Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 8.2e-126 453.8 232 100.0
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 3.1e-101 372.1 240 80.4
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 4.9e-78 295.0 159 88.1
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 4.6e-76 288.5 196 76.0
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 1.0e-75 287.3 217 71.9
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 1.0e-75 287.3 219 71.7
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 2.3e-75 286.2 221 71.9
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 3.9e-75 285.4 224 70.5
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 4.7e-73 278.5 214 70.6
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 3.1e-72 275.8 230 65.2
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 6.8e-72 274.6 195 74.4
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 8.9e-72 274.2 234 66.2
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 4.4e-71 271.9 224 67.4
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 9.9e-71 270.8 222 66.7
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 1.3e-70 270.4 208 68.8
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 1.3e-70 270.4 202 67.8
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 2.9e-70 269.2 194 71.6
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 4.9e-70 268.5 198 70.2
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 4.9e-70 268.5 214 67.3
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 1.1e-69 267.3 206 68.0
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 1.1e-69 267.3 198 71.2
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 1.1e-69 267.3 208 68.3
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 1.9e-69 266.5 208 67.8
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 3.2e-69 265.8 221 63.3
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 3.2e-69 265.8 208 67.8
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 5.4e-69 265.0 214 65.9
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 5.4e-69 265.0 185 71.4
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 5.4e-69 265.0 234 64.1
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 7.1e-69 264.6 235 62.6
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 1.2e-68 263.8 210 68.1
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 1.6e-68 263.5 235 64.7
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.6e-68 263.5 186 68.8
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.1e-68 263.1 181 74.0
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.1e-68 263.1 181 74.0
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 2.7e-68 262.7 224 66.5
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 2.7e-68 262.7 226 62.8
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 4.6e-68 261.9 227 63.9
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 6.0e-68 261.5 210 66.2
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 7.8e-68 261.2 184 71.2
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 1.3e-67 260.4 214 65.4
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 2.3e-67 259.6 185 69.7
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 3.0e-67 259.2 210 65.7
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 3.0e-67 259.2 220 63.6
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 3.9e-67 258.8 185 70.3
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.1e-67 258.5 181 72.9
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 8.6e-67 257.7 233 63.1
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.5e-66 256.9 214 64.5
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 1.9e-66 256.5 220 62.7
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 3.3e-66 255.8 172 75.6
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 4.3e-66 255.4 169 73.4
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 9.5e-66 254.2 196 65.3
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 2.8e-65 252.7 188 69.1
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 4.7e-65 251.9 250 57.6
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 6.2e-65 251.5 190 70.5
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 8.1e-65 251.1 202 67.8
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 4.0e-64 248.8 193 66.8
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 4.0e-64 248.8 188 68.6
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 8.9e-64 247.7 242 59.1
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.2e-63 247.3 245 58.4
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 1.5e-63 246.9 189 69.3
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 2.6e-63 246.1 192 69.8
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 7.6e-63 244.6 234 59.0
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 9.9e-63 244.2 187 65.8
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 2.9e-62 242.7 237 58.2
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 4.9e-62 241.9 223 57.8
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 6.4e-62 241.5 223 60.1
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 1.4e-61 240.4 233 60.1
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 2.4e-61 239.6 174 71.3
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 2.4e-61 239.6 174 71.3
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 3.2e-61 239.2 166 72.9
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 5.1e-59 231.9 214 58.4
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 8.7e-59 231.1 198 66.2
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 2.5e-58 229.6 233 54.9
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 2.1e-57 226.5 197 59.4
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 3.6e-57 225.7 233 53.6
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 4.7e-57 225.3 220 59.1
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 8.1e-57 224.6 134 76.1
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 1.1e-56 224.2 202 58.9
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.1e-56 224.2 237 54.4
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 3.1e-56 222.6 191 60.2
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 2.6e-55 219.5 230 56.5
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 4.4e-55 218.8 225 56.0
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 5.8e-55 218.4 228 54.4
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 5.8e-55 218.4 137 74.5
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 7.6e-55 218.0 224 54.0
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 7.6e-55 218.0 224 54.0
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 7.6e-55 218.0 281 48.0
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 9.9e-55 217.6 221 55.2
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 2.2e-54 216.5 234 53.8
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 1.9e-53 213.4 233 54.5
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 4.6e-44 182.2 186 55.9
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 1.1e-40 171.0 167 54.5
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 4.5e-39 165.6 99 76.8
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 3.8e-38 162.5 99 76.8
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 2.1e-33 146.7 165 46.1
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 3.7e-33 146.0 183 49.2
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 8.2e-33 144.8 134 62.7
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 2.6e-31 139.8 115 65.2
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 3.5e-28 129.4 136 58.1
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 3.9e-27 125.9 150 43.3
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 2.0e-23 113.6 64 78.1
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 5.9e-23 112.1 62 82.3
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 6.5e-22 108.6 128 51.6
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 3.6e-20 102.8 148 50.7
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 1.5e-18 97.4 111 45.0
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.5e-14 82.0 59 64.4
Cre17.g714900 Chlamydomonas reinhardtii HOM05D007115 ORTHO05D008923 4.2e-13 79.3 168 29.2
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 1.2e-12 77.8 61 62.3
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.6e-12 77.4 61 62.3
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 1.1e-10 71.2 112 46.4
MCO03G440 Micromonas commoda HOM05D007115 ORTHO05D008923 1.5e-10 70.9 156 32.7
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.8e-08 63.9 108 44.4
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 7.7e-07 58.5 83 37.3
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.7e-06 57.4 47 55.3


User provided reference genes

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