Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 2.4e-24 114.8 62 100.0
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-17 92.0 61 83.6
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 1.9e-16 88.6 61 82.0
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.8e-15 83.2 61 77.0
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.8e-15 83.2 61 77.0
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.8e-15 83.2 61 77.0
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.8e-15 83.2 61 77.0
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.8e-15 83.2 61 77.0
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 3.0e-14 81.3 61 75.4
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 3.0e-14 81.3 61 75.4
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 3.0e-14 81.3 61 75.4
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 3.0e-14 81.3 61 75.4
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 3.9e-14 80.9 61 75.4
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.0e-14 80.5 61 75.4
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 6.6e-14 80.1 61 73.8
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.9e-13 78.6 61 73.8
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 2.5e-13 78.2 61 73.8
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 3.3e-13 77.8 61 72.1
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 3.3e-13 77.8 61 72.1
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 9.5e-13 76.3 61 68.9
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 1.2e-12 75.9 61 68.9
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.2e-12 75.9 60 71.7
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 1.2e-12 75.9 58 74.1
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 1.6e-12 75.5 61 68.9
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 3.6e-12 74.3 61 67.2
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 3.6e-12 74.3 61 72.1
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 4.7e-12 73.9 61 70.5
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 4.7e-12 73.9 49 83.7
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 4.7e-12 73.9 61 70.5
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 6.2e-12 73.6 61 67.2
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 8.1e-12 73.2 59 71.2
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 1.1e-11 72.8 51 78.4
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 1.4e-11 72.4 61 67.2
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.8e-11 72.0 61 65.6
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 1.8e-11 72.0 61 65.6
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.8e-11 72.0 61 65.6
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 5.2e-11 70.5 61 68.9
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 5.2e-11 70.5 61 68.9
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 5.2e-11 70.5 61 68.9
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 5.2e-11 70.5 61 68.9
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 1.2e-10 69.3 61 62.3
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 1.2e-10 69.3 58 67.2
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-10 68.2 50 76.0
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 3.4e-10 67.8 56 66.1
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 5.8e-10 67.0 61 62.3
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 7.5e-10 66.6 61 65.6
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 9.8e-10 66.2 60 66.7
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.7e-09 65.5 61 65.6
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 1.9e-08 62.0 61 62.3
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.9e-08 62.0 44 77.3
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 7.1e-08 60.1 61 60.7
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 1.2e-07 59.3 42 76.2
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 3.0e-06 54.7 62 54.8
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 3.0e-06 54.7 47 68.1
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 8.6e-06 53.1 36 80.6


User provided reference genes

Program Settings