Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 3.2e-59 231.5 111 100.0
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 4.2e-11 71.6 89 46.1
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 7.2e-11 70.9 42 83.3
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.6e-10 69.7 43 79.1
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 3.6e-10 68.6 56 58.9
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 4.6e-10 68.2 42 76.2
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.6e-10 68.2 56 60.7
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.6e-10 68.2 56 60.7
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 6.1e-10 67.8 56 60.7
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 7.9e-10 67.4 89 44.9
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 7.9e-10 67.4 56 58.9
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 7.9e-10 67.4 56 58.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 7.9e-10 67.4 56 58.9
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 1.0e-09 67.0 89 42.7
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.4e-09 66.6 56 58.9
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.4e-09 66.6 56 58.9
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-09 66.2 73 47.9
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 8.8e-09 63.9 56 55.4
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 8.8e-09 63.9 73 43.8
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.1e-08 63.5 42 71.4
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.9e-08 62.8 43 72.1
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-08 62.4 43 67.4
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 3.3e-08 62.0 56 53.6
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 3.3e-08 62.0 56 53.6
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.3e-08 62.0 43 65.1
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.3e-08 62.0 43 65.1
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 3.3e-08 62.0 43 65.1
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 3.3e-08 62.0 63 47.6
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.3e-08 61.6 43 67.4
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 4.3e-08 61.6 43 67.4
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 5.7e-08 61.2 43 67.4
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 5.7e-08 61.2 43 65.1
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 7.4e-08 60.8 43 67.4
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.4e-08 60.8 43 67.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.4e-08 60.8 43 67.4
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 7.4e-08 60.8 52 53.8
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 9.7e-08 60.5 43 65.1
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 9.7e-08 60.5 43 62.8
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 9.7e-08 60.5 41 63.4
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-07 60.1 43 67.4
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.3e-07 60.1 43 62.8
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.3e-07 60.1 43 62.8
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.3e-07 60.1 63 46.0
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.7e-07 59.7 43 62.8
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.2e-07 59.3 43 65.1
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.2e-07 59.3 43 60.5
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 2.2e-07 59.3 43 62.8
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-07 59.3 35 71.4
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.2e-07 59.3 43 62.8
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.2e-07 59.3 43 65.1
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.2e-07 59.3 43 62.8
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 2.8e-07 58.9 43 62.8
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 2.8e-07 58.9 43 60.5
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 2.8e-07 58.9 43 65.1
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.8e-07 58.9 43 62.8
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 2.8e-07 58.9 43 65.1
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.7e-07 58.5 84 41.7
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 3.7e-07 58.5 115 31.3
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-07 58.5 35 71.4
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.7e-07 58.5 48 52.1
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 3.7e-07 58.5 43 58.1
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 4.8e-07 58.2 88 37.5
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 62.8
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 62.8
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 62.8
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 62.8
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 62.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 62.8
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 62.8
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 4.8e-07 58.2 43 65.1
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 6.3e-07 57.8 43 58.1
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 6.3e-07 57.8 43 60.5
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 6.3e-07 57.8 35 68.6
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 6.3e-07 57.8 43 60.5
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 8.2e-07 57.4 43 62.8
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 8.2e-07 57.4 43 62.8
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.1e-06 57.0 43 60.5
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 1.1e-06 57.0 43 62.8
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.1e-06 57.0 33 72.7
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-06 57.0 33 69.7
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.4e-06 56.6 43 58.1
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.4e-06 56.6 43 58.1
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.4e-06 56.6 43 60.5
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.8e-06 56.2 43 58.1
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 1.8e-06 56.2 43 62.8
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.8e-06 56.2 56 46.4
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-06 55.8 33 69.7
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 3.1e-06 55.5 32 68.8
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-06 55.5 35 65.7
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 4.1e-06 55.1 43 60.5
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 4.1e-06 55.1 43 60.5
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 5.3e-06 54.7 43 55.8
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 5.3e-06 54.7 32 68.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 9.1e-06 53.9 43 55.8
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 9.1e-06 53.9 43 55.8


User provided reference genes

Program Settings