Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 3.0e-78 295.0 144 100.0
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 4.7e-55 218.0 145 75.2
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 6.6e-49 197.6 146 68.5
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.1e-26 122.9 146 47.9
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 2.7e-26 122.5 148 47.3
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 7.8e-26 120.9 151 43.7
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 7.8e-26 120.9 118 51.7
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.3e-25 120.2 149 45.6
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 3.9e-25 118.6 132 50.0
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 5.1e-25 118.2 147 46.3
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.9e-24 116.3 161 47.2
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.5e-24 115.9 153 45.8
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 4.3e-24 115.2 153 46.4
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.1e-23 112.8 153 41.8
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 3.6e-23 112.1 114 50.0
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.2e-23 111.3 151 45.7
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 6.2e-23 111.3 156 44.2
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.1e-22 110.5 153 42.5
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 1.4e-22 110.2 148 45.9
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 4.0e-22 108.6 150 46.7
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.0e-22 108.6 153 44.4
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 5.2e-22 108.2 151 45.7
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 5.2e-22 108.2 145 42.8
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 1.2e-21 107.1 153 43.1
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.5e-21 106.7 156 44.9
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 2.0e-21 106.3 154 40.9
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 2.0e-21 106.3 150 44.0
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 2.6e-21 105.9 150 43.3
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 9.9e-21 104.0 146 40.4
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 1.3e-20 103.6 153 42.5
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.3e-20 103.6 157 43.9
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 3.8e-20 102.1 156 38.5
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 3.8e-20 102.1 152 40.1
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 3.8e-20 102.1 152 40.1
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.1e-19 100.5 122 43.4
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 1.1e-19 100.5 122 43.4
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 3.2e-19 99.0 148 39.2
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 7.1e-19 97.8 153 43.1
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 9.3e-19 97.4 144 40.3
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.2e-18 97.1 150 41.3
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 1.2e-18 97.1 155 38.1
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.6e-18 96.7 145 42.1
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 2.1e-18 96.3 152 44.1
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.1e-18 96.3 121 43.0
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 3.9e-17 92.0 151 37.7
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 5.1e-17 91.7 145 40.0
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 5.1e-17 91.7 156 39.1
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.9e-16 89.7 114 46.5
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 2.5e-16 89.4 132 39.4
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 2.5e-16 89.4 148 36.5
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 2.5e-16 89.4 144 41.0
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 2.5e-16 89.4 165 37.0
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 3.3e-16 89.0 154 35.7
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 3.3e-16 89.0 142 41.5
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 9.6e-16 87.4 156 35.9
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.3e-15 87.0 144 38.2
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.8e-15 85.1 142 36.6
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.1e-14 84.0 111 40.5
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 1.8e-14 83.2 128 38.3
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 3.1e-14 82.4 163 36.2
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 4.0e-14 82.0 144 38.9
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 9.0e-14 80.9 142 38.0
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 1.2e-13 80.5 164 37.8
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 3.4e-13 79.0 165 35.2
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 4.5e-13 78.6 153 35.9
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 9.9e-13 77.4 163 36.2
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.2e-12 76.3 117 37.6
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 4.9e-12 75.1 131 38.9
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 6.4e-12 74.7 66 54.5
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 8.4e-12 74.3 157 35.0
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 1.4e-11 73.6 164 34.8
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.9e-11 73.2 131 37.4
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 2.4e-11 72.8 105 39.0
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 9.3e-11 70.9 130 41.5
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 9.3e-11 70.9 130 41.5
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.6e-10 70.1 76 51.3
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.6e-10 70.1 117 40.2
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 2.1e-10 69.7 130 41.5
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 2.1e-10 69.7 130 41.5
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 2.1e-10 69.7 130 41.5
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 2.1e-10 69.7 128 35.2
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 2.1e-10 69.7 157 32.5
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.7e-10 69.3 119 34.5
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 2.7e-10 69.3 174 32.8
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 3.5e-10 68.9 156 34.0
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 4.6e-10 68.6 146 37.0
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 4.6e-10 68.6 65 52.3
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 6.0e-10 68.2 132 39.4
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 6.0e-10 68.2 114 36.0
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 6.0e-10 68.2 138 36.2
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 7.9e-10 67.8 128 35.9
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 1.0e-09 67.4 123 38.2
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 1.3e-09 67.0 105 38.1
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 1.8e-09 66.6 146 32.9
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 2.3e-09 66.2 121 38.0
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 5.1e-09 65.1 132 37.9
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 5.1e-09 65.1 131 33.6
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 5.1e-09 65.1 114 32.5
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.3e-07 60.5 137 34.3
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 2.1e-07 59.7 71 47.9
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 6.2e-07 58.2 35 68.6
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 8.1e-07 57.8 36 61.1
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 1.8e-06 56.6 160 31.9


User provided reference genes

Program Settings