Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0033611 Helianthus annuus HOM05D008438 ORTHO05D008827 0.0e+00 1373.6 716 100.0
HanXRQChr04g0100031 Helianthus annuus HOM05D008438 ORTHO05D008827 2.9e-177 626.3 752 51.6
ECA247G0974 Erigeron canadensis HOM05D008438 ORTHO05D008827 6.9e-139 498.8 867 41.1
Lsat_1_v5_gn_1_30821 Lactuca sativa HOM05D008438 ORTHO05D008827 2.1e-71 274.6 672 34.1
Lsat_1_v5_gn_5_190720 Lactuca sativa HOM05D000236 ORTHO05D008827 2.4e-30 138.3 240 42.9
Lsat_1_v5_gn_1_113521 Lactuca sativa HOM05D000236 ORTHO05D000192 5.8e-29 133.7 205 45.4
Lsat_1_v5_gn_8_151500 Lactuca sativa HOM05D000236 ORTHO05D000192 5.8e-29 133.7 205 45.4
Lsat_1_v5_gn_6_57480 Lactuca sativa HOM05D008438 ORTHO05D008827 1.4e-27 129.0 238 40.8
Lsat_1_v5_gn_7_60980 Lactuca sativa HOM05D008438 ORTHO05D008827 1.2e-26 125.9 206 42.2
Hma1.2p1_1914F.1_g307390 Hydrangea macrophylla HOM05D008438 ORTHO05D008827 1.6e-26 125.6 224 36.2
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 3.5e-26 124.4 90 58.9
MSTRG.22807 Avicennia marina HOM05D008438 ORTHO05D008827 4.6e-26 124.0 349 33.0
unitig_52.g17481 Utricularia gibba HOM05D008438 ORTHO05D008827 3.0e-25 121.3 90 57.8
Migut.I00674 Erythranthe guttata HOM05D008438 ORTHO05D008827 1.9e-24 118.6 220 37.7
Actinidia08936 Actinidia chinensis HOM05D017379 ORTHO05D008827 2.5e-24 118.2 172 41.3
Cc04_g05290 Coffea canephora HOM05D008438 ORTHO05D008827 2.5e-24 118.2 676 24.4
Rhsim12G0185500 Rhododendron simsii HOM05D017379 ORTHO05D008827 5.6e-24 117.1 70 68.6
GSVIVG01016106001 Vitis vinifera HOM05D008438 ORTHO05D008827 1.3e-23 115.9 70 67.1
SalBow7G4248 Salvia bowleyana HOM05D008438 ORTHO05D008827 1.6e-23 115.5 88 58.0
Glyma.13G371300 Glycine max HOM05D022716 ORTHO05D008827 2.1e-23 115.2 252 34.1
Aqoxy7G03345 Aquilegia oxysepala HOM05D008438 ORTHO05D008827 3.6e-23 114.4 137 43.8
AUR62032995 Chenopodium quinoa HOM05D032589 ORTHO05D008827 1.4e-22 112.5 84 59.5
Oeu004554.3 Olea europaea HOM05D008438 ORTHO05D008827 2.4e-22 111.7 61 73.8
SGA_v2.0_scaffold5G02798 Striga asiatica HOM05D008438 ORTHO05D008827 2.4e-22 111.7 581 27.7
Actinidia18261 Actinidia chinensis HOM05D017379 ORTHO05D008827 3.1e-22 111.3 198 32.8
Glyma.15G002400 Glycine max HOM05D022716 ORTHO05D008827 1.5e-21 109.0 91 54.9
Sed0012806 Sechium edule HOM05D008438 ORTHO05D008827 2.0e-21 108.6 87 56.3
Lj3g0015243 Lotus japonicus HOM05D022716 ORTHO05D008827 2.6e-21 108.2 87 55.2
Duzib235G0641 Durio zibethinus HOM05D032892 ORTHO05D008827 3.4e-21 107.8 64 71.9
Nitab4.5_0004738g0100 Nicotiana tabacum HOM05D008438 ORTHO05D008827 4.5e-21 107.5 90 54.4
Haze_16688 Corylus avellana HOM05D008438 ORTHO05D008827 5.8e-21 107.1 90 53.3
Lsat_1_v5_gn_4_132640 Lactuca sativa HOM05D008438 ORTHO05D008827 5.8e-21 107.1 153 43.1
Potri.001G042000 Populus trichocarpa HOM05D008438 ORTHO05D008827 5.8e-21 107.1 81 55.6
CsaV3_7G031700 Cucumis sativus L. HOM05D008438 ORTHO05D008827 9.9e-21 106.3 76 59.2
MD17G1226300 Malus domestica HOM05D015689 ORTHO05D008827 9.9e-21 106.3 66 68.2
Sc10g0008430 Simmondsia chinensis HOM05D008438 ORTHO05D008827 1.3e-20 105.9 66 65.2
Manes.11G069100 Manihot esculenta HOM05D008438 ORTHO05D008827 1.7e-20 105.5 85 51.8
PGSC0003DMG400014154 Solanum tuberosum HOM05D008438 ORTHO05D008827 1.7e-20 105.5 320 27.2
Manes.04G100800 Manihot esculenta HOM05D008438 ORTHO05D008827 2.2e-20 105.1 155 39.4
Sabra01G0028800 Salix brachista HOM05D008438 ORTHO05D008827 2.2e-20 105.1 91 51.6
MELO3C023487.2 Cucumis melo HOM05D008438 ORTHO05D008827 2.9e-20 104.8 76 57.9
Prupe.3G103500 Prunus persica HOM05D015689 ORTHO05D008827 4.9e-20 104.0 65 64.6
RcHm_v2.0_Chr2g0132351 Rosa chinensis HOM05D015689 ORTHO05D008827 6.4e-20 103.6 68 64.7
SGA_v2.0_scaffold37G14678 Striga asiatica HOM05D008438 ORTHO05D008827 6.4e-20 103.6 66 62.1
TWI18G0426 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 6.4e-20 103.6 66 69.7
FvH4_6g28290 Fragaria vesca HOM05D015689 ORTHO05D008827 1.1e-19 102.8 110 48.2
FAN09G3978 Fragaria x ananassa HOM05D015689 ORTHO05D008827 1.1e-19 102.8 110 48.2
FAN14G1731 Fragaria x ananassa HOM05D015689 ORTHO05D008827 1.1e-19 102.8 110 48.2
FAN02G3655 Fragaria x ananassa HOM05D015689 ORTHO05D008827 1.4e-19 102.4 110 48.2
Phvul.005G183500 Phaseolus vulgaris HOM05D022716 ORTHO05D008827 1.4e-19 102.4 182 35.2
Hund12562 Selenicereus undatus HOM05D008438 ORTHO05D008827 1.9e-19 102.1 88 53.4
CAN.G1008.6 Capsicum annuum HOM05D008438 ORTHO05D008827 2.4e-19 101.7 626 24.3
COL.COLO4_26771 Corchorus olitorius HOM05D032892 ORTHO05D008827 2.4e-19 101.7 81 60.5
VMungo1080G1089 Vigna mungo HOM05D022716 ORTHO05D008827 9.3e-19 99.8 270 29.6
TAR625G0030 Trochodendron aralioides HOM05D008438 ORTHO05D008827 2.7e-18 98.2 61 68.9
EL10Ac8g19397 Beta vulgaris HOM05D032589 ORTHO05D008827 3.5e-18 97.8 69 60.9
CANSAT56G0832 Cannabis sativa HOM05D008438 ORTHO05D008827 2.3e-17 95.1 71 53.5
Solyc03g117660.4 Solanum lycopersicum HOM05D008438 ORTHO05D008827 2.3e-17 95.1 318 26.1
Peaxi162Scf00314g01044 Petunia axillaris HOM05D008438 ORTHO05D008827 3.9e-17 94.4 707 24.6
Sopen03g036570 Solanum pennellii HOM05D008438 ORTHO05D008827 6.7e-17 93.6 383 24.8
Eucgr.F03984 Eucalyptus grandis HOM05D008438 ORTHO05D008827 1.1e-16 92.8 87 49.4
Ciclev10026162m.g Citrus clementina HOM05D008438 ORTHO05D008827 2.5e-16 91.7 196 33.7
PSO782G4356 Papaver somniferum HOM05D008438 ORTHO05D008827 7.4e-16 90.1 73 46.6
PSO063G1826 Papaver somniferum HOM05D008438 ORTHO05D008827 1.6e-15 89.0 73 46.6
ClCG09G003500 Citrullus lanatus HOM05D008438 ORTHO05D008827 2.4e-14 85.1 555 22.2
Nitab4.5_0002700g0070 Nicotiana tabacum HOM05D008438 ORTHO05D008827 3.4e-13 81.3 720 22.9
Nn8g40077 Nelumbo nucifera HOM05D008438 ORTHO05D008827 2.1e-10 72.0 98 39.8
Peaxi162Scf00563g00416 Petunia axillaris HOM05D022295 ORTHO05D008827 2.7e-10 71.6 65 49.2
Sabra06G0137500 Salix brachista HOM05D037217 ORTHO05D008827 2.7e-10 71.6 63 49.2
Nitab4.5_0006744g0030 Nicotiana tabacum HOM05D022295 ORTHO05D008827 3.0e-09 68.2 81 42.0
Cfa020785 Carpinus fangiana HOM05D019529 ORTHO05D008827 1.1e-08 66.2 76 40.8
Dinv42819 Davidia involucrata HOM05D019090 ORTHO05D008827 1.5e-08 65.9 66 45.5
Dinv43281 Davidia involucrata HOM05D019090 ORTHO05D008827 1.5e-08 65.9 66 45.5
Nitab4.5_0001036g0130 Nicotiana tabacum HOM05D022295 ORTHO05D008827 1.9e-08 65.5 81 40.7
Actinidia38661 Actinidia chinensis HOM05D008438 ORTHO05D008827 2.5e-08 65.1 82 36.6
TWI32G0905 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 2.5e-08 65.1 61 49.2
TWI34G1835 Tripterygium wilfordii HOM05D008438 ORTHO05D008827 4.3e-08 64.3 60 48.3
Potri.006G180600 Populus trichocarpa HOM05D037217 ORTHO05D008827 9.6e-08 63.2 61 44.3
Actinidia27880 Actinidia chinensis HOM05D001507 ORTHO05D002108 6.2e-07 60.5 75 40.0
Solyc07g005980.2 Solanum lycopersicum HOM05D022295 ORTHO05D008827 1.1e-06 59.7 64 40.6
Sabra18G0088400 Salix brachista HOM05D037217 ORTHO05D008827 1.8e-06 58.9 67 41.8
Sopen07g002110 Solanum pennellii HOM05D022295 ORTHO05D008827 1.8e-06 58.9 64 40.6
TAR315G0003 Trochodendron aralioides HOM05D001860 ORTHO05D004239 3.1e-06 58.2 69 39.1
Glyma.01G050400 Glycine max HOM05D001860 ORTHO05D004239 6.9e-06 57.0 62 38.7
Glyma.02G109200 Glycine max HOM05D001860 ORTHO05D004239 6.9e-06 57.0 62 38.7
Thhalv10000174m.g Eutrema salsugineum HOM05D001507 ORTHO05D002108 9.0e-06 56.6 64 39.1
QL02p094184 Quercus lobata HOM05D019529 ORTHO05D008827 9.0e-06 56.6 64 45.3


User provided reference genes

Program Settings