Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.2e-58 229.6 113 100.0
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 7.4e-56 220.3 117 94.9
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.0e-54 213.8 117 91.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.3e-49 198.7 117 85.5
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 4.2e-43 177.9 116 75.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 9.4e-43 176.8 114 76.3
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.6e-42 176.0 114 76.3
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.6e-42 174.9 114 76.3
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.7e-42 174.5 115 75.7
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.0e-42 173.7 114 75.4
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.0e-42 173.7 114 75.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 8.0e-42 173.7 114 76.3
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 8.0e-42 173.7 112 75.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.4e-41 172.9 114 71.9
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.4e-41 172.9 112 74.1
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.4e-41 172.9 112 74.1
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.8e-41 172.6 114 76.3
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.8e-41 172.6 112 76.8
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.8e-41 172.6 112 76.8
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.8e-41 172.6 114 74.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.8e-41 172.6 114 74.6
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.8e-41 172.6 113 75.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 2.3e-41 172.2 114 73.7
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.3e-41 172.2 114 76.3
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 6.8e-41 170.6 113 70.8
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.2e-40 169.9 114 74.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.2e-40 169.9 113 70.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.5e-40 169.5 114 72.8
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.5e-40 169.5 114 73.7
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.6e-40 168.7 115 71.3
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.6e-40 168.7 115 73.0
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.4e-40 168.3 109 77.1
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.4e-40 168.3 113 72.6
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 4.4e-40 167.9 112 73.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 4.4e-40 167.9 112 71.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 5.7e-40 167.5 112 74.1
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 5.7e-40 167.5 114 73.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.7e-40 167.5 112 73.2
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 7.5e-40 167.2 114 73.7
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 7.5e-40 167.2 113 72.6
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 9.8e-40 166.8 113 69.9
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.8e-39 165.2 113 71.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 2.8e-39 165.2 112 70.5
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.8e-39 165.2 111 73.0
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.7e-39 164.9 117 69.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.8e-39 164.5 112 72.3
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 6.3e-39 164.1 112 69.6
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 6.3e-39 164.1 109 74.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.3e-39 164.1 109 72.5
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.1e-38 163.3 111 70.3
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.8e-38 162.5 114 69.3
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 5.4e-38 161.0 111 73.0
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.4e-38 161.0 113 70.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 5.4e-38 161.0 112 69.6
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 7.0e-38 160.6 109 71.6
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 7.0e-38 160.6 108 75.0
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-37 159.5 112 70.5
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.6e-37 159.5 112 69.6
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.5e-37 158.3 110 72.7
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.5e-37 158.3 109 73.4
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.5e-37 157.9 109 69.7
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 7.7e-37 157.1 112 67.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 3.8e-36 154.8 114 65.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.0e-36 154.5 112 67.9
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.0e-36 154.5 112 67.0
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 8.5e-36 153.7 110 69.1
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.5e-35 152.9 110 66.4
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.9e-35 152.5 109 74.3
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.5e-35 152.1 114 64.9
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 3.2e-35 151.8 111 65.8
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 3.2e-35 151.8 110 65.5
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 4.2e-35 151.4 111 65.8
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 4.2e-35 151.4 110 69.1
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.2e-35 150.6 111 67.6
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 9.5e-35 150.2 112 67.9
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 9.5e-35 150.2 112 65.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 9.5e-35 150.2 83 91.6
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 9.5e-35 150.2 110 65.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-34 149.8 114 63.2
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-34 149.8 115 61.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.2e-34 149.8 110 69.1
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.6e-34 149.4 109 66.1
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.8e-34 148.7 108 68.5
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.7e-34 147.9 110 68.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.7e-34 147.9 110 67.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 6.1e-34 147.5 109 67.9
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.0e-33 146.7 112 67.0
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.8e-33 146.0 113 66.4
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.8e-33 146.0 113 62.8
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.8e-33 146.0 112 65.2
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.8e-33 146.0 112 67.0
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 2.3e-33 145.6 110 66.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.3e-33 145.6 129 57.4
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.3e-33 145.6 113 63.7
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 4.0e-33 144.8 110 67.3
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.2e-33 144.4 109 66.1
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 5.2e-33 144.4 112 66.1
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 8.8e-33 143.7 109 63.3
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-32 142.5 113 61.1
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 2.6e-32 142.1 110 67.3
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 3.4e-32 141.7 110 61.8
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 5.7e-32 141.0 110 62.7
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.3e-31 139.8 110 60.9
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.3e-31 139.8 112 65.2
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 2.2e-31 139.0 110 60.9
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.2e-31 139.0 111 62.2
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.7e-31 138.3 123 60.2
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.9e-31 137.9 94 72.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 8.3e-31 137.1 110 63.6
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.4e-30 135.6 109 59.6
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.1e-30 134.8 115 60.9
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 5.4e-30 134.4 117 58.1
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.2e-29 133.3 115 60.9
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.2e-29 133.3 115 56.5
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.6e-29 132.9 99 69.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.7e-29 132.1 109 58.7
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.7e-29 132.1 116 56.0
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 4.5e-29 131.3 116 55.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 5.9e-29 131.0 116 55.2
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.3e-28 129.8 110 54.5
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.8e-28 128.3 112 56.2
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.0e-28 127.9 100 64.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 5.0e-28 127.9 108 60.2
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 2.5e-27 125.6 109 56.9
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.3e-27 125.2 117 53.0
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 9.5e-27 123.6 109 57.8
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 9.5e-27 123.6 112 58.0
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.6e-26 121.7 107 55.1
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.7e-26 121.3 112 54.5
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 6.1e-26 120.9 111 61.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-25 119.8 108 56.5
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.4e-25 119.8 108 56.5
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-25 119.8 108 56.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.3e-25 119.0 112 52.7
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.0e-25 118.6 112 54.5
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.0e-25 118.2 113 54.9
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.2e-25 117.9 113 55.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.2e-25 117.9 110 55.5
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 8.9e-25 117.1 106 57.5
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.2e-24 116.7 112 55.4
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.2e-24 116.7 112 55.4
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-24 115.9 111 55.9
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.0e-24 115.9 110 53.6
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.6e-24 115.5 113 53.1
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 5.7e-24 114.4 110 52.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 9.8e-24 113.6 108 53.7
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 3.7e-23 111.7 110 52.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.9e-23 111.3 112 52.7
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.4e-22 109.0 108 51.9
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 3.2e-22 108.6 108 51.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 3.2e-22 108.6 108 51.9
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 9.2e-22 107.1 108 50.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 9.2e-22 107.1 108 50.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.2e-21 106.7 77 70.1
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.6e-21 106.3 110 51.8
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.7e-21 105.5 108 51.9
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.7e-21 105.5 108 51.9
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-18 95.9 65 70.8
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 4.7e-18 94.7 62 75.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.0e-18 94.0 110 45.5
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.8e-17 92.8 63 69.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.1e-17 92.0 65 69.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.4e-16 88.6 64 65.6
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.4e-16 88.6 64 65.6
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.7e-15 85.1 82 58.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 5.4e-14 81.3 110 40.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.2e-13 80.1 48 75.0
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 2.5e-11 72.4 51 72.5
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.5e-11 72.4 95 43.2
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.6e-11 71.2 44 72.7
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.6e-10 68.6 44 70.5
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 3.6e-10 68.6 59 61.0
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 6.2e-10 67.8 42 71.4
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.1e-10 67.4 48 64.6
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.4e-09 66.6 53 58.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-09 66.6 43 65.1
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.0e-08 62.8 69 53.6
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 9.2e-06 53.9 40 57.5


User provided reference genes

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