Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 8.9e-232 806.6 413 100.0
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 5.7e-162 574.7 345 83.5
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.7e-161 573.2 345 82.0
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 4.7e-140 501.9 334 77.5
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 8.0e-132 474.6 347 69.7
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.8e-131 473.4 346 68.5
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.8e-131 473.4 345 69.9
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.0e-131 472.6 346 69.7
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 8.8e-131 471.1 344 68.3
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 4.4e-130 468.8 327 70.0
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 7.5e-130 468.0 313 73.8
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 7.5e-130 468.0 345 68.4
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.3e-129 467.2 346 67.9
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.7e-129 466.8 346 67.9
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 4.9e-129 465.3 342 67.8
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-128 464.2 346 67.6
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.1e-128 462.6 304 74.0
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.1e-128 462.2 304 73.7
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 5.4e-128 461.8 358 66.8
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 7.0e-128 461.5 345 68.1
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 9.2e-128 461.1 342 66.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-127 460.7 361 67.0
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.2e-127 460.7 344 66.9
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.2e-127 460.7 276 80.8
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.0e-127 459.9 344 67.4
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 3.5e-127 459.1 334 69.8
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 4.5e-127 458.8 345 67.0
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 4.5e-127 458.8 318 73.9
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.9e-127 458.4 304 73.0
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 7.7e-127 458.0 304 73.7
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 7.7e-127 458.0 328 70.4
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.0e-126 457.6 357 67.8
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.3e-126 457.2 312 73.7
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 1.7e-126 456.8 350 66.9
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.7e-126 456.8 305 72.5
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 2.3e-126 456.4 312 73.7
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.8e-126 455.7 348 66.4
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.8e-126 455.7 348 67.2
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 5.0e-126 455.3 319 71.5
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 5.0e-126 455.3 288 77.4
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 6.6e-126 454.9 350 66.9
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 6.6e-126 454.9 277 80.1
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 6.6e-126 454.9 304 74.3
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 8.6e-126 454.5 330 68.5
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.1e-125 454.1 345 66.1
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.5e-125 453.8 348 66.7
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.5e-125 453.8 352 66.5
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.9e-125 453.4 348 66.7
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 2.5e-125 453.0 343 66.2
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 3.3e-125 452.6 309 71.8
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 3.3e-125 452.6 304 75.3
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 3.3e-125 452.6 307 72.0
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 4.3e-125 452.2 278 79.9
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 4.3e-125 452.2 363 65.8
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 4.3e-125 452.2 343 66.8
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 5.6e-125 451.8 329 68.1
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 5.6e-125 451.8 276 80.4
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 5.6e-125 451.8 312 72.8
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 5.6e-125 451.8 278 78.4
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 1.2e-124 450.7 327 70.6
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.8e-124 449.5 345 65.5
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.8e-124 449.5 346 66.8
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 3.6e-124 449.1 276 79.0
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.7e-124 448.7 283 77.0
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 6.1e-124 448.4 342 66.7
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 8.0e-124 448.0 335 67.5
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.0e-123 447.6 343 66.8
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.0e-123 447.6 345 67.2
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 1.4e-123 447.2 335 67.2
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.8e-123 446.8 295 74.6
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 3.0e-123 446.0 274 77.0
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 4.0e-123 445.7 341 65.4
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 6.8e-123 444.9 284 77.1
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.5e-122 443.7 351 66.1
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.5e-122 443.7 400 59.2
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 2.6e-122 443.0 276 78.3
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.6e-122 443.0 348 65.8
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 3.4e-122 442.6 346 65.3
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 5.7e-122 441.8 276 77.2
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.5e-122 441.4 297 72.7
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 1.7e-121 440.3 354 65.5
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.2e-121 439.9 351 65.2
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.9e-121 439.5 276 77.5
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.9e-121 439.5 275 76.7
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 3.7e-121 439.1 276 76.4
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.4e-121 438.3 300 71.7
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 8.3e-121 438.0 276 76.1
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.4e-120 437.2 276 76.1
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 4.1e-120 435.6 350 64.0
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 4.1e-120 435.6 330 67.6
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.1e-120 435.6 277 75.8
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 5.4e-120 435.3 276 76.4
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 7.0e-120 434.9 327 67.9
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 7.0e-120 434.9 327 67.9
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 7.0e-120 434.9 327 65.7
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 7.0e-120 434.9 327 67.9
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 9.2e-120 434.5 276 75.7
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.2e-119 434.1 276 74.6
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.6e-119 433.7 274 76.6
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.6e-119 433.7 276 75.4
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.0e-119 433.3 276 75.7
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 2.0e-119 433.3 330 67.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 3.5e-119 432.6 276 75.4
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 3.5e-119 432.6 265 80.0
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 4.6e-119 432.2 276 75.7
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 7.8e-119 431.4 327 67.3
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 1.3e-118 430.6 358 62.6
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.3e-118 430.6 323 66.9
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.3e-118 429.9 324 66.7
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 5.0e-118 428.7 331 64.7
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 6.6e-118 428.3 358 62.3
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.6e-118 427.9 345 64.1
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 8.6e-118 427.9 305 67.5
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.5e-117 427.2 309 68.3
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.5e-117 426.4 276 73.6
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 2.5e-117 426.4 341 64.5
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 2.1e-116 423.3 346 62.4
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 3.6e-116 422.5 326 66.0
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 8.0e-116 421.4 272 74.6
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.4e-115 420.6 278 71.2
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.8e-115 420.2 362 62.7
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 2.3e-115 419.9 332 67.2
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 2.0e-114 416.8 338 63.3
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 9.8e-114 414.5 274 72.6
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.2e-113 413.3 278 73.4
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 7.8e-111 404.8 313 65.5
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.3e-110 404.1 318 61.6
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 3.9e-110 402.5 306 66.7
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 4.3e-109 399.1 315 65.4
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.2e-108 397.5 283 67.8
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 8.1e-108 394.8 350 61.1
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.1e-107 394.4 288 68.8
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.5e-106 390.6 309 66.3
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 2.4e-104 383.3 332 61.7
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 7.1e-104 381.7 309 64.4
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 9.5e-101 371.3 322 56.2
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.3e-97 360.9 243 73.3
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 4.9e-97 359.0 277 61.0
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 2.1e-95 353.6 276 61.2
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.1e-93 347.8 313 55.3
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 3.1e-91 339.7 186 88.7
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 1.3e-84 317.8 261 64.4
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.1e-83 314.7 278 56.5
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 3.1e-83 313.2 282 57.8
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 2.2e-81 307.0 281 52.3
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.3e-77 292.7 189 76.2
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 7.4e-77 292.0 188 77.7
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 3.6e-76 289.7 289 54.3
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.8e-67 260.8 218 63.8
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 6.9e-67 258.8 174 76.4
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.1e-64 248.8 238 59.2
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.9e-57 226.9 159 71.1
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.0e-57 226.1 224 58.0
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.5e-56 223.8 123 86.2
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 5.1e-54 216.1 175 65.7
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 9.7e-53 211.8 159 62.3
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 7.2e-48 195.7 253 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.8e-44 183.7 183 51.4
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.4e-37 159.8 138 58.7
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 9.7e-37 158.7 90 81.1
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.0e-34 151.0 280 33.6
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 5.5e-32 142.9 77 88.3
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.0e-25 122.1 75 80.0
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 3.2e-24 117.1 80 73.8
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 4.7e-23 113.2 89 62.9
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.4e-22 111.7 108 51.9
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 2.0e-21 107.8 152 45.4
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.8e-20 104.0 66 80.3
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.9e-16 91.3 84 54.8
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 2.7e-10 70.9 179 27.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.0e-09 68.9 94 43.6
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 5.2e-06 56.6 59 45.8
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 5.2e-06 56.6 29 89.7


User provided reference genes

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