Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 5.0e-87 324.3 153 100.0
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-62 243.4 153 77.1
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 2.7e-61 238.8 153 75.8
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-47 192.6 146 64.4
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 7.2e-46 187.6 148 62.8
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.0e-44 183.7 154 57.8
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-41 173.7 149 59.1
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 2.4e-41 172.6 151 56.3
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 9.2e-41 170.6 126 64.3
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 6.8e-36 154.5 124 61.3
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 5.7e-35 151.4 150 53.3
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.3e-31 140.2 137 47.4
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 3.9e-31 138.7 132 54.5
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 6.6e-31 137.9 137 48.9
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 2.5e-30 136.0 157 45.9
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 2.5e-30 136.0 150 50.0
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 6.2e-29 131.3 157 44.6
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 6.2e-29 131.3 139 45.3
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-28 130.2 150 47.3
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 3.1e-28 129.0 139 45.3
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 4.4e-27 125.2 140 43.6
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 9.8e-27 124.0 158 43.0
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 1.7e-26 123.2 155 41.9
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 2.9e-26 122.5 160 41.9
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 4.9e-26 121.7 137 41.6
HanXRQChr04g0099661 Helianthus annuus HOM05D003325 ORTHO05D003852 4.9e-26 121.7 130 46.2
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 6.4e-26 121.3 150 44.0
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 8.3e-26 120.9 157 40.1
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.9e-25 119.8 160 38.8
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.2e-25 119.0 138 42.8
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 3.2e-25 119.0 156 43.6
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 4.1e-25 118.6 158 38.6
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 5.4e-25 118.2 151 42.4
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.0e-25 117.9 160 38.8
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 7.0e-25 117.9 128 46.9
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 7.0e-25 117.9 150 41.3
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 9.2e-25 117.5 156 39.1
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.6e-24 116.7 128 47.7
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.6e-24 116.7 159 42.1
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 2.0e-24 116.3 139 44.6
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.0e-24 116.3 140 40.7
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 2.7e-24 115.9 146 43.2
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.5e-24 115.5 138 42.0
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 3.5e-24 115.5 143 43.4
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.0e-24 114.8 130 46.9
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 6.0e-24 114.8 159 38.4
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 6.0e-24 114.8 134 44.0
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 7.8e-24 114.4 161 37.9
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 7.8e-24 114.4 159 37.7
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.3e-23 113.6 153 38.6
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.3e-23 112.8 160 40.6
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.0e-23 111.7 161 41.0
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 5.0e-23 111.7 136 37.5
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 5.0e-23 111.7 136 37.5
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 1.9e-22 109.8 158 40.5
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 4.3e-22 108.6 157 39.5
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 5.6e-22 108.2 162 37.7
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 7.3e-22 107.8 145 40.7
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 7.3e-22 107.8 154 39.6
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 7.3e-22 107.8 153 39.2
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 7.3e-22 107.8 138 37.7
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 9.5e-22 107.5 138 39.9
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 9.5e-22 107.5 153 38.6
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.2e-21 107.1 157 40.1
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.2e-21 107.1 161 40.4
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.2e-21 107.1 139 38.8
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.6e-21 106.7 153 37.9
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.6e-21 106.7 138 37.0
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.6e-21 106.7 136 38.2
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 2.1e-21 106.3 159 36.5
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 2.1e-21 106.3 164 36.0
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 3.6e-21 105.5 153 39.9
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.6e-21 105.5 130 40.8
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 3.6e-21 105.5 153 39.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 4.7e-21 105.1 153 38.6
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 6.2e-21 104.8 153 39.2
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 6.2e-21 104.8 153 39.2
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 6.2e-21 104.8 153 39.2
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 6.2e-21 104.8 153 41.8
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 6.2e-21 104.8 153 37.3
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 6.2e-21 104.8 161 39.8
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 6.2e-21 104.8 184 39.1
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 6.2e-21 104.8 129 41.1
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 8.1e-21 104.4 128 39.8
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 1.1e-20 104.0 155 37.4
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 2.3e-20 102.8 127 40.2
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.3e-20 102.8 138 35.5
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 3.1e-20 102.4 153 40.5
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 5.2e-20 101.7 153 39.2
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 6.8e-20 101.3 137 41.6
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 6.8e-20 101.3 151 37.7
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 8.9e-20 100.9 153 39.2
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 8.9e-20 100.9 166 36.7
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.5e-19 100.1 156 37.2
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 2.0e-19 99.8 151 39.1
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 2.6e-19 99.4 128 39.8
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 2.6e-19 99.4 128 39.8
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 2.6e-19 99.4 123 41.5
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 2.6e-19 99.4 150 36.7
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 3.4e-19 99.0 182 40.1
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 5.8e-19 98.2 126 46.0
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 5.8e-19 98.2 161 36.0
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 9.8e-19 97.4 152 36.8
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 1.7e-18 96.7 151 38.4
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.7e-18 96.7 150 37.3
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 2.2e-18 96.3 147 36.1
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.9e-18 95.9 159 36.5
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.9e-18 95.9 136 39.7
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 4.9e-18 95.1 153 35.3
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 6.4e-18 94.7 126 37.3
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 6.4e-18 94.7 155 34.8
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 1.1e-17 94.0 151 38.4
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.4e-17 93.6 151 37.1
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 1.9e-17 93.2 129 40.3
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 3.2e-17 92.4 130 36.9
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 5.4e-17 91.7 158 34.8
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 5.4e-17 91.7 134 34.3
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.4e-17 91.7 136 38.2
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 5.4e-17 91.7 156 36.5
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 7.1e-17 91.3 153 34.0
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 9.2e-17 90.9 161 35.4
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 1.2e-16 90.5 153 34.6
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 2.1e-16 89.7 145 37.9
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 2.1e-16 89.7 126 35.7
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.1e-16 89.7 155 35.5
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.5e-16 89.0 125 36.0
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 7.8e-16 87.8 126 34.1
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 1.3e-15 87.0 132 34.8
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.7e-15 86.7 151 38.4
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 1.7e-15 86.7 109 42.2
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 2.5e-14 82.8 134 41.0
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 4.3e-14 82.0 166 36.1
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.2e-13 80.5 160 36.2
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.2e-13 80.5 160 36.2
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.2e-13 80.5 160 36.2
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 3.6e-13 79.0 165 32.7
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.8e-12 76.6 126 34.9
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.8e-12 76.6 151 33.1
MD06G1139000 Malus domestica HOM05D003325 ORTHO05D003852 6.8e-12 74.7 136 33.8
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.1e-09 67.4 137 33.6
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 1.1e-09 67.4 127 33.1
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.9e-09 66.6 90 36.7
Sabra15G0119600 Salix brachista HOM05D003325 ORTHO05D003852 1.9e-09 66.6 128 32.0
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.4e-09 66.2 127 32.3
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.1e-08 63.2 91 39.6
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 2.1e-08 63.2 135 29.6
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 2.7e-08 62.8 126 32.5
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 3.5e-08 62.4 156 28.8
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 3.5e-08 62.4 156 28.8
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 1.0e-07 60.8 152 28.3
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 1.3e-07 60.5 152 28.3


User provided reference genes

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