Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032741 Helianthus annuus HOM05D000094 ORTHO05D002388 5.5e-59 231.9 253 100.0
HanXRQChr14g0462251 Helianthus annuus HOM05D000094 ORTHO05D002388 2.2e-23 113.6 53 100.0
ECA238G3467 Erigeron canadensis HOM05D000094 ORTHO05D002388 6.0e-21 105.5 53 92.5
HanXRQChr09g0253741 Helianthus annuus HOM05D000094 ORTHO05D002388 2.8e-18 96.7 52 84.6
Lsat_1_v5_gn_0_29921 Lactuca sativa HOM05D000094 ORTHO05D002388 1.4e-17 94.4 52 80.8
Lsat_1_v5_gn_2_133981 Lactuca sativa HOM05D000094 ORTHO05D002388 6.8e-17 92.0 51 80.4
ECA232G0360 Erigeron canadensis HOM05D000094 ORTHO05D002388 1.2e-16 91.3 52 78.8
Lj1C994T10 Lonicera japonica HOM05D000094 ORTHO05D002388 5.8e-16 89.0 51 72.5
vmacro09844 Vaccinium macrocarpon HOM05D000094 ORTHO05D002388 9.9e-16 88.2 52 75.0
Actinidia03114 Actinidia chinensis HOM05D000094 ORTHO05D002388 1.7e-15 87.4 52 73.1
DCAR_018185 Daucus carota HOM05D000094 ORTHO05D002388 1.7e-15 87.4 52 71.2
Sed0003692 Sechium edule HOM05D000094 ORTHO05D002388 1.7e-15 87.4 52 73.1
COL.COLO4_14282 Corchorus olitorius HOM05D000094 ORTHO05D034865 2.2e-15 87.0 50 74.0
PSO782G0366 Papaver somniferum HOM05D000094 ORTHO05D002388 4.9e-15 85.9 52 69.2
PSO478G3366 Papaver somniferum HOM05D000094 ORTHO05D002388 6.4e-15 85.5 49 71.4
Aqoxy7G00400 Aquilegia oxysepala HOM05D000094 ORTHO05D002388 8.4e-15 85.1 51 68.6
Migut.F00358 Erythranthe guttata HOM05D000094 ORTHO05D002388 1.4e-14 84.3 49 75.5
Gorai.004G120000 Gossypium raimondii HOM05D000094 ORTHO05D002388 2.4e-14 83.6 49 71.4
Rhsim09G0197300 Rhododendron simsii HOM05D000094 ORTHO05D002388 2.4e-14 83.6 52 67.3
Cc02_g03230 Coffea canephora HOM05D000094 ORTHO05D002388 9.2e-14 81.6 47 76.6
TWI14G0045 Tripterygium wilfordii HOM05D000094 ORTHO05D002388 9.2e-14 81.6 52 63.5
Duzib205G1047 Durio zibethinus HOM05D000094 ORTHO05D002388 1.2e-13 81.3 51 68.6
SHI13801 Sapria himalayana HOM05D000094 ORTHO05D002388 1.2e-13 81.3 52 71.2
Eucgr.A02805 Eucalyptus grandis HOM05D000094 ORTHO05D002388 1.6e-13 80.9 52 65.4
Thecc.03G172900 Theobroma cacao HOM05D000094 ORTHO05D002388 1.6e-13 80.9 53 64.2
SalBow4G0307 Salvia bowleyana HOM05D000094 ORTHO05D002388 2.7e-13 80.1 48 75.0
SalBow4G3185 Salvia bowleyana HOM05D000094 ORTHO05D002388 2.7e-13 80.1 48 75.0
TWI39G1282 Tripterygium wilfordii HOM05D000094 ORTHO05D002388 2.7e-13 80.1 49 65.3
Psat6g205600 Pisum sativum HOM05D000129 ORTHO05D030445 4.6e-13 79.3 52 65.4
MBI04_g04726_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D002388 6.0e-13 79.0 47 66.0
Lalb_Chr02g0140951 Lupinus albus HOM05D000094 ORTHO05D002388 7.8e-13 78.6 51 70.6
Gohir.A09G180200 Gossypium hirsutum HOM05D000094 ORTHO05D002388 1.0e-12 78.2 48 68.8
Oeu040515.1 Olea europaea HOM05D000094 ORTHO05D002388 1.0e-12 78.2 50 68.0
Manes.06G145700 Manihot esculenta HOM05D000094 ORTHO05D002388 1.3e-12 77.8 49 69.4
CiPaw.04G065900 Carya illinoinensis HOM05D000094 ORTHO05D002388 3.9e-12 76.3 52 63.5
Haze_13732 Corylus avellana HOM05D000094 ORTHO05D002388 5.1e-12 75.9 49 65.3
Thhalv10012465m.g Eutrema salsugineum HOM05D000094 ORTHO05D002388 5.1e-12 75.9 52 59.6
BcaC06g32455 Brassica carinata HOM05D000094 ORTHO05D002388 6.6e-12 75.5 47 63.8
Atru.chr1.486 Acer truncatum HOM05D000094 ORTHO05D002388 8.7e-12 75.1 49 61.2
Cfa008299 Carpinus fangiana HOM05D000094 ORTHO05D002388 8.7e-12 75.1 52 61.5
QL09p014617 Quercus lobata HOM05D000094 ORTHO05D002388 1.1e-11 74.7 52 59.6
Aa31LG3G19100 Aethionema arabicum HOM05D000094 ORTHO05D002388 1.5e-11 74.3 52 57.7
CANSAT21G1826 Cannabis sativa HOM05D000094 ORTHO05D002388 2.5e-11 73.6 46 67.4
ClCG05G007920 Citrullus lanatus HOM05D000094 ORTHO05D002388 2.5e-11 73.6 52 65.4
Carub.0006s0624 Capsella rubella HOM05D000094 ORTHO05D002388 3.3e-11 73.2 52 57.7
CDE07G1342 Ceratophyllum demersum HOM05D000094 ORTHO05D002388 3.3e-11 73.2 49 57.1
THA.LOC104818278 Tarenaya hassleriana HOM05D000094 ORTHO05D002388 3.3e-11 73.2 52 59.6
MD01G1198500 Malus domestica HOM05D000094 ORTHO05D002388 4.3e-11 72.8 52 57.7
THA.LOC104801837 Tarenaya hassleriana HOM05D000094 ORTHO05D002388 4.3e-11 72.8 52 59.6
MSTRG.27127 Avicennia marina HOM05D000094 ORTHO05D002388 9.6e-11 71.6 53 62.3
CAN.G856.5 Capsicum annuum HOM05D000094 ORTHO05D002388 9.6e-11 71.6 52 57.7
FAN03G1247 Fragaria x ananassa HOM05D000094 ORTHO05D002388 1.2e-10 71.2 52 57.7
CiPaw.03G104200 Carya illinoinensis HOM05D000094 ORTHO05D002388 1.6e-10 70.9 52 57.7
FAN01G2743 Fragaria x ananassa HOM05D000094 ORTHO05D002388 1.6e-10 70.9 49 59.2
FAN10G0047 Fragaria x ananassa HOM05D000094 ORTHO05D002388 2.1e-10 70.5 52 55.8
A10p29040 Brassica napus HOM05D000094 ORTHO05D002388 2.8e-10 70.1 49 57.1
BraA10t44952Z Brassica rapa HOM05D000094 ORTHO05D002388 2.8e-10 70.1 49 57.1
FvH4_7g29180 Fragaria vesca HOM05D000094 ORTHO05D002388 2.8e-10 70.1 52 55.8
FAN06G2413 Fragaria x ananassa HOM05D000094 ORTHO05D002388 2.8e-10 70.1 52 55.8
FAN06G5003 Fragaria x ananassa HOM05D000094 ORTHO05D002388 2.8e-10 70.1 52 55.8
C09p69400 Brassica napus HOM05D000094 ORTHO05D002388 6.2e-10 68.9 47 59.6
BolC9t59684H Brassica oleracea HOM05D000094 ORTHO05D002388 6.2e-10 68.9 47 59.6
Peaxi162Scf00915g00011 Petunia axillaris HOM05D000094 ORTHO05D002388 6.2e-10 68.9 51 60.8
MSTRG.8751 Avicennia marina HOM05D000094 ORTHO05D002388 8.1e-10 68.6 47 63.8
TAR633G0483 Trochodendron aralioides HOM05D000094 ORTHO05D002388 1.4e-09 67.8 46 58.7
FAN03G0530 Fragaria x ananassa HOM05D000094 ORTHO05D002388 1.8e-09 67.4 52 53.8
MD07G1266400 Malus domestica HOM05D000094 ORTHO05D002388 2.4e-09 67.0 49 53.1
CSS0008985 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D002388 3.1e-09 66.6 49 59.2
CSS0034134 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D002388 3.1e-09 66.6 49 59.2
MELO3C006890.2 Cucumis melo HOM05D000094 ORTHO05D002388 5.2e-09 65.9 49 61.2
CsaV3_3G016940 Cucumis sativus L. HOM05D000094 ORTHO05D002388 5.2e-09 65.9 49 61.2
Dinv35197 Davidia involucrata HOM05D000094 ORTHO05D012275 5.2e-09 65.9 49 59.2
Nitab4.5_0001508g0090 Nicotiana tabacum HOM05D000094 ORTHO05D002388 6.9e-09 65.5 49 57.1
Nitab4.5_0000716g0270 Nicotiana tabacum HOM05D000094 ORTHO05D002388 9.0e-09 65.1 48 58.3
PGSC0003DMG400014281 Solanum tuberosum HOM05D000094 ORTHO05D002388 9.0e-09 65.1 47 59.6
Glyma.10G237900 Glycine max HOM05D000094 ORTHO05D002388 1.5e-08 64.3 49 57.1
Solyc03g026040.4 Solanum lycopersicum HOM05D000094 ORTHO05D002388 2.0e-08 63.9 48 56.2
Sopen03g004870 Solanum pennellii HOM05D000094 ORTHO05D002388 2.6e-08 63.5 47 57.4
SEGI_18035 Sequoiadendron giganteum HOM05D000094 ORTHO05D002388 3.4e-08 63.2 47 55.3
Ciclev10004265m.g Citrus clementina HOM05D000094 ORTHO05D002388 7.6e-08 62.0 52 51.9
ATR0680G413 Amborella trichopoda HOM05D000094 ORTHO05D002388 9.9e-08 61.6 49 55.1
Aqoxy1G01175 Aquilegia oxysepala HOM05D000094 ORTHO05D002388 9.9e-08 61.6 46 50.0
SGA_v2.0_scaffold221G42717 Striga asiatica HOM05D000094 ORTHO05D002388 9.9e-08 61.6 53 54.7
Nn2g11555 Nelumbo nucifera HOM05D000094 ORTHO05D002388 1.3e-07 61.2 46 50.0
Atru.chr8.1832 Acer truncatum HOM05D000094 ORTHO05D002388 2.9e-07 60.1 46 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3189 Anthoceros agrestis HOM05D000094 ORTHO05D002388 3.8e-07 59.7 41 63.4
AUR62033214 Chenopodium quinoa HOM05D000094 ORTHO05D002388 3.8e-07 59.7 46 45.7
Migut.G01136 Erythranthe guttata HOM05D000094 ORTHO05D002388 4.9e-07 59.3 45 51.1
Pp3c17_21540 Physcomitrium patens HOM05D000094 ORTHO05D002388 4.9e-07 59.3 40 60.0
Sabra15G0151700 Salix brachista HOM05D000094 ORTHO05D002388 4.9e-07 59.3 52 55.8
EL10Ac3g07393 Beta vulgaris HOM05D000094 ORTHO05D002388 6.4e-07 58.9 46 47.8
PGR042G0627 Punica granatum HOM05D000094 ORTHO05D002388 6.4e-07 58.9 52 55.8
AUR62021297 Chenopodium quinoa HOM05D000094 ORTHO05D002388 8.4e-07 58.5 46 45.7
GSVIVG01025718001 Vitis vinifera HOM05D000094 ORTHO05D017818 8.4e-07 58.5 46 50.0
Mapoly0011s0213 Marchantia polymorpha HOM05D000094 ORTHO05D002388 1.1e-06 58.2 44 52.3
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 1.1e-06 58.2 52 53.8
Pp3c1_16110 Physcomitrium patens HOM05D000094 ORTHO05D319464 1.4e-06 57.8 44 56.8
Potri.015G141200 Populus trichocarpa HOM05D000094 ORTHO05D002388 1.4e-06 57.8 52 53.8
Cpa.g.sc107.30 Carica papaya HOM05D000094 ORTHO05D002388 2.4e-06 57.0 52 48.1
Ca_27403_v3 Cicer arietinum L. HOM05D000094 ORTHO05D002388 2.4e-06 57.0 49 53.1
Lj3C358T0 Lonicera japonica HOM05D000094 ORTHO05D002388 2.4e-06 57.0 45 46.7
AL6G17520 Arabidopsis lyrata HOM05D000094 ORTHO05D002388 3.2e-06 56.6 52 44.2
Prupe.2G292000 Prunus persica HOM05D000094 ORTHO05D002388 3.2e-06 56.6 52 50.0
Medtr1g100787 Medicago truncatula HOM05D000094 ORTHO05D002388 4.2e-06 56.2 52 50.0
Nitab4.5_0006213g0030 Nicotiana tabacum HOM05D000094 ORTHO05D002388 4.2e-06 56.2 44 52.3
SEGI_06180 Sequoiadendron giganteum HOM05D000094 ORTHO05D002388 4.2e-06 56.2 44 45.5
Sc25g0005630 Simmondsia chinensis HOM05D000094 ORTHO05D002388 4.2e-06 56.2 46 47.8
CAN.G710.52 Capsicum annuum HOM05D000094 ORTHO05D002388 5.4e-06 55.8 44 50.0
Glyma.20G156700 Glycine max HOM05D000094 ORTHO05D002388 5.4e-06 55.8 49 51.0
Nitab4.5_0002313g0050 Nicotiana tabacum HOM05D000094 ORTHO05D002388 5.4e-06 55.8 44 52.3
Sabra12G0104300 Salix brachista HOM05D000094 ORTHO05D012275 5.4e-06 55.8 47 55.3
PGSC0003DMG400021622 Solanum tuberosum HOM05D000094 ORTHO05D002388 5.4e-06 55.8 44 50.0
Nn1g09888 Nelumbo nucifera HOM05D000094 ORTHO05D002388 7.1e-06 55.5 44 52.3
Oeu050347.1 Olea europaea HOM05D000094 ORTHO05D002388 7.1e-06 55.5 44 50.0
Potri.012G139000 Populus trichocarpa HOM05D000094 ORTHO05D002388 7.1e-06 55.5 49 53.1
AUR62018484 Chenopodium quinoa HOM05D000094 ORTHO05D002388 9.3e-06 55.1 46 45.7
AUR62020939 Chenopodium quinoa HOM05D000094 ORTHO05D002388 9.3e-06 55.1 46 45.7
Pp3c14_16840 Physcomitrium patens HOM05D000094 ORTHO05D002388 9.3e-06 55.1 44 54.5
TPR.G14332 Trifolium pratense HOM05D000094 ORTHO05D002388 9.3e-06 55.1 49 51.0


User provided reference genes

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