Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.8e-87 325.9 164 100.0
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 4.7e-83 311.2 164 93.3
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 7.7e-78 293.9 164 87.8
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 72.6
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 70.7
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 70.1
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 70.1
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 71.3
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 7.5e-65 250.8 164 72.0
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 68.9
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 71.3
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 71.3
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 69.5
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 68.9
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 70.7
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 69.5
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 70.1
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 70.1
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 67.7
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 69.5
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 70.7
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 70.1
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 68.9
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 69.5
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 69.5
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 68.9
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.6e-62 243.0 166 68.7
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 68.9
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.3
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 68.3
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 68.3
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 7.7e-62 240.7 166 68.7
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 70.7
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 68.9
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 67.7
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 66.5
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 69.5
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.7e-61 239.6 166 68.1
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 69.5
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 66.5
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.3
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 67.7
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 67.1
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 66.5
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 66.5
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 70.1
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 65.2
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 67.7
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 68.3
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 67.7
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 67.1
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.7
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 66.5
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 65.9
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 66.5
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 67.1
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.9e-60 236.1 156 71.2
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 65.2
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 67.1
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 3.2e-60 235.3 164 65.9
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 3.2e-60 235.3 164 66.5
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 3.2e-60 235.3 164 65.9
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 65.9
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 65.9
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 67.1
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 65.9
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 67.1
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 67.1
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 65.2
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 2.7e-59 232.3 164 65.2
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 2.7e-59 232.3 164 64.6
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 64.6
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 65.9
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 6.1e-59 231.1 157 68.2
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 67.1
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 66.5
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 66.5
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 63.4
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.0e-58 230.3 164 64.0
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.0e-58 230.3 162 65.4
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 65.9
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 65.9
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 66.5
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 3.0e-58 228.8 164 64.6
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 3.0e-58 228.8 164 64.6
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 5.2e-58 228.0 164 62.8
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 5.2e-58 228.0 164 62.8
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 6.8e-58 227.6 160 66.2
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 6.8e-58 227.6 164 65.2
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.2e-57 226.9 188 59.6
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 2.6e-57 225.7 164 64.0
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 2.6e-57 225.7 164 66.5
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 3.4e-57 225.3 164 64.0
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 4.4e-57 224.9 164 64.6
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 7.5e-57 224.2 173 60.1
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.8e-56 222.2 164 62.2
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 8.3e-56 220.7 164 64.0
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.1e-55 220.3 164 62.8
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 4.1e-55 218.4 174 62.1
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 9.1e-55 217.2 185 57.3
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 9.1e-55 217.2 193 55.4
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.0e-53 213.8 171 60.8
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 1.3e-53 213.4 191 55.0
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.9e-53 212.2 164 60.4
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 8.6e-53 210.7 164 56.7
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.7e-51 204.9 162 56.2
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.4e-47 192.6 170 57.1
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.4e-47 192.6 170 57.1
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 2.5e-44 182.6 133 62.4
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 4.3e-44 181.8 164 50.0
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.4e-42 176.8 132 62.9
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 8.9e-42 174.1 165 53.9
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.2e-41 173.7 164 53.0
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 4.9e-40 168.3 168 47.0
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 4.1e-39 165.2 167 50.9
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.0e-38 162.9 222 44.6
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 4.6e-38 161.8 159 47.8
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 4.3e-36 155.2 168 46.4
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 8.0e-35 151.0 117 62.4
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.8e-34 149.8 98 73.5
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 3.4e-33 145.6 121 52.9
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 2.2e-32 142.9 161 47.2
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 2.7e-30 136.0 83 79.5
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 7.8e-30 134.4 82 78.0
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.3e-29 132.9 94 70.2
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 3.0e-29 132.5 91 71.4
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 2.5e-28 129.4 84 76.2
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 9.5e-28 127.5 129 49.6
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 6.2e-27 124.8 96 56.2
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 2.9e-24 115.9 82 61.0
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 2.1e-22 109.8 66 75.8
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 3.9e-21 105.5 98 57.1
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 7.6e-17 91.3 69 58.0
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 1.4e-15 87.0 57 61.4
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.9e-15 86.7 119 36.1
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.6e-14 83.6 87 48.3
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.3e-13 80.5 53 71.7
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 9.6e-12 74.3 46 71.7
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 2.8e-11 72.8 47 61.7
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 4.7e-11 72.0 46 63.0
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-10 70.9 48 66.7
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.5e-09 67.0 76 50.0
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.5e-09 67.0 47 57.4
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 7.6e-09 64.7 48 62.5
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 1.2e-06 57.4 32 78.1


User provided reference genes

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