Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0030081 Helianthus annuus HOM05D001040 ORTHO05D222814 4.6e-68 261.2 137 100.0
HanXRQChr10g0310391 Helianthus annuus HOM05D001040 ORTHO05D002795 2.9e-22 109.0 103 65.0
ECA234G2264 Erigeron canadensis HOM05D001040 ORTHO05D002795 2.5e-21 105.9 103 61.2
Haze_00969 Corylus avellana HOM05D001040 ORTHO05D002795 9.7e-18 94.0 104 55.8
Lj6C564G2 Lonicera japonica HOM05D001040 ORTHO05D002795 9.7e-18 94.0 103 54.4
Oeu029303.1 Olea europaea HOM05D001040 ORTHO05D002795 1.3e-17 93.6 103 54.4
CANSAT54G0833 Cannabis sativa HOM05D001040 ORTHO05D002795 2.2e-17 92.8 103 53.4
Cfa015577 Carpinus fangiana HOM05D001040 ORTHO05D002795 2.2e-17 92.8 104 54.8
FvH4_4g14410 Fragaria vesca HOM05D001040 ORTHO05D002795 2.2e-17 92.8 103 53.4
FAN12G3050 Fragaria x ananassa HOM05D001040 ORTHO05D002795 2.2e-17 92.8 103 53.4
FAN17G1017 Fragaria x ananassa HOM05D001040 ORTHO05D002795 2.2e-17 92.8 103 53.4
MSTRG.3987 Avicennia marina HOM05D001040 ORTHO05D002795 4.8e-17 91.7 103 52.4
Duzib084G0989 Durio zibethinus HOM05D001040 ORTHO05D002795 6.3e-17 91.3 103 50.5
Duzib151G1101 Durio zibethinus HOM05D001040 ORTHO05D002795 6.3e-17 91.3 103 50.5
FAN22G0917 Fragaria x ananassa HOM05D001040 ORTHO05D002795 8.3e-17 90.9 103 52.4
Rhsim02G0019600 Rhododendron simsii HOM05D001040 ORTHO05D002795 8.3e-17 90.9 107 53.3
vmacro15300 Vaccinium macrocarpon HOM05D001040 ORTHO05D002795 8.3e-17 90.9 107 52.3
DCAR_002418 Daucus carota HOM05D001040 ORTHO05D002795 1.1e-16 90.5 104 49.0
GSVIVG01017882001 Vitis vinifera HOM05D001040 ORTHO05D002795 1.1e-16 90.5 103 53.4
Lsat_1_v5_gn_5_76940 Lactuca sativa HOM05D001040 ORTHO05D002795 1.4e-16 90.1 103 55.3
RcHm_v2.0_Chr4g0418471 Rosa chinensis HOM05D001040 ORTHO05D002795 1.8e-16 89.7 84 60.7
Aqoxy2G03247 Aquilegia oxysepala HOM05D001040 ORTHO05D002795 3.1e-16 89.0 104 54.8
MD16G1183000 Malus domestica HOM05D001040 ORTHO05D002795 3.1e-16 89.0 103 49.5
SalBow2G2013 Salvia bowleyana HOM05D001040 ORTHO05D002795 3.1e-16 89.0 103 54.4
TAR636G2106 Trochodendron aralioides HOM05D001040 ORTHO05D002795 3.1e-16 89.0 104 51.9
Gohir.D02G036400 Gossypium hirsutum HOM05D001040 ORTHO05D002795 4.1e-16 88.6 103 50.5
Sed0021788 Sechium edule HOM05D001040 ORTHO05D002795 4.1e-16 88.6 104 53.8
CAN.G1247.3 Capsicum annuum HOM05D001040 ORTHO05D002795 9.1e-16 87.4 103 53.4
ClCG06G005770 Citrullus lanatus HOM05D001040 ORTHO05D002795 9.1e-16 87.4 104 52.9
Migut.G00260 Erythranthe guttata HOM05D001040 ORTHO05D002795 9.1e-16 87.4 104 51.0
Gohir.A02G028700 Gossypium hirsutum HOM05D001040 ORTHO05D002795 9.1e-16 87.4 103 49.5
Gorai.005G040500 Gossypium raimondii HOM05D001040 ORTHO05D002795 9.1e-16 87.4 103 49.5
MELO3C021398.2 Cucumis melo HOM05D001040 ORTHO05D002795 1.2e-15 87.0 104 52.9
CsaV3_6G018550 Cucumis sativus L. HOM05D001040 ORTHO05D002795 1.2e-15 87.0 104 52.9
Hma1.2p1_1037F.1_g250670 Hydrangea macrophylla HOM05D001040 ORTHO05D002795 1.2e-15 87.0 103 49.5
Hma1.2p1_1644F.1_g295330 Hydrangea macrophylla HOM05D001040 ORTHO05D002795 1.2e-15 87.0 103 49.5
Peaxi162Scf00769g00021 Petunia axillaris HOM05D001040 ORTHO05D002795 1.6e-15 86.7 103 53.4
Cc03_g03060 Coffea canephora HOM05D001040 ORTHO05D002795 2.7e-15 85.9 103 51.5
Dinv38386 Davidia involucrata HOM05D001040 ORTHO05D002795 2.7e-15 85.9 84 56.0
PGSC0003DMG400030792 Solanum tuberosum HOM05D001040 ORTHO05D002795 2.7e-15 85.9 103 52.4
SGA_v2.0_scaffold237G43837 Striga asiatica HOM05D001040 ORTHO05D002795 3.5e-15 85.5 104 53.8
Thecc.04G220900 Theobroma cacao HOM05D001040 ORTHO05D002795 5.9e-15 84.7 103 49.5
CiPaw.02G091500 Carya illinoinensis HOM05D001040 ORTHO05D002795 7.7e-15 84.3 104 51.0
Actinidia08517 Actinidia chinensis HOM05D001040 ORTHO05D002795 1.3e-14 83.6 106 49.1
MD13G1182500 Malus domestica HOM05D001040 ORTHO05D002795 1.3e-14 83.6 105 48.6
Actinidia00087 Actinidia chinensis HOM05D001040 ORTHO05D002795 1.7e-14 83.2 107 48.6
Ciclev10005070m.g Citrus clementina HOM05D001040 ORTHO05D002795 1.7e-14 83.2 104 48.1
TPR.G14184 Trifolium pratense HOM05D001040 ORTHO05D002795 2.9e-14 82.4 104 52.9
Nn1g02146 Nelumbo nucifera HOM05D001040 ORTHO05D002795 3.8e-14 82.0 107 49.5
QL06p005414 Quercus lobata HOM05D001040 ORTHO05D002795 6.5e-14 81.3 109 48.6
Sc13g0003910 Simmondsia chinensis HOM05D001040 ORTHO05D002795 8.5e-14 80.9 103 48.5
Solyc06g054420.3 Solanum lycopersicum HOM05D001040 ORTHO05D002795 8.5e-14 80.9 105 51.4
Sopen06g019500 Solanum pennellii HOM05D001040 ORTHO05D002795 8.5e-14 80.9 105 51.4
ATR0626G362 Amborella trichopoda HOM05D001040 ORTHO05D002795 1.5e-13 80.1 103 49.5
Medtr2g022060 Medicago truncatula HOM05D001040 ORTHO05D002795 1.9e-13 79.7 104 51.0
PGR004G2198 Punica granatum HOM05D001040 ORTHO05D002795 2.5e-13 79.3 106 46.2
Cpa.g.sc16.31 Carica papaya HOM05D001040 ORTHO05D002795 3.2e-13 79.0 103 45.6
MBI19_g03953_MAGBIO Magnolia biondii HOM05D001040 ORTHO05D002795 3.2e-13 79.0 105 47.6
CDE01G0412 Ceratophyllum demersum HOM05D001040 ORTHO05D002795 4.2e-13 78.6 104 48.1
Psat1g183760 Pisum sativum HOM05D001040 ORTHO05D002795 4.2e-13 78.6 104 50.0
Ca_00649_v3 Cicer arietinum L. HOM05D001040 ORTHO05D002795 5.5e-13 78.2 104 51.0
Lalb_Chr20g0118391 Lupinus albus HOM05D001040 ORTHO05D002795 5.5e-13 78.2 85 58.8
Manes.03G185300 Manihot esculenta HOM05D001040 ORTHO05D002795 5.5e-13 78.2 104 50.0
Phvul.006G154400 Phaseolus vulgaris HOM05D001040 ORTHO05D002795 5.5e-13 78.2 104 50.0
Potri.008G201900 Populus trichocarpa HOM05D001040 ORTHO05D002795 5.5e-13 78.2 105 49.5
Atru.chr4.2580 Acer truncatum HOM05D001040 ORTHO05D002795 9.4e-13 77.4 104 46.2
CSS0019599 Camellia sinensis var. sinensis HOM05D001040 ORTHO05D002795 1.2e-12 77.0 106 45.3
Lj6g0014723 Lotus japonicus HOM05D001040 ORTHO05D002795 1.2e-12 77.0 104 52.9
Sabra08G0159500 Salix brachista HOM05D001040 ORTHO05D002795 1.2e-12 77.0 105 48.6
Manes.15G022300 Manihot esculenta HOM05D001040 ORTHO05D002795 2.1e-12 76.3 103 47.6
Os03g0454100 Oryza sativa ssp. japonica HOM05D001040 ORTHO05D002795 2.1e-12 76.3 105 45.7
EL10Ac3g06336 Beta vulgaris HOM05D001040 ORTHO05D002795 2.7e-12 75.9 103 45.6
CDE12G0798 Ceratophyllum demersum HOM05D001040 ORTHO05D002795 2.7e-12 75.9 104 46.2
Glyma.13G209400 Glycine max HOM05D001040 ORTHO05D002795 3.6e-12 75.5 104 50.0
unitig_26.g8941 Utricularia gibba HOM05D001040 ORTHO05D002795 6.1e-12 74.7 104 49.0
A05p41770 Brassica napus HOM05D001040 ORTHO05D002795 1.0e-11 73.9 103 47.6
BraA05t22896Z Brassica rapa HOM05D001040 ORTHO05D002795 1.0e-11 73.9 103 47.6
HanXRQChr07g0187141 Helianthus annuus HOM05D001040 ORTHO05D225788 1.4e-11 73.6 60 70.0
ATR0580G307 Amborella trichopoda HOM05D001040 ORTHO05D002795 1.8e-11 73.2 87 49.4
Sp3g05150 Schrenkiella parvula HOM05D001040 ORTHO05D002795 2.3e-11 72.8 103 47.6
VMungo0540G0700 Vigna mungo HOM05D001040 ORTHO05D002795 2.3e-11 72.8 105 46.7
Eucgr.H03603 Eucalyptus grandis HOM05D001040 ORTHO05D002795 3.0e-11 72.4 109 42.2
BcaC05g29799 Brassica carinata HOM05D001040 ORTHO05D002795 4.0e-11 72.0 103 46.6
C05p61010 Brassica napus HOM05D001040 ORTHO05D002795 4.0e-11 72.0 103 46.6
BolC5t34757H Brassica oleracea HOM05D001040 ORTHO05D002795 4.0e-11 72.0 103 46.6
AUR62030063 Chenopodium quinoa HOM05D001040 ORTHO05D002795 4.0e-11 72.0 103 45.6
SEGI_03059 Sequoiadendron giganteum HOM05D001040 ORTHO05D002795 4.0e-11 72.0 105 45.7
HPP92_000041 Vanilla planifolia HOM05D001040 ORTHO05D002795 4.0e-11 72.0 105 47.6
AUR62002648 Chenopodium quinoa HOM05D001040 ORTHO05D002795 5.2e-11 71.6 103 46.6
BcaC05g30045 Brassica carinata HOM05D001040 ORTHO05D002795 1.5e-10 70.1 103 47.6
Carub.0003s0561 Capsella rubella HOM05D001040 ORTHO05D002795 2.0e-10 69.7 103 46.6
THA.LOC104818789 Tarenaya hassleriana HOM05D001040 ORTHO05D002795 2.6e-10 69.3 103 44.7
PSO170G4161 Papaver somniferum HOM05D001040 ORTHO05D002795 4.4e-10 68.6 104 48.1
Hund12203 Selenicereus undatus HOM05D001040 ORTHO05D002795 4.4e-10 68.6 104 44.2
AL3G17030 Arabidopsis lyrata HOM05D001040 ORTHO05D002795 7.5e-10 67.8 103 44.7
AT3G06170 Arabidopsis thaliana HOM05D001040 ORTHO05D002795 7.5e-10 67.8 103 44.7
arahy.Tifrunner.gnm1.ann1.0W128L Arachis hypogaea HOM05D001040 ORTHO05D002795 1.3e-09 67.0 106 46.2
arahy.Tifrunner.gnm1.ann1.56NXYI Arachis hypogaea HOM05D001040 ORTHO05D002795 1.3e-09 67.0 106 46.2
PSO407G0079 Papaver somniferum HOM05D001040 ORTHO05D002795 1.3e-09 67.0 104 47.1
CARHR080690 Cardamine hirsuta HOM05D001040 ORTHO05D002795 2.2e-09 66.2 103 44.7
Aa31LG5G16680 Aethionema arabicum HOM05D001040 ORTHO05D002795 3.7e-09 65.5 103 45.6
Aqoxy7G02505 Aquilegia oxysepala HOM05D001040 ORTHO05D002795 6.3e-09 64.7 87 42.5
MBI14_g16431_MAGBIO Magnolia biondii HOM05D001040 ORTHO05D002795 8.3e-09 64.3 87 42.5
Sabra03G0136600 Salix brachista HOM05D001040 ORTHO05D002795 8.3e-09 64.3 87 44.8
SEGI_36941 Sequoiadendron giganteum HOM05D001040 ORTHO05D002795 1.1e-08 63.9 109 44.0
CDE02G3476 Ceratophyllum demersum HOM05D001040 ORTHO05D002795 7.0e-08 61.2 87 41.4
Thhalv10020853m.g Eutrema salsugineum HOM05D001040 ORTHO05D002795 7.0e-08 61.2 103 43.7
Haze_15239 Corylus avellana HOM05D001040 ORTHO05D002795 1.2e-07 60.5 87 44.8
GSVIVG01016078001 Vitis vinifera HOM05D001040 ORTHO05D002795 1.2e-07 60.5 87 44.8
CAN.G1008.15 Capsicum annuum HOM05D001040 ORTHO05D002795 1.6e-07 60.1 87 43.7
Dinv21439 Davidia involucrata HOM05D001040 ORTHO05D002795 1.6e-07 60.1 87 43.7
Solyc03g117770.3 Solanum lycopersicum HOM05D001040 ORTHO05D002795 1.6e-07 60.1 87 43.7
Lsat_1_v5_gn_1_30761 Lactuca sativa HOM05D001040 ORTHO05D002795 2.0e-07 59.7 87 43.7
Lj9A490T31 Lonicera japonica HOM05D001040 ORTHO05D002795 2.0e-07 59.7 87 41.4
Nitab4.5_0004194g0020 Nicotiana tabacum HOM05D001040 ORTHO05D002795 2.0e-07 59.7 87 43.7
Nitab4.5_0005437g0010 Nicotiana tabacum HOM05D001040 ORTHO05D002795 2.0e-07 59.7 87 43.7
Potri.001G038100 Populus trichocarpa HOM05D001040 ORTHO05D002795 2.0e-07 59.7 104 41.3
SalBow7G0298 Salvia bowleyana HOM05D001040 ORTHO05D002795 2.0e-07 59.7 109 37.6
SGA_v2.0_scaffold37G14650 Striga asiatica HOM05D001040 ORTHO05D002795 2.0e-07 59.7 104 39.4
Actinidia18267 Actinidia chinensis HOM05D001040 ORTHO05D002795 2.7e-07 59.3 87 42.5
MSTRG.22837 Avicennia marina HOM05D001040 ORTHO05D002795 2.7e-07 59.3 104 39.4
PGR102G0996 Punica granatum HOM05D001040 ORTHO05D002795 2.7e-07 59.3 87 42.5
PGSC0003DMG400014159 Solanum tuberosum HOM05D001040 ORTHO05D002795 2.7e-07 59.3 87 42.5
HPP92_027013 Vanilla planifolia HOM05D001040 ORTHO05D002795 2.7e-07 59.3 104 40.4
HPP92_027024 Vanilla planifolia HOM05D001040 ORTHO05D002795 2.7e-07 59.3 104 40.4
AUR62002670 Chenopodium quinoa HOM05D001040 ORTHO05D002795 3.5e-07 58.9 104 41.3
FvH4_6g28080 Fragaria vesca HOM05D001040 ORTHO05D002795 3.5e-07 58.9 87 44.8
FAN02G1043 Fragaria x ananassa HOM05D001040 ORTHO05D002795 3.5e-07 58.9 87 44.8
FAN05G2537 Fragaria x ananassa HOM05D001040 ORTHO05D002795 3.5e-07 58.9 87 44.8
FAN14G1907 Fragaria x ananassa HOM05D001040 ORTHO05D002795 3.5e-07 58.9 87 44.8
Lj5A82T34 Lonicera japonica HOM05D001040 ORTHO05D002795 3.5e-07 58.9 87 42.5
Sabra01G0026700 Salix brachista HOM05D001040 ORTHO05D002795 3.5e-07 58.9 104 40.4
CDE05G1484 Ceratophyllum demersum HOM05D001040 ORTHO05D002795 4.5e-07 58.5 61 50.8
AUR62034045 Chenopodium quinoa HOM05D001040 ORTHO05D002795 4.5e-07 58.5 104 40.4
Oeu051548.1 Olea europaea HOM05D001040 ORTHO05D002795 4.5e-07 58.5 88 43.2
Potri.003G186500 Populus trichocarpa HOM05D001040 ORTHO05D002795 4.5e-07 58.5 87 41.4
Sc12g0008600 Simmondsia chinensis HOM05D001040 ORTHO05D002795 4.5e-07 58.5 104 39.4
Aa31LG7G720 Aethionema arabicum HOM05D001040 ORTHO05D002795 5.9e-07 58.2 87 43.7
Hma1.2p1_0338F.1_g129660 Hydrangea macrophylla HOM05D001040 ORTHO05D002795 5.9e-07 58.2 61 54.1
MD09G1229700 Malus domestica HOM05D001040 ORTHO05D002795 5.9e-07 58.2 87 41.4
THA.LOC104808162 Tarenaya hassleriana HOM05D001040 ORTHO05D002795 5.9e-07 58.2 87 43.7
Actinidia25489 Actinidia chinensis HOM05D001040 ORTHO05D002795 7.7e-07 57.8 87 41.4
Ciclev10025720m.g Citrus clementina HOM05D001040 ORTHO05D002795 7.7e-07 57.8 87 42.5
MD17G1228400 Malus domestica HOM05D001040 ORTHO05D002795 7.7e-07 57.8 87 41.4
CANSAT64G1050 Cannabis sativa HOM05D001040 ORTHO05D002795 1.0e-06 57.4 87 41.4
DCAR_025612 Daucus carota HOM05D001040 ORTHO05D002795 1.0e-06 57.4 87 44.8
FAN09G1641 Fragaria x ananassa HOM05D001040 ORTHO05D002795 1.0e-06 57.4 87 43.7
Gorai.010G236500 Gossypium raimondii HOM05D001040 ORTHO05D002795 1.0e-06 57.4 87 42.5
Oeu003114.2 Olea europaea HOM05D001040 ORTHO05D002795 1.0e-06 57.4 88 43.2
TAR383G0275 Trochodendron aralioides HOM05D001040 ORTHO05D002795 1.0e-06 57.4 87 41.4
HanXRQChr04g0100001 Helianthus annuus HOM05D001040 ORTHO05D002795 1.3e-06 57.0 87 41.4
Prupe.3G105800 Prunus persica HOM05D001040 ORTHO05D002795 1.3e-06 57.0 61 54.1
Dinv23263 Davidia involucrata HOM05D001040 ORTHO05D002795 1.7e-06 56.6 87 42.5
Gohir.D06G145900 Gossypium hirsutum HOM05D001040 ORTHO05D002795 1.7e-06 56.6 87 42.5
Sopen03g036680 Solanum pennellii HOM05D001040 ORTHO05D002795 1.7e-06 56.6 87 43.7
Gorai.010G170100 Gossypium raimondii HOM05D001040 ORTHO05D002795 2.3e-06 56.2 87 41.4
Peaxi162Scf00314g00936 Petunia axillaris HOM05D001040 ORTHO05D002795 2.3e-06 56.2 87 42.5
Duzib160G0753 Durio zibethinus HOM05D001040 ORTHO05D002795 2.9e-06 55.8 87 41.4
HanXRQChr02g0033691 Helianthus annuus HOM05D001040 ORTHO05D002795 2.9e-06 55.8 87 41.4
Rhsim08G0202300 Rhododendron simsii HOM05D001040 ORTHO05D002795 2.9e-06 55.8 87 40.2
CiPaw.01G051700 Carya illinoinensis HOM05D001040 ORTHO05D002795 3.8e-06 55.5 87 42.5
Migut.I00633 Erythranthe guttata HOM05D001040 ORTHO05D002795 3.8e-06 55.5 105 39.0
Lj1g0014351 Lotus japonicus HOM05D001040 ORTHO05D002795 3.8e-06 55.5 94 43.6
Manes.11G070700 Manihot esculenta HOM05D001040 ORTHO05D002795 3.8e-06 55.5 87 41.4
Cpa.g.sc68.35 Carica papaya HOM05D001040 ORTHO05D002795 5.0e-06 55.1 62 56.5
Psat3g145560 Pisum sativum HOM05D001040 ORTHO05D002795 5.0e-06 55.1 87 44.8
Lalb_Chr19g0125621 Lupinus albus HOM05D001040 ORTHO05D002795 6.6e-06 54.7 87 42.5
Sp5g34730 Schrenkiella parvula HOM05D001040 ORTHO05D002795 6.6e-06 54.7 87 42.5
Cfa004171 Carpinus fangiana HOM05D001040 ORTHO05D002795 8.6e-06 54.3 87 42.5
Gohir.A06G194900 Gossypium hirsutum HOM05D001040 ORTHO05D002795 8.6e-06 54.3 87 42.5
Gohir.D06G202600 Gossypium hirsutum HOM05D001040 ORTHO05D002795 8.6e-06 54.3 87 42.5
Manes.04G098900 Manihot esculenta HOM05D001040 ORTHO05D002795 8.6e-06 54.3 61 54.1
Mapoly0094s0052 Marchantia polymorpha HOM05D001040 ORTHO05D002795 8.6e-06 54.3 117 35.0


User provided reference genes

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