Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.4e-159 566.2 285 100.0
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 3.3e-108 395.6 305 71.5
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.7e-94 349.4 308 64.3
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 2.1e-83 313.2 308 57.1
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.6e-78 297.0 308 52.9
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 2.1e-78 296.6 321 52.3
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 2.7e-78 296.2 327 53.5
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 1.0e-77 294.3 314 52.9
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 3.0e-77 292.7 308 53.2
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.5e-76 290.4 307 53.7
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 1.5e-76 290.4 306 52.9
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 1.9e-76 290.0 326 52.8
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.5e-76 289.7 310 53.9
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 2.1e-75 286.6 307 51.8
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 3.6e-75 285.8 314 53.5
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 4.7e-75 285.4 308 51.6
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 8.1e-75 284.6 327 50.5
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 8.1e-75 284.6 295 54.2
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 1.1e-74 284.3 322 50.3
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.8e-74 283.5 305 52.5
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 2.4e-74 283.1 304 53.6
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 3.1e-74 282.7 310 52.9
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 9.0e-74 281.2 295 52.9
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.5e-73 280.4 295 53.6
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 2.0e-73 280.0 303 52.1
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 2.0e-73 280.0 303 52.5
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 3.4e-73 279.3 308 51.3
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 3.4e-73 279.3 308 51.6
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 4.4e-73 278.9 309 52.4
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 9.9e-73 277.7 311 51.1
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 9.9e-73 277.7 302 52.3
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.3e-72 277.3 311 53.1
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.7e-72 276.9 287 52.6
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.2e-72 276.6 305 52.1
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 2.9e-72 276.2 308 50.6
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 3.8e-72 275.8 312 50.3
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 6.4e-72 275.0 311 52.1
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 8.4e-72 274.6 308 52.6
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.1e-71 274.2 308 51.9
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.1e-71 274.2 307 50.8
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 1.1e-71 274.2 309 52.4
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.4e-71 273.9 309 52.4
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.4e-71 273.1 309 50.8
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 7.1e-71 271.6 303 50.5
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.6e-70 270.4 313 49.5
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 3.5e-70 269.2 307 50.5
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 6.0e-70 268.5 303 49.2
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.9e-68 263.5 316 47.5
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 2.5e-68 263.1 351 45.3
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 4.3e-68 262.3 308 50.3
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.6e-67 260.4 307 52.1
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 2.8e-67 259.6 309 49.5
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.8e-67 259.6 308 49.0
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 8.1e-67 258.1 299 49.5
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.1e-66 257.7 305 47.9
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 1.1e-66 257.7 261 56.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.4e-66 256.5 305 47.2
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.2e-65 254.2 310 49.0
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 5.8e-65 251.9 292 50.0
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 5.8e-65 251.9 307 50.5
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 9.9e-65 251.1 313 46.0
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 9.9e-65 251.1 273 52.0
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.3e-64 250.8 306 47.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.7e-64 250.4 308 46.8
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 2.2e-64 250.0 310 46.1
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 6.4e-64 248.4 274 51.8
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 8.4e-64 248.1 300 50.0
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 1.4e-63 247.3 294 50.3
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 7.1e-63 245.0 316 46.5
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.9e-61 239.2 322 46.3
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.5e-60 237.3 313 47.3
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 9.0e-58 228.0 307 44.0
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 4.5e-57 225.7 171 71.3
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 5.8e-57 225.3 291 46.7
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 4.9e-56 222.2 321 44.2
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 2.1e-54 216.9 286 45.5
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 2.7e-54 216.5 296 45.9
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 2.7e-54 216.5 302 43.7
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 4.6e-54 215.7 201 58.2
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 5.1e-53 212.2 206 57.3
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 8.7e-53 211.5 285 45.3
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.5e-52 210.7 295 44.4
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 2.8e-51 206.5 428 34.6
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 2.8e-51 206.5 280 46.1
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 3.7e-51 206.1 185 59.5
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 5.3e-50 202.2 326 42.0
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 6.9e-50 201.8 199 53.3
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 2.0e-49 200.3 270 45.9
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.6e-49 199.9 185 56.8
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 2.6e-49 199.9 343 40.8
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.5e-49 199.1 186 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.8e-45 187.2 297 41.1
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.6e-43 180.6 250 42.4
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.2e-43 180.3 323 37.8
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.7e-43 179.5 170 57.6
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.4e-41 172.9 337 35.3
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 5.5e-39 165.6 365 34.2
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.4e-39 164.9 194 50.5
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.7e-38 163.3 177 50.3
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 3.3e-36 156.4 291 39.5
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.0e-32 144.8 152 53.3
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.9e-32 143.3 312 35.9
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 1.1e-31 141.4 233 39.1
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 5.1e-29 132.5 449 27.6
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.5e-25 119.4 301 33.2
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 8.5e-24 115.2 157 36.9
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 6.7e-21 105.5 95 61.1
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 1.1e-18 98.2 184 34.2
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.0e-18 95.5 116 49.1
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 9.1e-18 95.1 85 60.0
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.5e-12 77.8 198 31.3
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 2.0e-12 77.4 115 36.5
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.4e-10 71.2 51 62.7
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 7.0e-10 68.9 44 70.5
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.2e-09 68.2 74 47.3
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-07 61.6 67 43.3
SEGI_16292 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.2e-07 60.1 80 41.2
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.4e-07 58.5 91 41.8


User provided reference genes

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