Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 0.0e+00 1422.5 740 100.0
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 5.0e-310 1067.4 798 73.1
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 2.1e-276 955.7 775 68.6
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 6.7e-230 801.2 842 56.1
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 6.7e-230 801.2 814 57.7
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.9e-225 785.8 824 55.5
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 5.0e-225 785.0 818 54.9
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.1e-224 783.9 787 56.9
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.9e-224 783.1 785 58.0
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.5e-224 781.6 785 58.0
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.2e-223 780.4 818 54.9
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.1e-223 779.6 779 57.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.0e-222 777.3 862 54.6
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 3.0e-222 775.8 780 57.3
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 7.4e-221 771.2 813 56.1
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 7.4e-221 771.2 781 56.6
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 9.7e-221 770.8 862 54.3
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.8e-219 766.5 825 54.5
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-219 766.5 783 56.2
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 6.9e-219 764.6 787 56.7
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 6.9e-219 764.6 816 55.0
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.5e-218 763.5 834 53.0
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.6e-218 762.7 817 54.2
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 4.5e-218 761.9 788 55.8
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.3e-217 760.4 766 56.5
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.5e-217 757.7 750 57.3
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.2e-216 754.6 784 55.7
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.2e-215 753.8 789 55.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.6e-215 753.4 784 56.5
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.7e-215 752.7 781 55.2
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 3.9e-214 748.8 784 54.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 5.1e-214 748.4 805 56.4
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 8.8e-214 747.7 785 56.1
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 4.4e-213 745.3 771 55.6
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 4.4e-213 745.3 776 55.3
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 2.2e-212 743.0 782 54.3
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 6.3e-212 741.5 779 53.7
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.8e-211 740.0 781 54.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.2e-210 737.3 821 53.1
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.6e-210 736.1 788 54.4
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 7.7e-210 734.6 821 53.0
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 7.7e-210 734.6 754 56.5
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.2e-209 733.0 788 53.3
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 9.4e-208 727.6 752 56.1
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.6e-207 726.9 780 54.5
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 3.6e-207 725.7 787 53.5
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 8.0e-207 724.5 851 50.9
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.4e-206 723.8 799 53.2
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.3e-206 723.0 778 53.0
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 6.7e-206 721.5 754 56.4
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.4e-205 718.8 759 54.8
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 5.7e-205 718.4 825 51.3
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.2e-204 716.5 777 53.0
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 8.5e-201 704.5 780 52.4
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.9e-200 703.4 775 52.4
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 2.5e-200 703.0 768 52.3
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 5.5e-200 701.8 770 53.8
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 7.2e-200 701.4 775 54.3
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 1.6e-199 700.3 768 53.5
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.1e-199 699.9 789 53.4
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.1e-199 699.9 798 52.6
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 3.3e-197 692.6 772 51.7
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 9.7e-197 691.0 776 51.8
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 2.4e-195 686.4 785 51.6
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.2e-194 684.1 798 52.3
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.7e-194 682.9 758 51.5
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 7.7e-194 681.4 759 52.6
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 3.2e-192 676.0 780 53.5
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 4.2e-192 675.6 772 51.9
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 7.2e-192 674.9 763 52.7
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 7.2e-192 674.9 776 52.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.2e-191 674.1 600 59.2
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.7e-191 672.9 769 51.5
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.7e-191 672.2 781 51.5
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 6.1e-191 671.8 774 52.1
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.8e-190 670.2 746 53.6
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.8e-190 670.2 808 50.5
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 6.8e-190 668.3 752 52.5
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 8.8e-190 667.9 812 49.6
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 5.7e-189 665.2 731 52.5
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 5.7e-189 665.2 637 57.9
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 7.5e-189 664.8 752 52.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 9.8e-189 664.5 776 52.3
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.3e-188 664.1 745 51.9
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.7e-188 663.7 771 50.8
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 3.7e-188 662.5 760 51.1
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 4.8e-188 662.1 756 50.8
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 7.0e-187 658.3 752 51.9
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 9.1e-187 657.9 745 52.8
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.2e-186 657.5 795 49.4
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.6e-186 657.1 752 51.9
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 4.2e-184 649.0 752 51.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 7.2e-184 648.3 632 57.4
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 2.8e-183 646.4 765 50.7
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.0e-183 644.8 858 48.3
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-182 644.0 751 51.8
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 8.9e-182 641.3 759 50.2
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-181 640.6 752 51.5
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 6.3e-180 635.2 759 49.9
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 5.4e-179 632.1 770 49.4
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.3e-177 626.7 752 50.1
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 4.3e-176 622.5 747 50.2
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.5e-173 614.0 617 55.6
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 3.4e-173 612.8 705 51.6
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 4.1e-171 605.9 738 48.8
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.0e-170 603.6 433 70.4
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 8.6e-169 598.2 742 49.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.5e-168 596.7 762 48.6
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 7.5e-165 585.1 613 52.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 2.4e-163 580.1 709 50.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.9e-160 570.5 881 42.7
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.4e-157 559.3 604 55.1
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.4e-155 554.3 850 40.6
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 3.9e-153 546.2 827 42.2
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.9e-152 543.9 742 46.6
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 8.9e-150 535.0 764 44.4
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.9e-144 517.3 766 43.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.2e-141 508.1 760 41.8
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.3e-135 488.0 509 53.8
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.5e-128 463.8 514 51.2
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.8e-118 431.0 684 40.9
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.8e-103 380.6 562 43.6
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.8e-92 343.6 712 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 7.2e-91 339.3 480 41.9
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.3e-87 328.6 488 41.8
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-87 327.4 533 40.7
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.4e-86 324.3 493 41.4
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.0e-85 321.2 308 56.8
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.7e-82 310.8 484 39.5
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.7e-82 310.8 484 39.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.3e-81 307.8 440 40.9
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.0e-76 290.0 603 34.5
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 5.5e-75 286.6 451 40.8
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-73 282.0 468 38.9
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.8e-73 281.6 532 42.3
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.3e-60 238.0 384 43.5
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 7.5e-56 223.0 639 35.1
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.7e-55 221.9 196 53.6
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.3e-44 185.7 200 55.5
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.5e-37 161.0 410 37.6
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 6.0e-29 133.7 407 31.9
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.9e-27 128.6 92 59.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 3.1e-17 94.7 71 67.6
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 4.0e-17 94.4 81 55.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.4e-14 84.0 54 64.8
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.4e-09 69.3 53 58.5
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 2.4e-09 68.6 53 54.7
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 6.9e-09 67.0 74 47.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.9e-09 67.0 74 47.3
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 2.9e-07 61.6 114 33.3
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 8.4e-07 60.1 75 46.7
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-06 59.7 53 49.1


User provided reference genes

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