Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0035531 Helianthus annuus HOM05D001736 ORTHO05D002344 6.5e-23 109.8 52 100.0
HanXRQChr05g0143041 Helianthus annuus HOM05D001736 ORTHO05D002344 3.8e-15 84.0 39 97.4
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 4.2e-14 80.5 38 94.7
ECA236G3137 Erigeron canadensis HOM05D001736 ORTHO05D002344 9.4e-14 79.3 39 89.7
Lsat_1_v5_gn_8_66841 Lactuca sativa HOM05D001736 ORTHO05D002344 5.2e-12 73.6 39 79.5
Lj9A685T57 Lonicera japonica HOM05D001736 ORTHO05D002344 5.2e-12 73.6 39 79.5
Ah.01g022710 Amaranthus hybridus HOM05D001736 ORTHO05D002344 1.2e-11 72.4 39 82.1
Dinv41252 Davidia involucrata HOM05D000126 ORTHO05D000085 4.4e-11 70.5 39 76.9
Hund00037 Selenicereus undatus HOM05D001736 ORTHO05D002344 4.4e-11 70.5 39 79.5
Dinv42725 Davidia involucrata HOM05D001736 ORTHO05D002344 7.5e-11 69.7 39 74.4
Dinv43376 Davidia involucrata HOM05D001736 ORTHO05D002344 7.5e-11 69.7 39 74.4
EL10Ac9g21425 Beta vulgaris HOM05D001736 ORTHO05D002344 2.2e-10 68.2 39 74.4
Haze_22103 Corylus avellana HOM05D001736 ORTHO05D002344 2.2e-10 68.2 48 60.4
MELO3C004028.2 Cucumis melo HOM05D001736 ORTHO05D002344 2.8e-10 67.8 40 72.5
vmacro13122 Vaccinium macrocarpon HOM05D001736 ORTHO05D002344 2.8e-10 67.8 39 74.4
AUR62010078 Chenopodium quinoa HOM05D001736 ORTHO05D002344 3.7e-10 67.4 39 74.4
AUR62013072 Chenopodium quinoa HOM05D001736 ORTHO05D002344 3.7e-10 67.4 39 74.4
Duzib170G0281 Durio zibethinus HOM05D001736 ORTHO05D002344 3.7e-10 67.4 39 69.2
Hma1.2p1_3184F.1_g333750 Hydrangea macrophylla HOM05D001736 ORTHO05D002344 3.7e-10 67.4 39 71.8
Rhsim01G0004900 Rhododendron simsii HOM05D001736 ORTHO05D002344 3.7e-10 67.4 39 74.4
DCAR_020123 Daucus carota HOM05D001736 ORTHO05D002344 4.8e-10 67.0 39 71.8
Psat0s509g0040 Pisum sativum HOM05D001736 ORTHO05D002344 4.8e-10 67.0 39 71.8
QL02p097655 Quercus lobata HOM05D001736 ORTHO05D002344 6.3e-10 66.6 39 74.4
RcHm_v2.0_Chr4g0402571 Rosa chinensis HOM05D001736 ORTHO05D002344 6.3e-10 66.6 39 71.8
CANSAT11G2423 Cannabis sativa HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 71.8
FvH4_4g08300 Fragaria vesca HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 71.8
FAN07G2300 Fragaria x ananassa HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 71.8
FAN12G2304 Fragaria x ananassa HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 71.8
Potri.006G168800 Populus trichocarpa HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 74.4
Potri.018G093400 Populus trichocarpa HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 74.4
Prupe.1G086200 Prunus persica HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 74.4
Sc14g0002180 Simmondsia chinensis HOM05D001736 ORTHO05D002344 8.3e-10 66.2 39 69.2
FAN22G0655 Fragaria x ananassa HOM05D001736 ORTHO05D002344 1.1e-09 65.9 39 71.8
Gohir.A08G023208 Gossypium hirsutum HOM05D001736 ORTHO05D002344 1.1e-09 65.9 39 69.2
Gohir.A08G023300 Gossypium hirsutum HOM05D001736 ORTHO05D002344 1.1e-09 65.9 39 69.2
Gohir.D08G033800 Gossypium hirsutum HOM05D001736 ORTHO05D002344 1.1e-09 65.9 39 69.2
Gorai.004G031400 Gossypium raimondii HOM05D001736 ORTHO05D002344 1.1e-09 65.9 39 69.2
Sabra18G0080200 Salix brachista HOM05D001736 ORTHO05D002344 1.1e-09 65.9 39 71.8
Cfa013510 Carpinus fangiana HOM05D001736 ORTHO05D002344 1.4e-09 65.5 39 71.8
Ciclev10008878m.g Citrus clementina HOM05D001736 ORTHO05D002344 1.4e-09 65.5 39 74.4
COL.COLO4_05881 Corchorus olitorius HOM05D001736 ORTHO05D002344 1.4e-09 65.5 39 66.7
Oeu004193.1 Olea europaea HOM05D001736 ORTHO05D002344 1.8e-09 65.1 39 74.4
Hund06413 Selenicereus undatus HOM05D001736 ORTHO05D000099 1.8e-09 65.1 39 69.2
Atru.chr7.650 Acer truncatum HOM05D001736 ORTHO05D002344 2.4e-09 64.7 39 69.2
Thhalv10025801m.g Eutrema salsugineum HOM05D001736 ORTHO05D002344 2.4e-09 64.7 39 66.7
Ca_21172_v3 Cicer arietinum L. HOM05D001736 ORTHO05D002344 3.1e-09 64.3 39 69.2
Ca_21221_v3 Cicer arietinum L. HOM05D001736 ORTHO05D002344 3.1e-09 64.3 39 69.2
ClCG11G012180 Citrullus lanatus HOM05D001736 ORTHO05D002344 3.1e-09 64.3 39 71.8
CsaV3_2G008360 Cucumis sativus L. HOM05D001736 ORTHO05D002344 3.1e-09 64.3 39 69.2
Thecc.09G172700 Theobroma cacao HOM05D001736 ORTHO05D002344 3.1e-09 64.3 39 64.1
TAR636G2366 Trochodendron aralioides HOM05D001736 ORTHO05D002344 3.1e-09 64.3 39 69.2
Duzib168G0595 Durio zibethinus HOM05D001736 ORTHO05D002344 4.1e-09 63.9 39 69.2
MD13G1255100 Malus domestica HOM05D001736 ORTHO05D002344 4.1e-09 63.9 39 71.8
MD16G1258200 Malus domestica HOM05D001736 ORTHO05D002344 4.1e-09 63.9 39 71.8
Nn2g12715 Nelumbo nucifera HOM05D001736 ORTHO05D002344 4.1e-09 63.9 39 71.8
Phvul.003G146200 Phaseolus vulgaris HOM05D001736 ORTHO05D002344 4.1e-09 63.9 39 69.2
VMungo1215G2460 Vigna mungo HOM05D001736 ORTHO05D002344 4.1e-09 63.9 39 69.2
Glyma.17G063600 Glycine max HOM05D001736 ORTHO05D002344 5.4e-09 63.5 42 66.7
Sabra06G0130200 Salix brachista HOM05D001736 ORTHO05D002344 5.4e-09 63.5 39 69.2
Glyma.20G083500 Glycine max HOM05D001736 ORTHO05D002344 7.0e-09 63.2 39 69.2
THA.LOC104803498 Tarenaya hassleriana HOM05D001736 ORTHO05D002344 9.1e-09 62.8 39 69.2
Cpa.g.sc95.53 Carica papaya HOM05D001736 ORTHO05D002344 1.2e-08 62.4 39 71.8
CiPaw.07G192100 Carya illinoinensis HOM05D001736 ORTHO05D002344 1.2e-08 62.4 39 69.2
Lalb_Chr07g0180451 Lupinus albus HOM05D001736 ORTHO05D002344 1.2e-08 62.4 39 69.2
Medtr4g128220 Medicago truncatula HOM05D001736 ORTHO05D002344 1.2e-08 62.4 39 66.7
Oeu042161.1 Olea europaea HOM05D001736 ORTHO05D002344 1.2e-08 62.4 39 71.8
Actinidia04149 Actinidia chinensis HOM05D001736 ORTHO05D002344 1.6e-08 62.0 39 66.7
Migut.K00243 Erythranthe guttata HOM05D001736 ORTHO05D002344 1.6e-08 62.0 39 71.8
Lj4g0002153 Lotus japonicus HOM05D001736 ORTHO05D002344 1.6e-08 62.0 39 64.1
Manes.14G153000 Manihot esculenta HOM05D001736 ORTHO05D002344 1.6e-08 62.0 39 69.2
CiPaw.08G036600 Carya illinoinensis HOM05D001736 ORTHO05D002344 2.0e-08 61.6 39 66.7
Gohir.A05G004500 Gossypium hirsutum HOM05D001736 ORTHO05D002344 2.0e-08 61.6 39 66.7
Gohir.D05G005300 Gossypium hirsutum HOM05D001736 ORTHO05D002344 2.0e-08 61.6 39 66.7
Gorai.009G005200 Gossypium raimondii HOM05D001736 ORTHO05D002344 2.0e-08 61.6 39 66.7
SalBow6G5740 Salvia bowleyana HOM05D001736 ORTHO05D002344 2.0e-08 61.6 39 69.2
A08p19330 Brassica napus HOM05D001736 ORTHO05D002344 2.7e-08 61.2 39 66.7
BraA08t33894Z Brassica rapa HOM05D001736 ORTHO05D002344 2.7e-08 61.2 39 66.7
PSO170G0946 Papaver somniferum HOM05D001736 ORTHO05D002344 2.7e-08 61.2 40 72.5
Sp7g28120 Schrenkiella parvula HOM05D001736 ORTHO05D002344 2.7e-08 61.2 39 64.1
Carub.0007s1037 Capsella rubella HOM05D001736 ORTHO05D002344 3.5e-08 60.8 40 65.0
Cc06_g13280 Coffea canephora HOM05D001736 ORTHO05D002344 3.5e-08 60.8 39 66.7
AL7G21910 Arabidopsis lyrata HOM05D001736 ORTHO05D002344 4.5e-08 60.5 39 64.1
AT4G30240 Arabidopsis thaliana HOM05D001736 ORTHO05D002344 4.5e-08 60.5 39 64.1
BcaB03g12639 Brassica carinata HOM05D001736 ORTHO05D002344 4.5e-08 60.5 39 64.1
Hma1.2p1_1710F.1_g298630 Hydrangea macrophylla HOM05D001736 ORTHO05D002344 4.5e-08 60.5 39 64.1
Aa31LG8G15950 Aethionema arabicum HOM05D001736 ORTHO05D002344 5.9e-08 60.1 39 66.7
ATR0580G177 Amborella trichopoda HOM05D001736 ORTHO05D002344 7.7e-08 59.7 39 64.1
SGA_v2.0_scaffold69G23258 Striga asiatica HOM05D001736 ORTHO05D002344 7.7e-08 59.7 40 75.0
Lalb_Chr13g0300251 Lupinus albus HOM05D001736 ORTHO05D002344 1.0e-07 59.3 39 69.2
TWI34G1116 Tripterygium wilfordii HOM05D001736 ORTHO05D002344 1.0e-07 59.3 39 61.5
Zm00001eb414700 Zea mays HOM05D001736 ORTHO05D002344 1.0e-07 59.3 39 64.1
PSO017G2561 Papaver somniferum HOM05D001736 ORTHO05D002344 1.3e-07 58.9 40 70.0
SalBow1G3656 Salvia bowleyana HOM05D001736 ORTHO05D002344 1.3e-07 58.9 39 66.7
A01p07900 Brassica napus HOM05D001736 ORTHO05D002344 1.7e-07 58.5 39 61.5
BraA01t00736Z Brassica rapa HOM05D001736 ORTHO05D002344 1.7e-07 58.5 39 61.5
TPR.G5412 Trifolium pratense HOM05D001736 ORTHO05D002344 1.7e-07 58.5 39 64.1
TAR625G0598 Trochodendron aralioides HOM05D001736 ORTHO05D002344 1.7e-07 58.5 41 65.9
BcaNung03007 Brassica carinata HOM05D001736 ORTHO05D002344 2.2e-07 58.2 39 61.5
MSTRG.6211 Avicennia marina HOM05D001736 ORTHO05D002344 2.9e-07 57.8 39 66.7
BcaC09g51806 Brassica carinata HOM05D001736 ORTHO05D002344 2.9e-07 57.8 39 59.0
C01p08820 Brassica napus HOM05D001736 ORTHO05D002344 2.9e-07 57.8 39 59.0
BolC1t00872H Brassica oleracea HOM05D001736 ORTHO05D002344 2.9e-07 57.8 39 59.0
Sed0002632 Sechium edule HOM05D001736 ORTHO05D002344 2.9e-07 57.8 39 64.1
SGA_v2.0_scaffold12G06069 Striga asiatica HOM05D001736 ORTHO05D002344 3.8e-07 57.4 39 64.1
MSTRG.26222 Avicennia marina HOM05D001736 ORTHO05D002344 5.0e-07 57.0 39 66.7
Nn1g04627 Nelumbo nucifera HOM05D001736 ORTHO05D002344 5.0e-07 57.0 39 64.1
PGR102G3005 Punica granatum HOM05D001736 ORTHO05D002344 5.0e-07 57.0 39 64.1
Lalb_Chr12g0199371 Lupinus albus HOM05D001736 ORTHO05D002344 6.5e-07 56.6 39 66.7
Potri.014G019100 Populus trichocarpa HOM05D001736 ORTHO05D002344 6.5e-07 56.6 39 59.0
arahy.Tifrunner.gnm1.ann1.6ULA6T Arachis hypogaea HOM05D001736 ORTHO05D002344 8.5e-07 56.2 39 56.4
MSTRG.10737 Avicennia marina HOM05D001736 ORTHO05D002344 8.5e-07 56.2 39 64.1
BcaC01g01162 Brassica carinata HOM05D001736 ORTHO05D002344 1.1e-06 55.8 40 62.5
BolC3t21190H Brassica oleracea HOM05D001736 ORTHO05D002344 1.1e-06 55.8 40 62.5
MBI14_g17364_MAGBIO Magnolia biondii HOM05D001736 ORTHO05D002344 1.5e-06 55.5 39 61.5
Os08g0244100 Oryza sativa ssp. japonica HOM05D001736 ORTHO05D002344 1.9e-06 55.1 39 59.0
Aqoxy7G02324 Aquilegia oxysepala HOM05D001736 ORTHO05D002344 2.5e-06 54.7 39 64.1
arahy.Tifrunner.gnm1.ann1.KI1LIS Arachis hypogaea HOM05D001736 ORTHO05D002344 2.5e-06 54.7 39 53.8
MD08G1088200 Malus domestica HOM05D001736 ORTHO05D002344 2.5e-06 54.7 39 56.4
Aqoxy6G02763 Aquilegia oxysepala HOM05D001736 ORTHO05D002344 3.2e-06 54.3 39 59.0
AL3G53080 Arabidopsis lyrata HOM05D001736 ORTHO05D002344 3.2e-06 54.3 39 64.1
CsaV3_1G031570 Cucumis sativus L. HOM05D001736 ORTHO05D002344 3.2e-06 54.3 39 59.0
unitig_0.g573 Utricularia gibba HOM05D001736 ORTHO05D002344 3.2e-06 54.3 39 64.1
AT2G18860 Arabidopsis thaliana HOM05D001736 ORTHO05D002344 4.2e-06 53.9 39 61.5
Carub.0003s3309 Capsella rubella HOM05D001736 ORTHO05D002344 4.2e-06 53.9 39 61.5
Migut.J01475 Erythranthe guttata HOM05D001736 ORTHO05D002344 4.2e-06 53.9 39 66.7
Phvul.009G070300 Phaseolus vulgaris HOM05D001736 ORTHO05D002344 4.2e-06 53.9 39 59.0
Sabra14G0012500 Salix brachista HOM05D001736 ORTHO05D002344 4.2e-06 53.9 39 53.8
C03p88790 Brassica napus HOM05D001736 ORTHO05D002344 5.5e-06 53.5 40 60.0
Cfa018023 Carpinus fangiana HOM05D001736 ORTHO05D002344 5.5e-06 53.5 39 56.4
Haze_18107 Corylus avellana HOM05D001736 ORTHO05D002344 5.5e-06 53.5 39 56.4
Atru.chr13.802 Acer truncatum HOM05D001736 ORTHO05D002344 7.2e-06 53.1 39 59.0
arahy.Tifrunner.gnm1.ann1.BX8W5K Arachis hypogaea HOM05D001736 ORTHO05D002344 7.2e-06 53.1 39 59.0
arahy.Tifrunner.gnm1.ann1.P7PTW7 Arachis hypogaea HOM05D001736 ORTHO05D002344 7.2e-06 53.1 39 59.0
arahy.Tifrunner.gnm1.ann1.R8TPV6 Arachis hypogaea HOM05D001736 ORTHO05D002344 7.2e-06 53.1 39 59.0
Glyma.17G236900 Glycine max HOM05D001736 ORTHO05D002344 7.2e-06 53.1 39 56.4
PGR083G2667 Punica granatum HOM05D001736 ORTHO05D002344 7.2e-06 53.1 39 56.4
SalBow7G0218 Salvia bowleyana HOM05D001736 ORTHO05D002344 7.2e-06 53.1 39 61.5
Cpa.g.sc21.116 Carica papaya HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 56.4
Ciclev10001640m.g Citrus clementina HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 56.4
Migut.C00502 Erythranthe guttata HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 53.8
Sp3g32330 Schrenkiella parvula HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 59.0
Solyc12g088440.2 Solanum lycopersicum HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 56.4
Sopen12g030420 Solanum pennellii HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 56.4
PGSC0003DMG401011550 Solanum tuberosum HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 56.4
Thecc.08G092100 Theobroma cacao HOM05D001736 ORTHO05D002344 9.5e-06 52.8 39 56.4


User provided reference genes

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