Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 2.7e-120 435.3 205 100.0
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 4.7e-40 168.7 147 53.1
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 9.7e-38 161.0 124 60.5
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 9.7e-38 161.0 123 62.6
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.7e-37 160.2 147 55.1
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 1.7e-37 160.2 124 61.3
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 2.8e-37 159.5 119 61.3
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 3.7e-37 159.1 118 61.9
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 1.4e-36 157.1 124 57.3
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 1.8e-36 156.8 126 57.9
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.8e-36 156.8 119 62.2
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 4.1e-36 155.6 121 57.9
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 4.1e-36 155.6 119 59.7
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 5.3e-36 155.2 139 54.7
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 5.3e-36 155.2 121 56.2
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 5.3e-36 155.2 121 57.9
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 7.0e-36 154.8 119 59.7
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 9.1e-36 154.5 126 56.3
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 9.1e-36 154.5 118 59.3
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 1.2e-35 154.1 123 60.2
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 1.2e-35 154.1 124 58.9
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 1.2e-35 154.1 121 57.9
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 1.6e-35 153.7 118 60.2
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 1.6e-35 153.7 119 59.7
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 2.0e-35 153.3 121 57.9
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 2.0e-35 153.3 126 56.3
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 2.0e-35 153.3 121 57.0
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 2.6e-35 152.9 121 57.0
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.6e-35 152.9 121 57.0
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 2.6e-35 152.9 121 57.0
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 2.6e-35 152.9 122 56.6
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 2.6e-35 152.9 121 57.0
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 3.5e-35 152.5 134 53.7
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 3.5e-35 152.5 123 59.3
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 3.5e-35 152.5 123 59.3
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 4.5e-35 152.1 118 58.5
HanXRQChr07g0195641 Helianthus annuus HOM05D021052 ORTHO05D020586 4.5e-35 152.1 82 93.9
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 4.5e-35 152.1 119 58.8
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 4.5e-35 152.1 121 57.0
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 7.7e-35 151.4 126 57.9
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 7.7e-35 151.4 126 55.6
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.0e-34 151.0 125 57.6
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.0e-34 151.0 125 56.0
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.3e-34 150.6 121 56.2
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 1.3e-34 150.6 122 58.2
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 2.2e-34 149.8 124 57.3
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 2.2e-34 149.8 123 56.1
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 2.9e-34 149.4 118 58.5
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 3.8e-34 149.1 121 54.5
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 3.8e-34 149.1 121 54.5
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 5.0e-34 148.7 124 57.3
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 5.0e-34 148.7 107 63.6
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 6.5e-34 148.3 117 59.0
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 6.5e-34 148.3 140 51.4
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 6.5e-34 148.3 123 57.7
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 6.5e-34 148.3 121 55.4
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 8.5e-34 147.9 118 57.6
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 1.1e-33 147.5 123 57.7
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.5e-33 147.1 119 57.1
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 1.9e-33 146.7 110 61.8
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 2.5e-33 146.4 119 57.1
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 2.5e-33 146.4 168 44.0
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 2.5e-33 146.4 123 55.3
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 2.5e-33 146.4 118 56.8
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 3.2e-33 146.0 119 57.1
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 3.2e-33 146.0 109 59.6
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 3.2e-33 146.0 119 56.3
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 5.5e-33 145.2 119 59.7
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 7.2e-33 144.8 119 58.0
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 7.2e-33 144.8 119 56.3
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 9.4e-33 144.4 119 55.5
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 1.6e-32 143.7 119 56.3
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 1.6e-32 143.7 119 56.3
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 2.1e-32 143.3 119 56.3
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 2.7e-32 142.9 119 55.5
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 3.6e-32 142.5 123 54.5
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 3.6e-32 142.5 109 57.8
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 6.1e-32 141.7 111 56.8
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 6.1e-32 141.7 119 55.5
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 6.1e-32 141.7 119 55.5
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.1e-28 129.4 109 55.0
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 5.9e-27 125.2 101 57.4
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 7.7e-27 124.8 92 60.9
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 7.7e-27 124.8 101 57.4
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.7e-26 123.6 103 54.4
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 2.2e-26 123.2 104 55.8
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.5e-26 121.7 103 54.4
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.5e-26 121.3 106 52.8
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.5e-26 121.3 100 55.0
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 8.5e-26 121.3 109 53.2
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.5e-25 119.8 85 62.4
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 5.5e-25 118.6 99 55.6
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.6e-24 117.1 98 56.1
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.5e-22 110.5 93 54.8
HanXRQChr14g0454661 Helianthus annuus HOM05D021052 ORTHO05D020586 2.0e-22 110.2 82 63.4
ECA238G4120 Erigeron canadensis HOM05D021052 ORTHO05D020586 8.3e-21 104.8 82 64.6
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 5.4e-20 102.1 107 51.4
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 3.5e-19 99.4 102 51.0
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 7.2e-17 91.7 81 54.3
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.5e-14 81.6 84 47.6
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.8e-12 77.0 90 45.6
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.4e-12 76.6 73 52.1
Lsat_1_v5_gn_2_109620 Lactuca sativa HOM05D021052 ORTHO05D020586 2.7e-11 73.2 83 48.2
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 6.6e-10 68.6 58 51.7
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 6.6e-10 68.6 58 51.7
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 9.5e-09 64.7 96 41.7
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.2e-08 64.3 40 70.0
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 3.6e-08 62.8 89 39.3
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 4.7e-08 62.4 87 41.4
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.4e-07 60.8 95 41.1
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 1.4e-07 60.8 93 40.9
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 4.0e-07 59.3 87 40.2
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 4.0e-07 59.3 104 38.5
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 6.8e-07 58.5 85 40.0
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 6.8e-07 58.5 104 37.5
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 1.2e-06 57.8 104 36.5
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.5e-06 57.4 54 48.1
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 2.0e-06 57.0 120 33.3
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 2.0e-06 57.0 88 36.4
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 2.6e-06 56.6 88 37.5
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.4e-06 56.2 92 37.0
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.4e-06 56.2 92 37.0
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 5.7e-06 55.5 85 37.6
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.7e-06 55.5 92 35.9
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 5.7e-06 55.5 81 39.5
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 9.8e-06 54.7 81 38.3


User provided reference genes

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