Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.8e-171 605.1 292 100.0
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 4.6e-158 561.2 278 97.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 1.9e-135 486.1 290 82.8
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 4.2e-127 458.4 278 81.3
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 1.4e-122 443.4 278 79.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 2.0e-121 439.5 274 78.1
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 6.7e-109 397.9 273 72.9
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 5.7e-108 394.8 274 72.6
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 1.7e-107 393.3 263 72.6
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 1.8e-106 389.8 281 69.0
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 3.1e-106 389.0 264 72.0
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 5.3e-106 388.3 263 73.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 1.6e-105 386.7 270 73.0
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 1.6e-105 386.7 264 72.0
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 2.0e-105 386.3 265 71.3
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 5.9e-105 384.8 282 68.8
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 7.7e-105 384.4 273 69.2
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 1.0e-104 384.0 264 71.2
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 1.7e-104 383.3 264 72.7
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 2.2e-104 382.9 274 70.1
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 2.9e-104 382.5 259 74.9
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 2.9e-104 382.5 264 71.6
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.0e-104 381.7 273 69.2
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 6.5e-104 381.3 264 72.0
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 6.5e-104 381.3 264 71.2
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 8.5e-104 380.9 279 68.1
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 8.5e-104 380.9 268 69.8
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 1.9e-103 379.8 263 71.1
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 4.2e-103 378.6 283 66.8
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 4.2e-103 378.6 264 71.6
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 5.5e-103 378.3 265 71.3
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 5.5e-103 378.3 265 70.2
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 5.5e-103 378.3 264 71.6
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 5.5e-103 378.3 264 71.6
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.2e-103 377.9 261 71.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.2e-103 377.9 263 70.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 9.4e-103 377.5 271 69.7
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 1.2e-102 377.1 263 71.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.6e-102 376.7 265 69.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.6e-102 376.7 264 70.1
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 2.7e-102 375.9 277 67.5
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 2.7e-102 375.9 277 67.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 3.6e-102 375.6 259 71.8
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 6.1e-102 374.8 264 69.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 6.1e-102 374.8 264 71.6
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 1.0e-101 374.0 263 69.2
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 1.4e-101 373.6 250 73.6
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 4.0e-101 372.1 261 68.2
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 5.2e-101 371.7 264 69.3
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 6.7e-101 371.3 263 68.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 6.7e-101 371.3 264 69.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 6.7e-101 371.3 264 70.1
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 6.7e-101 371.3 264 69.7
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 6.7e-101 371.3 262 70.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 6.7e-101 371.3 280 67.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 8.8e-101 370.9 278 66.5
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 8.8e-101 370.9 264 70.8
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 1.1e-100 370.5 261 70.5
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 1.1e-100 370.5 270 70.0
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 2.0e-100 369.8 263 67.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 2.0e-100 369.8 265 69.8
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 4.4e-100 368.6 264 68.6
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 5.7e-100 368.2 270 69.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 5.7e-100 368.2 264 70.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 5.7e-100 368.2 263 68.4
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 9.7e-100 367.5 281 67.6
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 9.7e-100 367.5 288 65.3
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.3e-99 367.1 266 69.9
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 1.3e-99 367.1 275 68.0
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 2.2e-99 366.3 262 67.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 3.7e-99 365.5 263 66.9
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 3.7e-99 365.5 263 66.5
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 6.3e-99 364.8 306 63.7
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 6.3e-99 364.8 264 68.2
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 6.3e-99 364.8 263 68.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 1.4e-98 363.6 263 66.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 1.4e-98 363.6 259 69.9
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.8e-98 363.2 261 68.2
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 1.8e-98 363.2 263 68.1
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 1.8e-98 363.2 272 68.0
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 3.1e-98 362.5 264 68.6
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 5.3e-98 361.7 256 69.9
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 7.0e-98 361.3 263 67.7
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 7.0e-98 361.3 266 69.5
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 9.1e-98 360.9 263 66.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 9.1e-98 360.9 263 67.7
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.1e-98 360.9 250 70.4
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 2.0e-97 359.8 262 67.9
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 2.7e-97 359.4 255 69.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 4.5e-97 358.6 263 68.4
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 7.7e-97 357.8 265 66.4
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 1.0e-96 357.5 262 67.2
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 1.0e-96 357.5 255 67.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 1.0e-96 357.5 278 64.7
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 1.0e-96 357.5 266 69.2
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 1.7e-96 356.7 261 68.2
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 2.2e-96 356.3 263 66.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 2.9e-96 355.9 272 65.8
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 2.9e-96 355.9 252 69.0
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 3.8e-96 355.5 264 67.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 3.8e-96 355.5 264 67.8
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 8.5e-96 354.4 264 65.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 8.5e-96 354.4 261 69.3
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 8.5e-96 354.4 260 68.5
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 1.5e-95 353.6 273 64.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 1.5e-95 353.6 288 64.2
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 3.2e-95 352.4 275 65.5
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 3.2e-95 352.4 275 65.5
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 3.2e-95 352.4 275 65.5
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 3.2e-95 352.4 270 65.2
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 1.2e-94 350.5 264 67.4
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 1.6e-94 350.1 256 68.8
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 2.7e-94 349.4 261 67.0
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 3.6e-94 349.0 260 69.6
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 4.7e-94 348.6 265 68.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 8.0e-94 347.8 282 63.8
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 8.0e-94 347.8 265 66.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 1.0e-93 347.4 269 67.7
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 1.8e-93 346.7 280 65.7
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 1.8e-93 346.7 266 65.4
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 1.8e-93 346.7 264 67.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 3.0e-93 345.9 268 67.2
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 8.8e-93 344.4 264 65.5
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 5.7e-92 341.7 274 66.1
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 5.7e-92 341.7 275 63.3
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 7.5e-92 341.3 264 67.0
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 9.8e-92 340.9 259 66.4
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 1.3e-91 340.5 274 63.5
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.2e-91 339.7 269 66.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.2e-91 339.7 269 66.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.2e-91 339.7 269 66.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 2.2e-91 339.7 269 66.5
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 2.8e-91 339.3 276 64.1
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 3.7e-91 339.0 274 62.4
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 4.8e-91 338.6 262 66.8
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 4.1e-90 335.5 266 66.5
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 4.1e-90 335.5 232 69.8
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 5.4e-90 335.1 261 62.1
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 2.2e-88 329.7 265 62.6
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 4.2e-87 325.5 227 72.2
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 4.2e-87 325.5 227 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.2e-84 317.4 270 60.0
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.5e-84 317.0 273 61.2
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 2.6e-84 316.2 280 59.3
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.6e-84 316.2 264 60.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 1.2e-78 297.4 282 54.3
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 1.0e-72 277.7 284 54.2
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 1.0e-69 267.7 263 56.3
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 2.3e-61 240.0 140 80.0
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 4.0e-61 239.2 131 83.2
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.2e-61 238.8 141 80.9
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.3e-39 166.4 258 39.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-37 161.0 90 87.8
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-21 108.2 130 46.9
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.4e-13 80.5 145 37.2
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.7e-11 74.3 78 52.6
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-09 67.8 45 73.3


User provided reference genes

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