Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 1.7e-33 145.6 84 100.0
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-25 118.6 83 83.1
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-25 118.6 83 83.1
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-25 118.6 83 83.1
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-25 118.6 83 83.1
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-25 118.6 83 83.1
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-25 118.6 83 83.1
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-25 118.6 83 83.1
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 9.5e-24 113.2 81 82.7
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 6.2e-23 110.5 77 83.1
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.0e-22 107.8 83 75.9
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.0e-22 107.8 83 75.9
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.0e-22 107.8 83 75.9
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.0e-22 107.8 83 75.9
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.0e-22 107.8 83 75.9
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 1.2e-21 106.3 83 75.9
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.5e-21 105.9 83 75.9
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 4.4e-21 104.4 83 74.7
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 4.4e-21 104.4 83 74.7
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.8e-21 104.0 83 74.7
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 9.9e-21 103.2 83 73.5
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 9.9e-21 103.2 83 73.5
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 1.3e-20 102.8 83 72.3
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 1.3e-20 102.8 83 72.3
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 2.2e-20 102.1 80 73.8
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 6.4e-20 100.5 82 73.2
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 8.3e-20 100.1 83 71.1
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 1.1e-19 99.8 83 73.5
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 1.4e-19 99.4 83 72.3
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 1.4e-19 99.4 83 72.3
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 1.9e-19 99.0 82 70.7
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 3.2e-19 98.2 82 70.7
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 3.2e-19 98.2 83 69.9
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 7.1e-19 97.1 82 69.5
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 7.1e-19 97.1 83 69.9
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.2e-18 96.3 83 71.1
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 1.6e-18 95.9 83 71.1
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 1.6e-18 95.9 83 71.1
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.6e-18 95.9 83 71.1
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 1.6e-18 95.9 82 68.3
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 2.7e-18 95.1 82 69.5
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 4.6e-18 94.4 70 80.0
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 4.6e-18 94.4 82 67.1
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 4.6e-18 94.4 82 67.1
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.7e-17 92.4 82 65.9
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 2.3e-17 92.0 83 68.7
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 3.0e-17 91.7 68 79.4
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 3.9e-17 91.3 83 68.7
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-16 89.7 61 82.0
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.5e-16 89.4 82 64.6
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 2.5e-16 88.6 82 63.4
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 5.6e-16 87.4 83 65.1
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 7.3e-16 87.0 83 67.5
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 1.2e-15 86.3 64 78.1
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 4.7e-15 84.3 83 63.9
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 3.1e-14 81.6 65 75.4
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 5.2e-14 80.9 69 69.6
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.0e-13 79.0 58 79.3
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 8.4e-12 73.6 83 57.8
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 4.1e-11 71.2 65 63.1
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 9.2e-11 70.1 51 76.5
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 1.7e-09 65.9 56 62.5
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 8.7e-09 63.5 73 61.6
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 1.1e-08 63.2 74 58.1
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 1.4e-06 56.2 46 71.7


User provided reference genes

Program Settings