Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0038181 Helianthus annuus HOM05D000015 ORTHO05D219812 1.1e-53 213.0 100 100.0
HanXRQChr02g0038171 Helianthus annuus HOM05D000015 ORTHO05D000734 1.1e-15 86.7 67 64.2
ECA236G5045 Erigeron canadensis HOM05D003478 ORTHO05D004196 1.2e-12 76.6 65 58.5
ECA247G2765 Erigeron canadensis HOM05D000015 ORTHO05D000734 3.4e-12 75.1 64 54.7
QL11p046880 Quercus lobata HOM05D000015 ORTHO05D000734 1.3e-11 73.2 57 57.9
ECA247G1194 Erigeron canadensis HOM05D000015 ORTHO05D000734 2.2e-11 72.4 64 54.7
Potri.014G026600 Populus trichocarpa HOM05D000015 ORTHO05D000734 6.5e-11 70.9 63 55.6
TWI36G0627 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 1.1e-10 70.1 68 45.6
Prupe.1G433100 Prunus persica HOM05D000015 ORTHO05D000734 2.5e-10 68.9 44 63.6
Rhsim05G0083300 Rhododendron simsii HOM05D000015 ORTHO05D000734 2.5e-10 68.9 46 65.2
Actinidia38063 Actinidia chinensis HOM05D000015 ORTHO05D000734 4.2e-10 68.2 71 46.5
QL04p018749 Quercus lobata HOM05D000015 ORTHO05D000734 7.1e-10 67.4 82 40.2
MD15G1080300 Malus domestica HOM05D000015 ORTHO05D000734 1.2e-09 66.6 44 61.4
COL.COLO4_26541 Corchorus olitorius HOM05D000015 ORTHO05D000734 1.6e-09 66.2 57 50.9
Dinv39298 Davidia involucrata HOM05D000015 ORTHO05D000734 1.6e-09 66.2 99 38.4
Dinv39295 Davidia involucrata HOM05D000015 ORTHO05D000734 2.7e-09 65.5 99 38.4
Dinv39297 Davidia involucrata HOM05D000015 ORTHO05D000734 2.7e-09 65.5 99 38.4
Dinv39294 Davidia involucrata HOM05D000015 ORTHO05D000734 3.5e-09 65.1 71 45.1
MD05G1275700 Malus domestica HOM05D000015 ORTHO05D000734 4.6e-09 64.7 44 59.1
GSVIVG01009471001 Vitis vinifera HOM05D000015 ORTHO05D000734 4.6e-09 64.7 42 59.5
Dinv39292 Davidia involucrata HOM05D000015 ORTHO05D000734 6.0e-09 64.3 99 37.4
Dinv39296 Davidia involucrata HOM05D000015 ORTHO05D000734 6.0e-09 64.3 93 36.6
MD15G1080400 Malus domestica HOM05D000015 ORTHO05D022729 7.9e-09 63.9 44 59.1
QL04p018792 Quercus lobata HOM05D000015 ORTHO05D000734 7.9e-09 63.9 53 50.9
TWI36G0190 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 7.9e-09 63.9 44 56.8
TWI36G1100 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 7.9e-09 63.9 44 56.8
ATR0584G112 Amborella trichopoda HOM05D000015 ORTHO05D000734 1.3e-08 63.2 39 61.5
ATR0584G274 Amborella trichopoda HOM05D000015 ORTHO05D000734 1.3e-08 63.2 39 61.5
COL.COLO4_32640 Corchorus olitorius HOM05D000015 ORTHO05D000734 1.3e-08 63.2 57 50.9
RcHm_v2.0_Chr6g0308221 Rosa chinensis HOM05D000015 ORTHO05D000734 1.8e-08 62.8 42 57.1
Ciclev10003898m.g Citrus clementina HOM05D000015 ORTHO05D000734 3.0e-08 62.0 88 34.1
COL.COLO4_26543 Corchorus olitorius HOM05D000015 ORTHO05D000734 3.0e-08 62.0 43 60.5
Eucgr.G01657 Eucalyptus grandis HOM05D000015 ORTHO05D000734 3.0e-08 62.0 39 61.5
Eucgr.L02407 Eucalyptus grandis HOM05D000015 ORTHO05D000734 3.0e-08 62.0 39 61.5
Gohir.A05G203800 Gossypium hirsutum HOM05D000015 ORTHO05D000734 3.0e-08 62.0 44 59.1
Gohir.D05G207000 Gossypium hirsutum HOM05D000015 ORTHO05D000734 3.0e-08 62.0 44 59.1
Gorai.009G213600 Gossypium raimondii HOM05D000015 ORTHO05D000734 3.0e-08 62.0 44 59.1
Manes.05G175400 Manihot esculenta HOM05D000015 ORTHO05D000734 3.0e-08 62.0 39 64.1
MBI09_g14910_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000734 3.9e-08 61.6 57 50.9
CSS0029368 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000734 6.7e-08 60.8 57 50.9
Eucgr.F02324 Eucalyptus grandis HOM05D000015 ORTHO05D000734 6.7e-08 60.8 39 59.0
Lj4P770T42 Lonicera japonica HOM05D000015 ORTHO05D000734 6.7e-08 60.8 46 54.3
FAN20G2695 Fragaria x ananassa HOM05D000015 ORTHO05D000734 8.7e-08 60.5 42 54.8
FAN27G1135 Fragaria x ananassa HOM05D000015 ORTHO05D000734 8.7e-08 60.5 42 54.8
Thecc.08G004100 Theobroma cacao HOM05D000015 ORTHO05D000734 8.7e-08 60.5 44 59.1
Duzib093G1180 Durio zibethinus HOM05D000015 ORTHO05D000734 1.1e-07 60.1 44 56.8
Gohir.A07G052700 Gossypium hirsutum HOM05D000015 ORTHO05D000734 1.1e-07 60.1 44 59.1
Gohir.D07G057100 Gossypium hirsutum HOM05D000015 ORTHO05D000734 1.1e-07 60.1 44 59.1
Gorai.001G060600 Gossypium raimondii HOM05D000015 ORTHO05D000734 1.1e-07 60.1 44 59.1
Lsat_1_v5_gn_1_21620 Lactuca sativa HOM05D000015 ORTHO05D000734 1.1e-07 60.1 46 56.5
RcHm_v2.0_Chr6g0308211 Rosa chinensis HOM05D000015 ORTHO05D000734 1.1e-07 60.1 44 56.8
FvH4_2g34120 Fragaria vesca HOM05D000015 ORTHO05D000734 1.5e-07 59.7 41 56.1
FAN24G0434 Fragaria x ananassa HOM05D000015 ORTHO05D000734 1.5e-07 59.7 41 56.1
FvH4_2g34130 Fragaria vesca HOM05D000015 ORTHO05D000734 1.9e-07 59.3 39 61.5
FAN24G2375 Fragaria x ananassa HOM05D000015 ORTHO05D000734 1.9e-07 59.3 39 61.5
Lsat_1_v5_gn_1_21441 Lactuca sativa HOM05D000015 ORTHO05D000734 1.9e-07 59.3 41 58.5
ATR0584G107 Amborella trichopoda HOM05D000015 ORTHO05D000734 2.5e-07 58.9 38 60.5
Prupe.1G433200 Prunus persica HOM05D000015 ORTHO05D000734 2.5e-07 58.9 44 54.5
Thecc.08G004200 Theobroma cacao HOM05D000015 ORTHO05D000734 2.5e-07 58.9 44 56.8
ATR0584G250 Amborella trichopoda HOM05D000015 ORTHO05D000734 3.3e-07 58.5 39 61.5
FvH4_2g34150 Fragaria vesca HOM05D000015 ORTHO05D000734 3.3e-07 58.5 44 54.5
FvH4_2g34211 Fragaria vesca HOM05D000015 ORTHO05D000734 3.3e-07 58.5 44 54.5
FAN15G3543 Fragaria x ananassa HOM05D000015 ORTHO05D000734 3.3e-07 58.5 42 52.4
FAN24G0459 Fragaria x ananassa HOM05D000015 ORTHO05D022729 3.3e-07 58.5 44 54.5
Gohir.A12G023300 Gossypium hirsutum HOM05D000015 ORTHO05D000734 3.3e-07 58.5 57 49.1
Gorai.008G024400 Gossypium raimondii HOM05D000015 ORTHO05D000734 3.3e-07 58.5 57 49.1
Medtr7g079300 Medicago truncatula HOM05D000015 ORTHO05D000734 3.3e-07 58.5 80 38.8
Psat0s1633g0120 Pisum sativum HOM05D000015 ORTHO05D000734 3.3e-07 58.5 66 42.4
RcHm_v2.0_Chr6g0308201 Rosa chinensis HOM05D000015 ORTHO05D000734 3.3e-07 58.5 44 54.5
Actinidia00433 Actinidia chinensis HOM05D000015 ORTHO05D000734 4.3e-07 58.2 57 49.1
Gorai.N019700 Gossypium raimondii HOM05D000015 ORTHO05D000734 4.3e-07 58.2 57 49.1
Manes.09G085583 Manihot esculenta HOM05D000015 ORTHO05D000984 4.3e-07 58.2 88 37.5
SGA_v2.0_scaffold143G35774 Striga asiatica HOM05D000015 ORTHO05D000249 4.3e-07 58.2 68 36.8
Atru.chr1.3133 Acer truncatum HOM05D000015 ORTHO05D000734 5.7e-07 57.8 57 47.4
Atru.chr1.3137 Acer truncatum HOM05D000015 ORTHO05D000734 5.7e-07 57.8 57 47.4
Actinidia23292 Actinidia chinensis HOM05D000015 ORTHO05D000734 5.7e-07 57.8 41 53.7
HanXRQChr03g0073521 Helianthus annuus HOM05D000015 ORTHO05D000734 5.7e-07 57.8 57 49.1
TPR.G35443 Trifolium pratense HOM05D000015 ORTHO05D000734 5.7e-07 57.8 66 42.4
GSVIVG01031724001 Vitis vinifera HOM05D000015 ORTHO05D000734 5.7e-07 57.8 57 49.1
GSVIVG01031725001 Vitis vinifera HOM05D000015 ORTHO05D000734 5.7e-07 57.8 57 49.1
Atru.chr5.2714 Acer truncatum HOM05D000015 ORTHO05D000734 7.4e-07 57.4 57 45.6
AUR62016050 Chenopodium quinoa HOM05D000015 ORTHO05D000984 7.4e-07 57.4 55 43.6
COL.COLO4_26542 Corchorus olitorius HOM05D000015 ORTHO05D000734 7.4e-07 57.4 44 54.5
TWI36G1292 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 7.4e-07 57.4 57 45.6
TAR376G0919 Trochodendron aralioides HOM05D000015 ORTHO05D000734 7.4e-07 57.4 40 60.0
Atru.chr5.2670 Acer truncatum HOM05D000015 ORTHO05D000734 9.6e-07 57.0 57 45.6
Atru.chr5.2674 Acer truncatum HOM05D000015 ORTHO05D000734 9.6e-07 57.0 57 45.6
Gohir.D12G023925 Gossypium hirsutum HOM05D000015 ORTHO05D000734 9.6e-07 57.0 57 47.4
Gohir.D12G023975 Gossypium hirsutum HOM05D000015 ORTHO05D000734 9.6e-07 57.0 57 47.4
Hma1.2p1_0360F.1_g135680 Hydrangea macrophylla HOM05D000015 ORTHO05D000734 9.6e-07 57.0 44 50.0
Ciclev10029893m.g Citrus clementina HOM05D000015 ORTHO05D000734 1.3e-06 56.6 57 47.4
FAN03G0912 Fragaria x ananassa HOM05D000015 ORTHO05D000734 1.3e-06 56.6 44 56.8
Lsat_1_v5_gn_9_110980 Lactuca sativa HOM05D000015 ORTHO05D000734 1.3e-06 56.6 57 47.4
Manes.16G104900 Manihot esculenta HOM05D000015 ORTHO05D000984 1.3e-06 56.6 55 47.3
Zm00001eb050140 Zea mays HOM05D000015 ORTHO05D000249 1.3e-06 56.6 58 44.8
Hma1.2p1_0370F.1_g137700 Hydrangea macrophylla HOM05D000015 ORTHO05D000734 1.6e-06 56.2 57 45.6
PSO210G2631 Papaver somniferum HOM05D000015 ORTHO05D000734 1.6e-06 56.2 44 52.3
Sc02g0007270 Simmondsia chinensis HOM05D000015 ORTHO05D000734 1.6e-06 56.2 41 53.7
GSVIVG01006968001 Vitis vinifera HOM05D000015 ORTHO05D000984 1.6e-06 56.2 73 39.7
Atru.chr5.2715 Acer truncatum HOM05D000015 ORTHO05D000734 2.1e-06 55.8 57 45.6
SEGI_32922 Sequoiadendron giganteum HOM05D000015 ORTHO05D000734 2.1e-06 55.8 79 36.7
TWI56G0159 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 2.1e-06 55.8 39 53.8
TAR376G0904 Trochodendron aralioides HOM05D000015 ORTHO05D000734 2.1e-06 55.8 57 45.6
GSVIVG01031723001 Vitis vinifera HOM05D000015 ORTHO05D000734 2.1e-06 55.8 57 45.6
ATR0584G181 Amborella trichopoda HOM05D000015 ORTHO05D000734 2.8e-06 55.5 39 59.0
Medtr7g079295 Medicago truncatula HOM05D000015 ORTHO05D000734 2.8e-06 55.5 80 38.8
TWI36G0165 Tripterygium wilfordii HOM05D000015 ORTHO05D000734 2.8e-06 55.5 57 43.9
TAR376G0503 Trochodendron aralioides HOM05D000015 ORTHO05D000734 2.8e-06 55.5 40 57.5
TAR381G0428 Trochodendron aralioides HOM05D000015 ORTHO05D000249 2.8e-06 55.5 66 42.4
Gohir.D05G264100 Gossypium hirsutum HOM05D000015 ORTHO05D000734 3.7e-06 55.1 57 47.4
Medtr7g079310 Medicago truncatula HOM05D000015 ORTHO05D000734 3.7e-06 55.1 66 40.9
Potri.011G050000 Populus trichocarpa HOM05D000015 ORTHO05D000984 3.7e-06 55.1 55 47.3
Potri.011G050300 Populus trichocarpa HOM05D000015 ORTHO05D000984 3.7e-06 55.1 55 47.3
ATR0584G104 Amborella trichopoda HOM05D000015 ORTHO05D000734 4.8e-06 54.7 57 42.1
BcaB04g20063 Brassica carinata HOM05D000015 ORTHO05D000249 4.8e-06 54.7 73 35.6
Cpa.g.c33779.2 Carica papaya HOM05D000015 ORTHO05D000734 4.8e-06 54.7 57 43.9
ClCG01G012510 Citrullus lanatus HOM05D000015 ORTHO05D009900 4.8e-06 54.7 57 40.4
Gohir.D12G024000 Gossypium hirsutum HOM05D000015 ORTHO05D000734 4.8e-06 54.7 57 47.4
HanXRQChr09g0246801 Helianthus annuus HOM05D000015 ORTHO05D000803 4.8e-06 54.7 44 54.5
SEGI_29296 Sequoiadendron giganteum HOM05D000015 ORTHO05D000734 4.8e-06 54.7 79 36.7
Actinidia17875 Actinidia chinensis HOM05D000015 ORTHO05D000734 6.2e-06 54.3 57 43.9
CANSAT21G0666 Cannabis sativa HOM05D000015 ORTHO05D001173 6.2e-06 54.3 58 44.8
CAN.G1194.7 Capsicum annuum HOM05D000015 ORTHO05D000734 6.2e-06 54.3 57 42.1
ClCG08G016450 Citrullus lanatus HOM05D000015 ORTHO05D000734 6.2e-06 54.3 57 45.6
HanXRQChr15g0491101 Helianthus annuus HOM05D000015 ORTHO05D000803 6.2e-06 54.3 42 57.1
Os03g0605300 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D000249 6.2e-06 54.3 57 42.1
Potri.011G050100 Populus trichocarpa HOM05D000015 ORTHO05D000984 6.2e-06 54.3 55 45.5
SEGI_02018 Sequoiadendron giganteum HOM05D000015 ORTHO05D000734 6.2e-06 54.3 79 36.7
vmacro22275 Vaccinium macrocarpon HOM05D000015 ORTHO05D000734 6.2e-06 54.3 32 68.8
AUR62021256 Chenopodium quinoa HOM05D000015 ORTHO05D000984 8.2e-06 53.9 55 41.8
Eucgr.G01420 Eucalyptus grandis HOM05D000015 ORTHO05D000734 8.2e-06 53.9 42 52.4
Eucgr.G01428 Eucalyptus grandis HOM05D000015 ORTHO05D000734 8.2e-06 53.9 42 52.4
Eucgr.G01430 Eucalyptus grandis HOM05D000015 ORTHO05D000734 8.2e-06 53.9 42 52.4
Psat6g052040 Pisum sativum HOM05D000015 ORTHO05D000734 8.2e-06 53.9 41 51.2
QL02p004418 Quercus lobata HOM05D000015 ORTHO05D000734 8.2e-06 53.9 80 33.8
Sopen04g032340 Solanum pennellii HOM05D000015 ORTHO05D000734 8.2e-06 53.9 57 42.1
PGSC0003DMG400015411 Solanum tuberosum HOM05D000015 ORTHO05D000734 8.2e-06 53.9 57 42.1
TPR.G23128 Trifolium pratense HOM05D000015 ORTHO05D000984 8.2e-06 53.9 55 47.3
VMungo0331G1695 Vigna mungo HOM05D000015 ORTHO05D000734 8.2e-06 53.9 68 38.2


User provided reference genes

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