Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 8.0e-94 347.1 172 100.0
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 4.0e-53 211.8 155 72.3
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-50 203.4 154 70.1
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 5.4e-50 201.4 163 64.4
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 2.1e-49 199.5 149 69.1
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 2.1e-49 199.5 151 69.5
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 6.0e-49 198.0 151 68.9
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-48 194.9 154 68.2
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 6.2e-46 188.0 151 64.9
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 1.1e-42 177.2 160 62.5
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 1.0e-40 170.6 161 57.8
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 2.6e-36 156.0 153 54.2
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 6.5e-35 151.4 161 53.4
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 3.5e-33 145.6 175 49.1
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 8.7e-32 141.0 159 49.1
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.9e-31 139.8 174 46.6
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 3.3e-31 139.0 143 51.0
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 5.7e-31 138.3 154 51.9
HanXRQChr13g0403611 Helianthus annuus HOM05D003325 ORTHO05D003852 7.4e-31 137.9 101 69.3
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.2e-30 136.3 163 47.9
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 3.7e-30 135.6 163 48.5
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 3.7e-30 135.6 157 49.7
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 8.2e-30 134.4 171 45.6
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 8.2e-30 134.4 171 45.6
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 1.8e-29 133.3 171 46.2
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 2.4e-29 132.9 156 47.4
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.1e-29 132.5 159 47.2
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 4.1e-29 132.1 159 46.5
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 5.3e-29 131.7 159 47.2
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 9.0e-29 131.0 162 49.4
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 9.0e-29 131.0 153 50.3
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 9.0e-29 131.0 159 44.7
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.0e-28 129.8 159 45.9
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 3.4e-28 129.0 174 44.8
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 4.5e-28 128.6 162 45.7
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 4.5e-28 128.6 159 44.7
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 2.2e-27 126.3 153 46.4
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.8e-27 125.6 161 45.3
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 3.8e-27 125.6 165 46.7
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.0e-27 125.2 159 46.5
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 8.5e-27 124.4 162 45.7
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 8.5e-27 124.4 164 43.9
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 8.5e-27 124.4 118 55.1
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 1.1e-26 124.0 154 42.9
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 3.2e-26 122.5 156 46.2
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 9.3e-26 120.9 154 48.1
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 9.3e-26 120.9 114 55.3
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 9.3e-26 120.9 160 47.5
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 1.2e-25 120.6 156 46.2
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 1.6e-25 120.2 161 42.9
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 2.1e-25 119.8 163 43.6
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 2.7e-25 119.4 169 42.6
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 3.6e-25 119.0 162 45.7
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 3.6e-25 119.0 176 42.0
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 3.6e-25 119.0 176 42.0
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 4.6e-25 118.6 159 42.1
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 6.1e-25 118.2 167 41.9
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 6.1e-25 118.2 163 41.1
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 7.9e-25 117.9 175 41.7
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 1.3e-24 117.1 164 44.5
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 1.8e-24 116.7 155 43.2
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 3.0e-24 115.9 161 40.4
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 6.7e-24 114.8 161 41.6
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.7e-24 114.4 160 43.8
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.1e-23 114.0 161 42.9
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 1.1e-23 114.0 161 40.4
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 1.9e-23 113.2 155 42.6
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.9e-23 113.2 158 43.0
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 3.3e-23 112.5 161 42.2
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.3e-23 112.1 160 41.9
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 4.3e-23 112.1 159 40.3
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 7.4e-23 111.3 158 44.9
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 9.7e-23 110.9 161 39.1
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 1.3e-22 110.5 156 44.9
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.3e-22 110.5 159 43.4
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.3e-22 110.5 163 41.7
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 1.7e-22 110.2 157 45.2
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.7e-22 110.2 153 39.2
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.2e-22 109.8 158 43.0
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 2.2e-22 109.8 169 39.6
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.2e-22 109.8 163 41.1
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.2e-22 109.8 163 41.1
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.2e-22 109.8 162 42.0
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 2.8e-22 109.4 158 45.6
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.8e-22 109.4 159 40.9
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 3.7e-22 109.0 161 44.7
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 4.8e-22 108.6 157 43.3
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 6.3e-22 108.2 156 42.3
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 6.3e-22 108.2 161 42.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 8.2e-22 107.8 158 43.0
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.1e-21 107.5 161 38.5
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 1.4e-21 107.1 154 44.8
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 1.8e-21 106.7 159 40.3
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 2.4e-21 106.3 158 42.4
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 4.1e-21 105.5 156 43.6
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 5.3e-21 105.1 156 40.4
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 5.3e-21 105.1 157 45.2
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 6.9e-21 104.8 156 42.9
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.2e-20 104.0 163 42.3
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.0e-20 103.2 151 43.0
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 3.4e-20 102.4 154 43.5
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.4e-20 102.4 163 41.7
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 7.7e-20 101.3 156 38.5
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 7.7e-20 101.3 157 42.0
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 1.0e-19 100.9 165 38.8
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.0e-19 100.9 154 42.9
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.3e-19 100.5 156 37.8
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.3e-19 100.5 151 39.1
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.3e-19 100.5 175 40.0
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 2.2e-19 99.8 162 37.7
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.9e-19 99.4 156 37.2
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 2.9e-19 99.4 156 37.2
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 6.5e-19 98.2 179 38.0
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.9e-18 96.7 110 50.0
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 2.5e-18 96.3 130 44.6
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 3.2e-18 95.9 182 39.0
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 4.2e-18 95.5 142 43.7
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 7.9e-17 91.3 179 34.1
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.0e-16 90.9 159 34.6
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 6.7e-16 88.2 134 38.8
TPR.G496 Trifolium pratense HOM05D003325 ORTHO05D003852 8.8e-16 87.8 114 49.1
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 2.0e-15 86.7 157 35.7
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 3.3e-15 85.9 157 35.0
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 3.3e-15 85.9 155 36.1
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 7.4e-15 84.7 155 38.1
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 9.7e-15 84.3 160 35.6
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 1.3e-14 84.0 156 34.6
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 1.7e-14 83.6 160 34.4
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 2.2e-14 83.2 157 33.8
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 3.7e-14 82.4 157 33.8
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.8e-13 80.1 158 32.9
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 1.8e-13 80.1 61 62.3
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 3.1e-13 79.3 163 35.0
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 4.1e-13 79.0 158 33.5
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 5.3e-13 78.6 156 35.3
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 6.9e-13 78.2 158 33.5
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.2e-12 77.4 151 33.1
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.4e-12 75.9 163 33.1
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.5e-12 75.5 127 34.6
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.5e-12 75.5 127 34.6
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 4.5e-12 75.5 157 32.5
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 5.9e-12 75.1 152 35.5
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 5.9e-12 75.1 158 33.5
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 1.3e-11 73.9 166 30.7
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.9e-11 72.8 78 48.7
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 3.8e-11 72.4 170 28.8
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 3.8e-11 72.4 176 28.4
Sabra15G0119700 Salix brachista HOM05D003325 ORTHO05D003852 6.5e-11 71.6 118 38.1
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 8.5e-11 71.2 160 41.2
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 1.1e-10 70.9 177 29.4
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 1.9e-10 70.1 177 29.4
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 1.9e-10 70.1 177 29.4
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 1.9e-10 70.1 123 35.0
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 2.5e-10 69.7 177 29.4
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 2.5e-10 69.7 177 29.4
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 2.5e-10 69.7 177 29.4
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 7.2e-10 68.2 185 29.2
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.2e-09 67.4 108 40.7
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.5e-07 60.5 185 31.4
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 2.0e-07 60.1 180 26.1
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 3.3e-07 59.3 75 42.7
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 4.4e-07 58.9 110 37.3
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 4.4e-07 58.9 101 37.6
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 2.8e-06 56.2 98 34.7
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 4.8e-06 55.5 56 55.4


User provided reference genes

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