Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0033821 Helianthus annuus HOM05D002316 ORTHO05D002280 2.5e-133 478.8 243 100.0
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 6.4e-105 384.4 214 91.1
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 2.2e-73 279.6 215 70.2
Lsat_1_v5_gn_5_137661 Lactuca sativa HOM05D002316 ORTHO05D002280 5.5e-56 221.9 233 57.9
HanXRQChr10g0311621 Helianthus annuus HOM05D002316 ORTHO05D002280 5.9e-50 201.8 215 55.8
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 1.7e-44 183.7 220 48.2
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 5.0e-41 172.2 220 49.5
Dinv37816 Davidia involucrata HOM05D002316 ORTHO05D002280 5.0e-41 172.2 221 48.9
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 6.5e-41 171.8 219 48.9
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 8.5e-41 171.4 231 48.1
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.1e-40 171.0 221 48.0
Sabra03G0044000 Salix brachista HOM05D002316 ORTHO05D002280 1.5e-40 170.6 244 44.7
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 3.2e-40 169.5 222 47.7
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 3.2e-40 169.5 228 45.2
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 1.2e-39 167.5 218 48.6
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 1.6e-39 167.2 220 45.9
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 2.1e-39 166.8 230 47.8
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.1e-39 166.8 218 48.6
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 3.6e-39 166.0 232 43.5
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 3.6e-39 166.0 219 47.0
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 3.6e-39 166.0 218 47.7
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 4.7e-39 165.6 220 47.7
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 4.7e-39 165.6 230 46.1
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 4.7e-39 165.6 232 43.5
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 4.7e-39 165.6 231 46.8
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 4.7e-39 165.6 218 47.7
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 4.7e-39 165.6 216 46.3
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 6.1e-39 165.2 232 43.5
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 6.1e-39 165.2 232 43.5
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 8.0e-39 164.9 232 43.1
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 1.0e-38 164.5 229 45.4
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 1.0e-38 164.5 219 45.7
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.0e-38 164.5 220 47.3
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 1.0e-38 164.5 218 47.7
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 1.4e-38 164.1 218 48.6
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.8e-38 163.7 232 43.1
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 2.3e-38 163.3 225 45.3
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 4.0e-38 162.5 224 45.1
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 4.0e-38 162.5 220 45.9
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 4.0e-38 162.5 220 45.5
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 4.0e-38 162.5 243 43.2
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 5.2e-38 162.2 241 44.0
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 6.8e-38 161.8 228 44.3
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 6.8e-38 161.8 224 45.1
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 6.8e-38 161.8 217 47.5
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 8.8e-38 161.4 224 45.5
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 8.8e-38 161.4 224 45.5
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 8.8e-38 161.4 224 45.5
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 8.8e-38 161.4 214 46.3
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 8.8e-38 161.4 220 45.5
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 8.8e-38 161.4 230 46.1
vmacro18716 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 8.8e-38 161.4 245 44.1
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 1.2e-37 161.0 228 44.3
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 1.5e-37 160.6 252 42.5
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 1.5e-37 160.6 220 46.4
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 2.6e-37 159.8 230 45.2
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 3.4e-37 159.5 217 46.1
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 3.4e-37 159.5 242 43.8
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 3.4e-37 159.5 226 44.2
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 4.4e-37 159.1 218 45.0
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 4.4e-37 159.1 227 44.9
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 5.7e-37 158.7 214 45.3
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 5.7e-37 158.7 218 45.4
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 9.7e-37 157.9 231 43.7
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 1.3e-36 157.5 221 44.3
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 1.7e-36 157.1 216 44.0
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 1.7e-36 157.1 235 42.6
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 1.7e-36 157.1 227 43.6
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 2.2e-36 156.8 217 45.2
Sabra01G0130600 Salix brachista HOM05D002316 ORTHO05D002280 2.2e-36 156.8 217 45.2
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 2.8e-36 156.4 224 44.2
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 2.8e-36 156.4 219 46.6
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 3.7e-36 156.0 220 45.0
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 3.7e-36 156.0 224 44.2
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 6.3e-36 155.2 231 43.7
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 8.3e-36 154.8 228 44.3
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 8.3e-36 154.8 225 44.9
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 8.3e-36 154.8 224 43.3
Cfa003455 Carpinus fangiana HOM05D002316 ORTHO05D002280 8.3e-36 154.8 245 43.7
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 8.3e-36 154.8 215 44.7
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 8.3e-36 154.8 219 43.8
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 8.3e-36 154.8 218 43.1
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 1.4e-35 154.1 225 43.1
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 1.4e-35 154.1 218 43.1
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 1.4e-35 154.1 228 43.0
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 1.8e-35 153.7 218 44.0
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 1.8e-35 153.7 221 44.3
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 2.4e-35 153.3 215 43.3
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 3.1e-35 152.9 226 43.4
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 4.1e-35 152.5 235 41.7
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 5.3e-35 152.1 218 44.0
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 7.0e-35 151.8 228 43.9
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 7.0e-35 151.8 231 41.1
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 1.2e-34 151.0 241 42.3
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 2.0e-34 150.2 227 43.2
TAR375G0959 Trochodendron aralioides HOM05D002316 ORTHO05D002280 2.0e-34 150.2 201 48.8
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 2.7e-34 149.8 227 43.2
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 2.7e-34 149.8 227 43.2
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 2.7e-34 149.8 227 43.2
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 3.5e-34 149.4 217 43.8
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 4.5e-34 149.1 248 39.1
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 4.5e-34 149.1 219 44.3
Ca_09566_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 5.9e-34 148.7 230 40.9
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 7.7e-34 148.3 226 43.4
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 1.0e-33 147.9 218 43.1
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 1.0e-33 147.9 218 45.9
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 1.3e-33 147.5 229 41.9
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 2.2e-33 146.7 214 43.9
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 2.9e-33 146.4 219 40.6
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 2.9e-33 146.4 214 43.0
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 2.9e-33 146.4 216 41.2
Eucgr.I02167 Eucalyptus grandis HOM05D002316 ORTHO05D002280 8.5e-33 144.8 229 41.0
DCAR_016087 Daucus carota HOM05D002316 ORTHO05D002280 1.5e-32 144.1 203 44.8
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 2.5e-32 143.3 221 42.1
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 3.2e-32 142.9 225 40.4
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 4.2e-32 142.5 246 42.3
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 5.5e-32 142.1 214 43.0
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 7.2e-32 141.7 226 42.0
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 1.6e-31 140.6 240 42.5
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 2.1e-31 140.2 230 43.0
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 2.3e-30 136.7 243 40.3
arahy.Tifrunner.gnm1.ann1.7Q31U7 Arachis hypogaea HOM05D002316 ORTHO05D002280 2.3e-30 136.7 203 42.9
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.5e-29 134.0 229 40.2
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 2.0e-29 133.7 214 39.7
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 2.6e-29 133.3 214 39.7
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 3.4e-29 132.9 220 42.7
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 4.4e-29 132.5 218 40.8
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 4.4e-29 132.5 223 40.8
HPP92_024371 Vanilla planifolia HOM05D002316 ORTHO05D002280 5.7e-29 132.1 214 39.7
AUR62003176 Chenopodium quinoa HOM05D002316 ORTHO05D002280 7.5e-29 131.7 191 42.9
AUR62007994 Chenopodium quinoa HOM05D002316 ORTHO05D002280 1.3e-28 131.0 191 43.5
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 6.3e-28 128.6 222 40.5
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 8.3e-28 128.3 229 41.0
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 1.4e-27 127.5 226 39.4
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 2.4e-27 126.7 150 46.0
TAR624G0517 Trochodendron aralioides HOM05D002316 ORTHO05D002280 2.4e-27 126.7 204 40.2
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 4.1e-27 125.9 118 55.9
CSS0010846 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 4.5e-26 122.5 108 57.4
CSS0037592 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 4.5e-26 122.5 108 57.4
CSS0001569 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.3e-25 120.9 107 57.0
CSS0007790 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.7e-25 120.6 109 56.0
Hund18630 Selenicereus undatus HOM05D002316 ORTHO05D002280 2.3e-25 120.2 230 37.8
SEGI_28906 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 3.8e-25 119.4 214 37.9
arahy.Tifrunner.gnm1.ann1.RGSX4D Arachis hypogaea HOM05D002316 ORTHO05D002280 1.0e-22 111.3 122 49.2
arahy.Tifrunner.gnm1.ann1.3AJ3RF Arachis hypogaea HOM05D002316 ORTHO05D002280 1.4e-22 110.9 134 47.0
CDE05G3243 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 2.6e-21 106.7 139 46.0
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 3.4e-21 106.3 107 51.4
vmacro18773 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 3.4e-21 106.3 113 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 4.1e-19 99.4 226 35.0
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 9.2e-19 98.2 225 32.9
arahy.Tifrunner.gnm1.ann1.L7TQPJ Arachis hypogaea HOM05D002316 ORTHO05D002280 1.0e-17 94.7 135 42.2
Sed0007223 Sechium edule HOM05D002316 ORTHO05D002280 2.9e-17 93.2 215 37.2
CSS0023276 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 6.6e-17 92.0 88 53.4
SEGI_23297 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 1.1e-16 91.3 230 31.3
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 3.6e-15 86.3 122 41.8
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 1.4e-14 84.3 278 29.1
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 2.6e-13 80.1 179 35.8
Lj9C539G6 Lonicera japonica HOM05D002316 ORTHO05D002280 5.4e-11 72.4 71 49.3
arahy.Tifrunner.gnm1.ann1.VE80E0 Arachis hypogaea HOM05D002316 ORTHO05D002280 6.0e-10 68.9 117 41.0
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 5.0e-09 65.9 214 29.9
Nitab4.5_0005440g0080 Nicotiana tabacum HOM05D002316 ORTHO05D002280 4.3e-08 62.8 93 32.3
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 5.6e-08 62.4 78 43.6
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 1.2e-07 61.2 263 25.1
CBR_g30616 Chara braunii HOM05D002316 ORTHO05D002280 3.6e-07 59.7 118 30.5
CARHR043490 Cardamine hirsuta HOM05D002316 ORTHO05D002280 1.4e-06 57.8 75 40.0
AT1G53250 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 5.2e-06 55.8 82 36.6


User provided reference genes

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