Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0031811 Helianthus annuus HOM05D000054 ORTHO05D010247 1.9e-78 296.2 197 100.0
HanXRQChr15g0463151 Helianthus annuus HOM05D000054 ORTHO05D000171 1.0e-12 77.8 90 51.1
VMungo1127G1828 Vigna mungo HOM05D000054 ORTHO05D000171 1.5e-11 73.9 84 45.2
Psat5g234240 Pisum sativum HOM05D000054 ORTHO05D000171 3.3e-11 72.8 94 38.3
HanXRQChr04g0123581 Helianthus annuus HOM05D000054 ORTHO05D010247 4.4e-11 72.4 96 45.8
Actinidia00876 Actinidia chinensis HOM05D000054 ORTHO05D000171 7.4e-11 71.6 91 42.9
arahy.Tifrunner.gnm1.ann1.DTC7Y5 Arachis hypogaea HOM05D000054 ORTHO05D002584 7.4e-11 71.6 87 46.0
arahy.Tifrunner.gnm1.ann1.EVYE6S Arachis hypogaea HOM05D000054 ORTHO05D000171 9.7e-11 71.2 107 43.0
arahy.Tifrunner.gnm1.ann1.ZK641K Arachis hypogaea HOM05D000054 ORTHO05D000171 2.2e-10 70.1 102 42.2
Lsat_1_v5_gn_7_102060 Lactuca sativa HOM05D000054 ORTHO05D000171 2.2e-10 70.1 94 38.3
VMungo1080G1380 Vigna mungo HOM05D000054 ORTHO05D000171 2.2e-10 70.1 105 41.0
Rhsim04G0036300 Rhododendron simsii HOM05D000054 ORTHO05D000171 3.7e-10 69.3 171 41.5
BcaB04g20959 Brassica carinata HOM05D000054 ORTHO05D000171 6.3e-10 68.6 91 39.6
AL1G61930 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 8.2e-10 68.2 95 38.9
ECA248G0995 Erigeron canadensis HOM05D000054 ORTHO05D000171 1.1e-09 67.8 157 39.5
RhsimUnG0207000 Rhododendron simsii HOM05D000054 ORTHO05D002584 1.1e-09 67.8 98 43.9
ClCG07G010050 Citrullus lanatus HOM05D000054 ORTHO05D000171 1.4e-09 67.4 86 45.3
Haze_09292 Corylus avellana HOM05D000054 ORTHO05D000171 1.4e-09 67.4 91 40.7
HanXRQChr13g0412151 Helianthus annuus HOM05D000054 ORTHO05D002584 1.4e-09 67.4 95 38.9
PGR083G0101 Punica granatum HOM05D000054 ORTHO05D000171 1.8e-09 67.0 92 43.5
CsaV3_4G008280 Cucumis sativus L. HOM05D000054 ORTHO05D000171 2.4e-09 66.6 86 44.2
Phvul.005G079733 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 2.4e-09 66.6 88 42.0
QL08p025818 Quercus lobata HOM05D000054 ORTHO05D000171 2.4e-09 66.6 94 42.6
QL10p027704 Quercus lobata HOM05D000054 ORTHO05D000171 2.4e-09 66.6 92 42.4
vmacro11964 Vaccinium macrocarpon HOM05D000054 ORTHO05D002584 2.4e-09 66.6 90 42.2
Lj1C1177G18 Lonicera japonica HOM05D000054 ORTHO05D000171 3.1e-09 66.2 98 40.8
CSS0019456 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 4.1e-09 65.9 89 42.7
TAR624G0629 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.1e-09 65.9 94 41.5
PGR083G0379 Punica granatum HOM05D000054 ORTHO05D000171 7.0e-09 65.1 91 45.1
Ciclev10018908m.g Citrus clementina HOM05D000054 ORTHO05D000171 9.1e-09 64.7 91 41.8
CSS0037123 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.2e-08 64.3 88 43.2
Manes.15G108900 Manihot esculenta HOM05D000054 ORTHO05D000171 1.2e-08 64.3 94 40.4
Atru.chr1.2394 Acer truncatum HOM05D000054 ORTHO05D000171 1.6e-08 63.9 90 38.9
Ciclev10024314m.g Citrus clementina HOM05D000054 ORTHO05D000171 1.6e-08 63.9 94 40.4
HanXRQChr04g0116211 Helianthus annuus HOM05D000054 ORTHO05D000171 1.6e-08 63.9 122 33.6
TAR626G1348 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.6e-08 63.9 94 42.6
TWI39G1181 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 2.0e-08 63.5 87 40.2
HanXRQChr09g0258651 Helianthus annuus HOM05D000054 ORTHO05D000171 2.6e-08 63.2 88 39.8
HanXRQChr14g0439921 Helianthus annuus HOM05D000054 ORTHO05D000171 3.5e-08 62.8 94 37.2
Potri.010G155150 Populus trichocarpa HOM05D000054 ORTHO05D000171 3.5e-08 62.8 93 37.6
Sabra16G0254000 Salix brachista HOM05D000054 ORTHO05D002584 4.5e-08 62.4 117 40.2
Solyc02g071870.4 Solanum lycopersicum HOM05D000054 ORTHO05D000171 4.5e-08 62.4 89 40.4
TAR627G0608 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.5e-08 62.4 104 39.4
Potri.001G386300 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.9e-08 62.0 94 43.6
QL10p027809 Quercus lobata HOM05D000054 ORTHO05D000171 5.9e-08 62.0 94 40.4
Potri.016G011200 Populus trichocarpa HOM05D000054 ORTHO05D000171 7.7e-08 61.6 93 37.6
Sed0015607 Sechium edule HOM05D000054 ORTHO05D000171 7.7e-08 61.6 94 38.3
BraA05t20720Z Brassica rapa HOM05D000054 ORTHO05D000171 1.0e-07 61.2 81 42.0
DCAR_021034 Daucus carota HOM05D000054 ORTHO05D002584 1.0e-07 61.2 100 42.0
HanXRQChr15g0495101 Helianthus annuus HOM05D000054 ORTHO05D002584 1.0e-07 61.2 95 32.6
TAR624G0357 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.0e-07 61.2 86 39.5
MELO3C032471.2 Cucumis melo HOM05D000054 ORTHO05D000171 1.3e-07 60.8 96 38.5
ECA236G2881 Erigeron canadensis HOM05D000054 ORTHO05D000171 1.3e-07 60.8 88 38.6
Eucgr.B00972 Eucalyptus grandis HOM05D000054 ORTHO05D000171 1.3e-07 60.8 89 41.6
Medtr8g087740 Medicago truncatula HOM05D000054 ORTHO05D000171 1.3e-07 60.8 112 34.8
Nn3g21042 Nelumbo nucifera HOM05D000054 ORTHO05D000171 1.3e-07 60.8 89 41.6
PSO528G0130 Papaver somniferum HOM05D000054 ORTHO05D000171 1.3e-07 60.8 88 43.2
TAR376G0907 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.3e-07 60.8 93 40.9
Ca_03935_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000171 1.7e-07 60.5 57 47.4
Ca_03937_v3 Cicer arietinum L. HOM05D000054 ORTHO05D002584 1.7e-07 60.5 51 51.0
Medtr2g074830 Medicago truncatula HOM05D000054 ORTHO05D002584 1.7e-07 60.5 83 38.6
Potri.010G155600 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.7e-07 60.5 93 37.6
A05p18250 Brassica napus HOM05D000054 ORTHO05D000171 2.2e-07 60.1 83 41.0
AUR62039501 Chenopodium quinoa HOM05D000054 ORTHO05D000171 2.2e-07 60.1 103 36.9
Cc02_g15990 Coffea canephora HOM05D000054 ORTHO05D010247 2.2e-07 60.1 100 36.0
Potri.003G026325 Populus trichocarpa HOM05D000054 ORTHO05D000171 2.2e-07 60.1 86 39.5
Sed0011099 Sechium edule HOM05D000054 ORTHO05D000171 2.2e-07 60.1 84 42.9
GSVIVG01014150001 Vitis vinifera HOM05D000054 ORTHO05D000171 2.2e-07 60.1 89 38.2
Actinidia16764 Actinidia chinensis HOM05D000054 ORTHO05D000171 2.9e-07 59.7 85 37.6
CiPaw.11G157800 Carya illinoinensis HOM05D000054 ORTHO05D000171 2.9e-07 59.7 95 38.9
CiPaw.12G111500 Carya illinoinensis HOM05D000054 ORTHO05D000171 2.9e-07 59.7 93 39.8
DCAR_019607 Daucus carota HOM05D000054 ORTHO05D002584 2.9e-07 59.7 108 38.9
Nn3g21041 Nelumbo nucifera HOM05D000054 ORTHO05D000171 2.9e-07 59.7 89 41.6
Nn3g21046 Nelumbo nucifera HOM05D000054 ORTHO05D000171 2.9e-07 59.7 98 41.8
TPR.G12993 Trifolium pratense HOM05D000054 ORTHO05D008307 2.9e-07 59.7 55 49.1
Rhsim04G0034600 Rhododendron simsii HOM05D000054 ORTHO05D000171 3.8e-07 59.3 95 42.1
CSS0024277 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 5.0e-07 58.9 84 39.3
CSS0048529 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 5.0e-07 58.9 96 36.5
CARHR089780 Cardamine hirsuta HOM05D000054 ORTHO05D000171 5.0e-07 58.9 104 39.4
MELO3C025664.2 Cucumis melo HOM05D000054 ORTHO05D000171 5.0e-07 58.9 93 38.7
Medtr2g073600 Medicago truncatula HOM05D000054 ORTHO05D000171 5.0e-07 58.9 56 50.0
Nn6g34454 Nelumbo nucifera HOM05D000054 ORTHO05D000171 5.0e-07 58.9 88 39.8
PSO528G0158 Papaver somniferum HOM05D000054 ORTHO05D000171 5.0e-07 58.9 55 50.9
Psat2g027400 Pisum sativum HOM05D000054 ORTHO05D000171 5.0e-07 58.9 85 40.0
PGR083G2336 Punica granatum HOM05D000054 ORTHO05D000171 5.0e-07 58.9 100 38.0
Rhsim02G0089100 Rhododendron simsii HOM05D000054 ORTHO05D000171 5.0e-07 58.9 56 44.6
TPR.G13146 Trifolium pratense HOM05D000054 ORTHO05D002584 5.0e-07 58.9 50 54.0
CSS0032317 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D010247 6.5e-07 58.5 92 41.3
Thhalv10010902m.g Eutrema salsugineum HOM05D000054 ORTHO05D014621 6.5e-07 58.5 106 40.6
PSO013G0086 Papaver somniferum HOM05D000054 ORTHO05D000171 6.5e-07 58.5 81 39.5
AT1G53430 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 8.5e-07 58.2 56 46.4
CSS0034854 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 8.5e-07 58.2 86 39.5
CANSAT21G0852 Cannabis sativa HOM05D000054 ORTHO05D000171 8.5e-07 58.2 81 42.0
CiPaw.09G135900 Carya illinoinensis HOM05D000054 ORTHO05D000171 8.5e-07 58.2 88 38.6
COL.COLO4_22835 Corchorus olitorius HOM05D000054 ORTHO05D000171 8.5e-07 58.2 83 38.6
Dinv13369 Davidia involucrata HOM05D000054 ORTHO05D000171 8.5e-07 58.2 86 41.9
Duzib235G1038 Durio zibethinus HOM05D000054 ORTHO05D000171 8.5e-07 58.2 83 39.8
Manes.16G044300 Manihot esculenta HOM05D000054 ORTHO05D000171 8.5e-07 58.2 88 37.5
Medtr2g073520 Medicago truncatula HOM05D000054 ORTHO05D000171 8.5e-07 58.2 77 44.2
PSO170G1676 Papaver somniferum HOM05D000054 ORTHO05D000171 8.5e-07 58.2 86 40.7
Phvul.005G078100 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 8.5e-07 58.2 79 39.2
Potri.001G385600 Populus trichocarpa HOM05D000054 ORTHO05D000171 8.5e-07 58.2 86 39.5
Potri.003G025566 Populus trichocarpa HOM05D000054 ORTHO05D000171 8.5e-07 58.2 87 39.1
Potri.003G025800 Populus trichocarpa HOM05D000054 ORTHO05D000171 8.5e-07 58.2 86 39.5
Sed0010607 Sechium edule HOM05D000054 ORTHO05D000171 8.5e-07 58.2 79 40.5
Eucgr.F04178 Eucalyptus grandis HOM05D000054 ORTHO05D000171 1.1e-06 57.8 86 39.5
FvH4_3g00800 Fragaria vesca HOM05D000054 ORTHO05D000171 1.1e-06 57.8 85 42.4
Os02g0232500 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 1.1e-06 57.8 103 36.9
Sopen02g020860 Solanum pennellii HOM05D000054 ORTHO05D000171 1.1e-06 57.8 87 39.1
AL1G61940 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 1.5e-06 57.4 54 48.1
AT1G53440 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 1.5e-06 57.4 92 40.2
MSTRG.16180 Avicennia marina HOM05D000054 ORTHO05D000171 1.5e-06 57.4 85 43.5
Dinv12728 Davidia involucrata HOM05D000054 ORTHO05D000171 1.5e-06 57.4 85 38.8
Manes.03G092416 Manihot esculenta HOM05D000054 ORTHO05D000171 1.5e-06 57.4 77 42.9
TPR.G17438 Trifolium pratense HOM05D000054 ORTHO05D002584 1.5e-06 57.4 80 37.5
CSS0014394 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.9e-06 57.0 84 38.1
CSS0022270 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.9e-06 57.0 84 39.3
CiPaw.11G157900 Carya illinoinensis HOM05D000054 ORTHO05D000171 1.9e-06 57.0 92 39.1
Haze_09275 Corylus avellana HOM05D000054 ORTHO05D010247 1.9e-06 57.0 53 49.1
CsaV3_4G032900 Cucumis sativus L. HOM05D000054 ORTHO05D000171 1.9e-06 57.0 113 34.5
Medtr2g075060 Medicago truncatula HOM05D000054 ORTHO05D000171 1.9e-06 57.0 96 30.2
QL02p081039 Quercus lobata HOM05D000054 ORTHO05D000171 1.9e-06 57.0 84 41.7
Aa31LG10G1750 Aethionema arabicum HOM05D000054 ORTHO05D000171 2.5e-06 56.6 90 42.2
CDE04G2853 Ceratophyllum demersum HOM05D000054 ORTHO05D000171 2.5e-06 56.6 82 41.5
FAN11G2174 Fragaria x ananassa HOM05D000054 ORTHO05D000171 2.5e-06 56.6 99 36.4
Lj3g0027719 Lotus japonicus HOM05D000054 ORTHO05D000171 2.5e-06 56.6 96 34.4
Nn6g34455 Nelumbo nucifera HOM05D000054 ORTHO05D000171 2.5e-06 56.6 87 40.2
TPR.G13071 Trifolium pratense HOM05D000054 ORTHO05D002584 2.5e-06 56.6 50 52.0
TWI09G1120 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 2.5e-06 56.6 103 36.9
vmacro09411 Vaccinium macrocarpon HOM05D000054 ORTHO05D000171 2.5e-06 56.6 104 39.4
VMungo1080G0576 Vigna mungo HOM05D000054 ORTHO05D000171 2.5e-06 56.6 87 36.8
CiPaw.09G135800 Carya illinoinensis HOM05D000054 ORTHO05D010247 3.2e-06 56.2 86 37.2
Psat0s1728g0080 Pisum sativum HOM05D000054 ORTHO05D000171 3.2e-06 56.2 56 46.4
Potri.001G385300 Populus trichocarpa HOM05D000054 ORTHO05D000171 3.2e-06 56.2 94 39.4
Zm00001eb239210 Zea mays HOM05D000054 ORTHO05D000171 3.2e-06 56.2 87 34.5
Aqoxy1G03781 Aquilegia oxysepala HOM05D000054 ORTHO05D000171 4.2e-06 55.8 88 37.5
DCAR_021032 Daucus carota HOM05D000054 ORTHO05D002584 4.2e-06 55.8 96 38.5
LjContig00310g0009593 Lotus japonicus HOM05D000054 ORTHO05D000171 4.2e-06 55.8 92 35.9
Phvul.008G264400 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 4.2e-06 55.8 55 49.1
Potri.001G385400 Populus trichocarpa HOM05D000054 ORTHO05D000171 4.2e-06 55.8 86 38.4
ECA248G2116 Erigeron canadensis HOM05D000054 ORTHO05D000171 5.5e-06 55.5 81 39.5
Migut.M00993 Erythranthe guttata HOM05D000054 ORTHO05D000171 5.5e-06 55.5 82 41.5
Lsat_1_v5_gn_7_26820 Lactuca sativa HOM05D000054 ORTHO05D000171 5.5e-06 55.5 122 30.3
Lj2C315T5 Lonicera japonica HOM05D000054 ORTHO05D000171 5.5e-06 55.5 87 39.1
Medtr2g075140 Medicago truncatula HOM05D000054 ORTHO05D000171 5.5e-06 55.5 51 49.0
Nitab4.5_0013354g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000171 5.5e-06 55.5 81 42.0
Rhsim02G0089500 Rhododendron simsii HOM05D000054 ORTHO05D000171 5.5e-06 55.5 97 33.0
Sabra11G0060200 Salix brachista HOM05D000054 ORTHO05D000171 5.5e-06 55.5 86 38.4
Sabra16G0005200 Salix brachista HOM05D000054 ORTHO05D019355 5.5e-06 55.5 85 41.2
FAN21G4054 Fragaria x ananassa HOM05D000054 ORTHO05D000171 7.2e-06 55.1 85 37.6
Glyma.14G026300 Glycine max HOM05D000054 ORTHO05D000171 7.2e-06 55.1 56 48.2
Lj8C446G5 Lonicera japonica HOM05D000054 ORTHO05D014621 7.2e-06 55.1 106 36.8
Ca_03934_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000171 9.4e-06 54.7 43 58.1
ClCG11G017240 Citrullus lanatus HOM05D000054 ORTHO05D000171 9.4e-06 54.7 54 40.7
CsaV3_4G032890 Cucumis sativus L. HOM05D000054 ORTHO05D000171 9.4e-06 54.7 91 36.3
Eucgr.B00894 Eucalyptus grandis HOM05D000054 ORTHO05D000171 9.4e-06 54.7 94 38.3
FvH4_3g17840 Fragaria vesca HOM05D000054 ORTHO05D000171 9.4e-06 54.7 84 39.3
HanXRQChr01g0006411 Helianthus annuus HOM05D000054 ORTHO05D000171 9.4e-06 54.7 88 37.5
Lsat_1_v5_gn_7_102080 Lactuca sativa HOM05D000054 ORTHO05D000171 9.4e-06 54.7 94 36.2
Peaxi162Scf00112g01915 Petunia axillaris HOM05D000054 ORTHO05D010247 9.4e-06 54.7 88 37.5
Sc03g0010660 Simmondsia chinensis HOM05D000054 ORTHO05D010247 9.4e-06 54.7 152 52.0
TPR.G13086 Trifolium pratense HOM05D000054 ORTHO05D000171 9.4e-06 54.7 43 58.1
TWI73G0799 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 9.4e-06 54.7 86 37.2


User provided reference genes

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