Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 6.5e-105 384.0 188 100.0
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 4.1e-99 364.8 188 93.1
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 1.2e-98 363.2 188 93.1
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 1.5e-98 362.8 188 93.6
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.5e-93 346.3 188 88.3
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 7.4e-93 344.0 188 87.2
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.7e-92 342.8 188 87.8
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 2.8e-92 342.0 188 86.7
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 3.7e-92 341.7 188 87.8
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 4.8e-92 341.3 188 85.6
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.8e-92 341.3 188 86.2
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.8e-92 341.3 188 86.2
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 4.8e-92 341.3 188 87.8
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 6.3e-92 340.9 188 84.6
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 6.3e-92 340.9 188 87.8
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 8.2e-92 340.5 188 86.2
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 86.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.8e-91 339.3 188 85.6
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 2.4e-91 339.0 188 85.6
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 3.1e-91 338.6 188 86.2
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 4.1e-91 338.2 188 85.6
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 5.3e-91 337.8 188 84.6
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 5.3e-91 337.8 188 83.5
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 6.9e-91 337.4 187 85.0
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 6.9e-91 337.4 188 84.6
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 6.9e-91 337.4 188 85.1
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.5e-90 336.3 188 84.6
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.0e-90 335.9 185 84.3
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.0e-90 335.9 185 84.3
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 2.0e-90 335.9 185 83.8
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 2.6e-90 335.5 185 82.7
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.4e-90 335.1 181 85.1
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 4.5e-90 334.7 188 83.0
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 4.5e-90 334.7 185 81.6
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 5.9e-90 334.3 188 83.5
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.0e-89 333.6 181 84.5
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.0e-89 333.6 187 83.4
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.3e-89 333.2 188 83.5
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 1.7e-89 332.8 188 84.0
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 1.7e-89 332.8 188 81.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 1.7e-89 332.8 178 87.1
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.7e-89 332.8 188 84.0
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 3.8e-89 331.6 185 82.2
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 5.0e-89 331.3 188 82.4
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 5.0e-89 331.3 188 83.0
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 6.5e-89 330.9 186 82.8
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.1e-88 330.1 180 83.9
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 188 84.0
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 180 84.4
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.4e-88 329.7 180 84.4
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 1.9e-88 329.3 181 84.0
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.9e-88 329.3 188 82.4
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 2.5e-88 328.9 188 81.9
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 3.2e-88 328.6 185 82.2
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 82.8
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 4.2e-88 328.2 185 82.2
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 4.2e-88 328.2 188 81.4
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 5.5e-88 327.8 188 84.6
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 9.4e-88 327.0 182 83.0
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 9.4e-88 327.0 186 81.7
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 1.2e-87 326.6 185 81.6
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.6e-87 326.2 180 83.3
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 2.7e-87 325.5 180 84.4
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 3.6e-87 325.1 180 81.7
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 3.6e-87 325.1 182 80.8
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.6e-87 325.1 188 81.4
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 4.7e-87 324.7 182 83.0
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 4.7e-87 324.7 182 82.4
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 7.9e-87 323.9 188 81.4
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.9e-87 323.9 188 81.4
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.9e-87 323.9 188 81.4
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.4e-86 323.2 188 80.9
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.8e-86 322.8 187 80.7
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 3.0e-86 322.0 182 81.9
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 3.0e-86 322.0 188 80.9
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 3.9e-86 321.6 181 80.7
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 5.2e-86 321.2 181 81.2
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 6.7e-86 320.9 187 79.7
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 8.8e-86 320.5 181 81.2
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 8.8e-86 320.5 181 81.2
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 8.8e-86 320.5 181 80.1
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-85 320.1 181 80.7
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.1e-85 320.1 181 80.1
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.1e-85 320.1 188 80.3
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 1.5e-85 319.7 181 79.6
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.0e-85 319.3 181 80.1
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.0e-85 319.3 188 80.3
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.3e-85 318.5 181 79.6
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 4.4e-85 318.2 181 79.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 4.4e-85 318.2 181 79.0
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 4.4e-85 318.2 181 79.0
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 4.4e-85 318.2 181 80.1
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.4e-85 318.2 188 80.9
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 4.4e-85 318.2 185 79.5
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 5.7e-85 317.8 188 78.2
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 9.7e-85 317.0 181 78.5
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.3e-84 316.6 181 78.5
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.7e-84 316.2 181 78.5
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 6.3e-84 314.3 174 83.3
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 9.1e-83 310.5 172 82.6
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 2.0e-82 309.3 181 79.6
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 5.0e-81 304.7 181 77.9
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.1e-80 303.5 181 77.3
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 2.5e-80 302.4 183 78.1
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 3.2e-80 302.0 182 75.3
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 2.1e-79 299.3 188 75.0
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.4e-78 296.6 188 75.0
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 3.7e-76 288.5 182 73.6
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 4.8e-76 288.1 182 73.1
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 6.3e-76 287.7 180 72.2
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 7.0e-75 284.3 182 72.5
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 1.2e-74 283.5 182 72.0
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 1.2e-74 283.5 182 71.4
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 2.0e-74 282.7 182 71.4
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 7.7e-74 280.8 182 70.9
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 1.3e-73 280.0 182 70.9
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 4.2e-72 275.0 173 71.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 7.2e-72 274.2 181 69.6
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 9.4e-72 273.9 186 69.4
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 7.0e-67 257.7 185 63.2
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.0e-62 243.8 182 56.6
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 1.2e-58 230.3 184 56.5
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.2e-55 220.3 184 54.3
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 3.4e-53 212.2 182 53.8
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 6.4e-52 208.0 191 49.2
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.8e-51 206.5 172 58.7
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 9.2e-51 204.1 187 50.3
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 7.5e-45 184.5 168 50.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.9e-40 169.9 180 47.8
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 1.7e-36 156.8 87 85.1
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 2.8e-31 139.4 192 42.2
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 9.6e-24 114.4 93 57.0
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.4e-22 110.5 156 35.9
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 1.4e-19 100.5 54 83.3
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.1e-06 57.8 88 33.0


User provided reference genes

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