-15 85.1 81 56.8
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 6.0e-15 84.7 70 64.3
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 6.0e-15 84.7 91 54.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 6.0e-15 84.7 83 53.0
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.0e-15 84.7 71 59.2
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.8e-15 84.3 117 43.6
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 7.8e-15 84.3 81 54.3
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.0e-14 84.0 97 49.5
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.0e-14 84.0 109 47.7
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.3e-14 83.6 82 56.1
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.3e-14 83.6 80 55.0
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.7e-14 83.2 88 48.9
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.3e-14 82.8 96 50.0
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 3.0e-14 82.4 83 54.2
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 3.9e-14 82.0 86 48.8
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.9e-14 82.0 96 49.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 3.9e-14 82.0 82 54.9
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 3.9e-14 82.0 89 50.6
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 3.9e-14 82.0 84 51.2
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.9e-14 82.0 78 50.0
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 6.6e-14 81.3 93 50.5
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-13 80.5 76 56.6
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.1e-13 80.5 94 46.8
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.1e-13 80.5 102 50.0
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.1e-13 80.5 85 47.1
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.1e-13 80.5 88 51.1
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.5e-13 80.1 89 47.2
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.5e-13 80.1 111 42.3
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.5e-13 80.1 92 52.2
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.5e-13 80.1 99 48.5
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.9e-13 79.7 70 54.3
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 2.5e-13 79.3 73 53.4
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.5e-13 79.3 75 52.0
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.3e-13 79.0 96 47.9
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.3e-13 79.0 76 57.9
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 4.3e-13 78.6 93 46.2
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.3e-13 77.8 65 58.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 7.3e-13 77.8 96 49.0
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 7.3e-13 77.8 76 57.9
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 9.5e-13 77.4 86 51.2
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 9.5e-13 77.4 81 51.9
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 9.5e-13 77.4 96 47.9
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.2e-12 77.0 87 48.3
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 1.2e-12 77.0 85 50.6
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.6e-12 76.6 62 58.1
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.6e-12 76.6 96 47.9
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.1e-12 76.3 94 43.6
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 2.1e-12 76.3 83 51.8
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.1e-12 76.3 97 42.3
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.8e-12 75.9 78 50.0
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.8e-12 75.9 71 54.9
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 3.6e-12 75.5 59 62.7
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 3.6e-12 75.5 54 63.0
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 4.7e-12 75.1 89 47.2
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.2e-12 74.7 83 48.2
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 8.1e-12 74.3 93 43.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.1e-11 73.9 70 52.9
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-11 73.9 96 46.9
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-11 73.9 89 46.1
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.4e-11 73.6 77 49.4
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.8e-11 73.2 60 53.3
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 1.8e-11 73.2 87 46.0
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 2.3e-11 72.8 65 52.3
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.1e-11 72.4 94 44.7
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 8.9e-11 70.9 80 50.0
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.5e-10 70.1 80 48.8
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.5e-10 70.1 80 48.8
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.0e-10 69.7 63 55.6
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.0e-10 69.7 91 47.3
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 2.0e-10 69.7 62 51.6
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.3e-09 67.0 50 62.0
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 3.7e-09 65.5 93 43.0
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 4.9e-09 65.1 81 46.9
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.4e-08 63.5 46 65.2
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.4e-08 62.8 79 45.6
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 3.2e-08 62.4 60 53.3
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 5.4e-08 61.6 50 58.0
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 7.1e-08 61.2 40 70.0
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.2e-07 60.5 49 55.1
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.6e-07 60.1 76 44.7
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 3.5e-07 58.9 49 61.2
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 3.0e-06 55.8 38 71.1
Os02g0234700 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 3.9e-06 55.5 80 45.0
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 5.1e-06 55.1 43 58.1


User provided reference genes

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