Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 0.0e+00 1868.6 947 100.0
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 0.0e+00 1218.8 953 67.6
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 3.0e-299 1031.9 959 60.5
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 5.8e-295 1017.7 951 60.4
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.7e-233 813.5 1013 49.8
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.4e-200 703.4 1003 44.6
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.2e-196 691.0 1043 43.9
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 2.9e-193 679.9 996 44.8
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 6.4e-193 678.7 1016 44.6
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.7e-190 670.6 1021 44.6
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 3.0e-190 669.8 1009 44.2
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 5.1e-190 669.1 978 43.4
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 3.3e-189 666.4 978 43.3
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 5.2e-187 659.1 992 44.0
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 2.0e-186 657.1 1021 43.8
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.8e-185 652.9 994 44.0
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.2e-183 647.9 893 47.4
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 3.5e-183 646.4 1024 43.2
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 1.1e-181 641.3 1000 42.7
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.6e-180 637.5 985 42.6
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 3.6e-180 636.3 988 42.3
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 1.2e-178 631.3 1006 41.8
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 3.8e-177 626.3 1016 43.1
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 1.1e-176 624.8 1023 42.1
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 6.7e-174 615.5 981 42.1
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.1e-173 614.8 985 42.5
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 5.6e-173 612.5 1018 41.8
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 7.4e-173 612.1 992 41.5
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 7.4e-173 612.1 1021 42.8
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 2.6e-170 603.6 1017 43.0
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 4.9e-169 599.4 1011 42.3
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 2.3e-166 590.5 1023 42.1
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.1e-165 588.2 1017 41.0
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.5e-165 587.8 1008 41.2
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.9e-161 572.8 1025 41.4
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 7.1e-160 568.9 1029 40.9
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 2.7e-159 567.0 1025 41.2
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 1.0e-158 565.1 1003 40.1
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 5.1e-158 562.8 1019 40.3
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.5e-157 560.5 1011 41.2
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.4e-157 558.9 1008 39.8
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 3.7e-156 556.6 1076 39.3
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.1e-155 553.5 1007 40.0
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.9e-155 552.4 1010 39.8
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 9.0e-155 552.0 996 39.5
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 2.9e-153 547.0 1001 40.3
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 5.5e-152 542.7 1022 40.0
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.4e-152 542.0 1002 39.8
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 1.4e-150 538.1 944 39.4
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 4.8e-148 529.6 1000 37.7
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 1.1e-147 528.5 1023 38.0
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 4.1e-147 526.6 1002 39.9
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 4.5e-146 523.1 982 38.2
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 2.7e-143 513.8 1026 37.5
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 1.0e-142 511.9 1008 38.4
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 3.9e-142 510.0 1014 38.4
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 6.7e-142 509.2 1019 38.0
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 8.8e-142 508.8 887 38.9
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.6e-141 507.3 994 37.3
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.7e-140 504.6 992 38.9
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.2e-138 498.4 1057 37.1
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 3.5e-138 496.9 1059 37.0
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.7e-138 495.7 896 38.4
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 3.8e-137 493.4 991 37.0
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 4.2e-136 490.0 784 42.1
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.1e-135 487.6 969 38.6
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 4.7e-135 486.5 1003 37.8
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.0e-134 485.3 1024 37.6
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.1e-133 481.9 994 37.7
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.4e-131 474.9 789 39.3
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 3.1e-131 473.8 1011 35.5
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 5.3e-131 473.0 1001 36.6
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 9.1e-131 472.2 1007 37.3
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 1.6e-130 471.5 1006 35.8
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 6.5e-129 466.1 1012 37.1
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 7.2e-128 462.6 1002 36.1
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 7.2e-128 462.6 1028 34.5
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 2.7e-127 460.7 994 34.8
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 6.1e-127 459.5 994 35.2
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 6.1e-127 459.5 825 39.5
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 2.6e-125 454.1 878 38.4
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 2.8e-124 450.7 1021 35.3
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 6.3e-124 449.5 1006 35.0
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 6.3e-124 449.5 1006 35.0
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 4.1e-123 446.8 1018 35.9
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 5.3e-123 446.4 1013 35.6
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 8.0e-119 432.6 996 36.6
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.0e-118 432.2 1004 34.6
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 1.4e-118 431.8 996 34.3
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 8.8e-118 429.1 994 34.6
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 4.4e-117 426.8 1003 34.7
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 5.7e-117 426.4 1005 34.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 1.2e-114 418.7 994 34.1
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 2.4e-107 394.4 592 43.9
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 9.2e-107 392.5 871 35.4
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.8e-103 380.9 473 49.3
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 3.4e-101 374.0 586 42.2
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 3.5e-98 364.0 1001 33.9
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.2e-95 355.5 995 31.5
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 4.7e-95 353.6 457 48.1
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.0e-93 348.2 963 33.1
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.5e-90 337.4 889 33.1
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 7.5e-85 319.7 863 31.6
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 6.4e-84 316.6 662 37.3
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.9e-80 305.1 464 44.4
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 1.9e-72 278.5 327 51.4
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.3e-71 275.8 373 45.6
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 3.1e-70 271.2 1019 27.4
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 2.1e-63 248.4 596 30.9
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 7.6e-61 240.0 1081 25.7
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 8.4e-60 236.5 246 56.1
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 8.7e-57 226.5 463 38.2
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 4.8e-55 220.7 943 27.3
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.5e-53 215.7 354 41.8
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 2.9e-52 211.5 972 28.2
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.2e-50 206.1 298 45.6
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.1e-43 183.0 248 48.8
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 1.1e-40 172.9 305 38.7
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 1.8e-38 165.6 178 54.5
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 2.1e-34 152.1 411 35.0
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 2.7e-26 125.2 1001 21.9
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.6e-24 118.6 361 29.9
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 1.1e-16 93.2 88 64.8
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 4.1e-14 84.7 172 37.2
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 8.5e-12 77.0 92 63.0
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 3.2e-11 75.1 139 42.4
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 7.5e-08 63.9 279 28.7
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 4.8e-07 61.2 278 23.7
SMO367G0167 Selaginella moellendorffii HOM05D000641 ORTHO05D050849 1.1e-06 60.1 194 25.3
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 9.1e-06 57.0 203 27.1


User provided reference genes

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