Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 0.0e+00 1214.5 628 100.0
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 0.0e+00 1126.7 629 94.1
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 3.9e-162 575.9 651 52.8
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 7.7e-110 402.1 688 41.1
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 8.5e-101 372.1 602 45.8
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 3.7e-80 303.5 749 34.3
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 8.6e-77 292.4 768 33.3
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 9.5e-76 288.9 733 33.2
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.7e-72 278.1 728 33.4
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.7e-72 278.1 728 33.4
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.6e-70 271.6 899 29.1
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 4.5e-70 270.0 736 33.8
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.3e-69 268.5 827 30.4
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.3e-69 268.5 741 32.0
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.1e-68 265.4 731 32.0
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.9e-68 264.6 680 32.5
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.6e-67 261.5 751 32.2
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.8e-66 258.1 744 32.0
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.2e-65 255.4 839 30.3
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 5.8e-65 253.1 710 32.1
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 7.5e-65 252.7 744 31.9
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 2.9e-64 250.8 699 32.6
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.4e-63 248.4 686 32.9
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 3.2e-63 247.3 713 31.3
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 9.2e-63 245.7 690 32.2
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 7.8e-62 242.7 755 30.7
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 3.0e-61 240.7 701 32.5
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 3.0e-61 240.7 718 31.5
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 6.6e-61 239.6 738 30.8
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 8.6e-61 239.2 718 31.3
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 1.1e-60 238.8 710 32.0
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 5.6e-60 236.5 752 31.2
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 9.5e-60 235.7 713 31.6
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 6.2e-59 233.0 673 31.9
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 1.1e-58 232.3 754 29.2
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 5.8e-57 226.5 743 29.3
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 9.8e-57 225.7 677 32.1
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.2e-55 220.7 684 31.3
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 4.1e-55 220.3 699 31.5
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 4.1e-55 220.3 767 30.0
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.4e-55 219.9 723 31.0
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 7.1e-55 219.5 876 28.7
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.6e-54 218.4 910 28.2
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.7e-54 217.6 814 28.7
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 6.0e-54 216.5 768 29.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.7e-53 214.9 402 37.1
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.3e-53 214.5 728 30.5
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 3.0e-53 214.2 821 27.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 3.0e-53 214.2 722 29.2
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 5.1e-53 213.4 610 31.5
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 6.6e-53 213.0 722 30.6
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 8.6e-53 212.6 705 30.6
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 7.3e-52 209.5 734 30.7
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.6e-51 208.4 828 28.1
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.8e-51 207.6 715 30.1
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 8.1e-51 206.1 711 30.1
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 8.1e-51 206.1 716 30.0
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.0e-50 203.8 654 32.3
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 8.9e-50 202.6 689 31.9
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.2e-49 202.2 664 31.8
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.3e-48 198.7 655 30.8
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.9e-48 197.6 832 26.6
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.7e-48 197.2 650 31.8
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 8.3e-48 196.1 676 29.9
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 4.1e-47 193.7 398 38.2
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.4e-47 193.4 652 31.6
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 9.2e-47 192.6 621 31.2
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 4.6e-46 190.3 692 29.5
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.0e-45 189.1 742 28.3
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.7e-45 188.3 710 29.2
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.0e-45 187.6 779 27.6
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.9e-44 184.9 690 28.4
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.9e-44 184.9 775 28.0
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 5.6e-44 183.3 699 29.5
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.2e-43 182.2 652 29.3
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.1e-42 179.1 849 25.4
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.4e-42 178.7 718 28.0
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.4e-42 177.9 753 28.4
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 8.9e-42 176.0 761 27.5
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 1.2e-41 175.6 583 30.2
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.4e-41 173.7 730 27.5
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 5.8e-41 173.3 719 26.1
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 7.6e-41 172.9 634 30.3
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.7e-40 171.8 738 27.5
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.9e-40 171.0 712 26.7
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.1e-39 169.1 691 28.1
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.4e-39 168.7 761 27.9
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.9e-39 168.3 740 26.6
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.4e-39 167.9 779 26.7
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 5.4e-39 166.8 491 31.2
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 7.1e-39 166.4 721 27.0
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.0e-37 162.5 711 27.0
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 1.0e-37 162.5 679 29.6
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.7e-37 161.8 512 31.1
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 2.3e-37 161.4 853 26.0
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 1.9e-36 158.3 719 25.9
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 3.3e-36 157.5 714 26.5
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 4.3e-36 157.1 651 29.2
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.8e-35 154.5 319 37.3
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 1.1e-34 152.5 771 27.6
HanXRQChr12g0366341 Helianthus annuus HOM05D004831 ORTHO05D003975 5.3e-34 150.2 91 89.0
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.2e-33 149.1 536 28.5
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.5e-33 148.7 896 25.9
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 4.4e-33 147.1 740 26.4
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 7.6e-33 146.4 740 25.8
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 3.8e-32 144.1 694 25.2
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 6.4e-32 143.3 671 28.2
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 6.4e-32 143.3 548 26.8
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 2.1e-30 138.3 732 24.7
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 7.9e-30 136.3 814 26.8
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 8.7e-29 132.9 746 25.7
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.5e-28 132.1 725 27.9
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 4.3e-28 130.6 685 25.5
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 3.1e-26 124.4 933 23.8
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 3.4e-25 120.9 945 23.0
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 8.4e-24 116.3 963 22.2
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 5.4e-23 113.6 195 39.0
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.6e-22 112.1 379 31.1
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 2.1e-22 111.7 393 29.3
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.5e-22 110.9 133 48.9
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 3.0e-21 107.8 505 27.7
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 8.1e-19 99.8 174 36.2
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.2e-17 95.9 248 31.9
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.5e-17 94.0 611 26.5
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.4e-15 89.0 115 43.5
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.4e-15 89.0 121 43.0
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 5.5e-15 87.0 637 25.0
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 9.3e-15 86.3 83 50.6
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.2e-14 85.9 128 38.3
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 2.1e-14 85.1 106 42.5
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 2.7e-14 84.7 161 37.9
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 4.6e-14 84.0 125 40.0
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 4.6e-14 84.0 134 41.0
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.0e-13 82.8 254 29.5
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 5.7e-12 77.0 114 42.1
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 4.8e-11 73.9 646 24.9
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 3.1e-10 71.2 346 30.1
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 1.0e-08 66.2 208 28.4
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 3.8e-08 64.3 336 25.3
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 6.5e-08 63.5 143 32.9
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.4e-07 62.4 142 33.1
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 1.9e-07 62.0 109 40.4
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 7.2e-07 60.1 97 41.2
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 9.3e-07 59.7 286 28.0
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 4.6e-06 57.4 70 44.3


User provided reference genes

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