Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 8.9e-53 209.9 100 100.0
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 8.6e-40 166.8 97 83.5
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.3e-39 164.5 91 85.7
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.2e-38 162.9 98 80.6
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.2e-38 162.9 97 77.3
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 6.2e-38 160.6 97 81.4
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.4e-37 159.5 98 78.6
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.4e-37 159.5 98 76.5
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.4e-37 159.5 88 84.1
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 2.4e-37 158.7 91 81.3
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 2.4e-37 158.7 99 77.8
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 3.1e-37 158.3 91 81.3
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 4.0e-37 157.9 97 79.4
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 5.2e-37 157.5 99 75.8
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 5.2e-37 157.5 91 81.3
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 6.8e-37 157.1 91 81.3
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.2e-36 156.4 97 77.3
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 1.2e-36 156.4 91 80.2
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.2e-36 156.4 98 73.5
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.5e-36 156.0 91 81.3
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 2.0e-36 155.6 98 75.5
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 2.6e-36 155.2 94 78.7
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 3.4e-36 154.8 98 75.5
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 3.4e-36 154.8 97 74.2
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.4e-36 154.8 88 80.7
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 3.4e-36 154.8 92 77.2
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.4e-36 154.8 96 78.1
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 4.4e-36 154.5 97 77.3
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 4.4e-36 154.5 92 78.3
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.8e-36 154.1 91 79.1
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 5.8e-36 154.1 91 79.1
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.8e-36 154.1 91 79.1
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 5.8e-36 154.1 86 81.4
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 7.6e-36 153.7 86 82.6
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 7.6e-36 153.7 86 82.6
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 7.6e-36 153.7 86 82.6
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.6e-36 153.7 99 74.7
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.3e-35 152.9 88 79.5
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.3e-35 152.9 88 79.5
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.3e-35 152.9 98 72.4
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.2e-35 152.1 91 78.0
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.2e-35 152.1 91 78.0
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 2.2e-35 152.1 86 81.4
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.9e-35 151.8 86 80.2
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 2.9e-35 151.8 86 81.4
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.8e-35 151.4 94 74.5
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.8e-35 151.4 92 75.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 3.8e-35 151.4 99 73.7
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 3.8e-35 151.4 90 77.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 3.8e-35 151.4 97 72.2
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.8e-35 151.4 91 76.9
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.8e-35 151.4 91 76.9
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 4.9e-35 151.0 110 68.2
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 6.4e-35 150.6 88 79.5
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 6.4e-35 150.6 92 77.2
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 6.4e-35 150.6 92 77.2
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.4e-34 149.4 91 75.8
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.9e-34 149.1 95 72.6
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.9e-34 149.1 91 75.8
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 3.2e-34 148.3 92 75.0
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 4.2e-34 147.9 86 79.1
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 4.2e-34 147.9 92 73.9
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 5.4e-34 147.5 91 74.7
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.1e-34 147.1 86 76.7
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 7.1e-34 147.1 86 80.2
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 7.1e-34 147.1 94 74.5
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 9.2e-34 146.7 90 75.6
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.2e-33 146.4 79 82.3
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.2e-33 146.4 91 75.8
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.6e-33 146.0 92 73.9
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 2.7e-33 145.2 97 71.1
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.5e-33 144.8 92 72.8
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 4.6e-33 144.4 92 71.7
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.6e-33 144.4 92 71.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.6e-33 144.4 92 71.7
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 4.6e-33 144.4 85 78.8
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 4.6e-33 144.4 85 77.6
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.0e-32 143.3 79 81.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.0e-32 143.3 87 75.9
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.0e-32 143.3 85 77.6
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.3e-32 142.1 79 81.0
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 2.3e-32 142.1 92 70.7
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.3e-32 142.1 85 77.6
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.3e-32 142.1 78 79.5
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.3e-32 142.1 78 79.5
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 3.0e-32 141.7 76 82.9
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.0e-32 141.7 89 75.3
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.9e-32 141.4 94 71.3
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 3.9e-32 141.4 96 69.8
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 5.1e-32 141.0 91 76.9
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 6.6e-32 140.6 77 81.8
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 6.6e-32 140.6 77 81.8
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 6.6e-32 140.6 77 81.8
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 6.6e-32 140.6 77 81.8
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 8.7e-32 140.2 89 74.2
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.1e-31 139.8 89 71.9
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.9e-31 139.0 77 80.5
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.9e-31 139.0 77 80.5
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 9.6e-31 136.7 92 70.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.1e-29 133.3 77 77.9
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.4e-29 132.9 76 77.6
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.8e-29 132.5 75 78.7
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 2.6e-28 128.6 117 57.3
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 5.8e-28 127.5 84 70.2
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 5.8e-28 127.5 66 84.8
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 9.9e-28 126.7 66 81.8
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.3e-27 126.3 66 81.8
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.9e-26 122.5 68 79.4
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 9.3e-26 120.2 89 64.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 6.0e-25 117.5 65 78.5
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.3e-24 116.3 72 75.0
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 3.0e-24 115.2 74 75.7
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 5.1e-24 114.4 83 61.4
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 3.3e-23 111.7 66 74.2
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.3e-23 111.3 85 62.4
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 2.8e-22 108.6 91 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 4.8e-22 107.8 88 54.5
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 8.1e-22 107.1 86 60.5
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 8.1e-22 107.1 63 73.0
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 5.3e-21 104.4 63 71.4
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.5e-20 102.8 64 70.3
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 2.0e-20 102.4 96 52.1
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 2.0e-20 102.4 63 71.4
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.6e-20 102.1 51 84.3
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.5e-20 101.3 62 72.6
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 6.4e-19 97.4 64 70.3
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.0e-16 88.6 59 71.2
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 7.4e-15 84.0 59 64.4
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 9.6e-15 83.6 46 82.6
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.1e-13 80.1 73 50.7
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 1.1e-13 80.1 85 44.7
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.4e-13 79.7 74 50.0
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 6.9e-13 77.4 49 71.4
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 3.8e-11 71.6 80 48.8
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 4.9e-11 71.2 33 87.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 2.1e-06 55.8 61 45.9


User provided reference genes

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